AT4G38290

heptahelical

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
17942871 .. 17944047
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38290.1

Sequence Viewer

Length: 327 bp
ATGGGCAGCAACACATGTGGTGGATGCGGAGAAAGGGCAGTCAGTAATGAGGCAGAAAGGAGCATTATCCAAGATATTGTTACAGCAGTGATTGTGACTCGAAGAGAAGATATATATTTGACAGGTTATGAGATTTTGATGGGTTTGCTTTATGGGTTAGGAGCTCTGGTTTATGCAACTAGGATCCCAGAGAGATGGATGCCGGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTAGTTGCTGGTGCGTTCACGCACTATAGAGCTGGGCTAGTGTATCTTAAGTGGAGAGATATTGAAGGATGTTGA
Functional Annotation

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

6.4

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HlyIII PF03006 40 - 93 8.1e-21 Haemolysin-III related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017519)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AclWI GGATC 2 cut(s) 178, 191
AcsI RAATTY 1 cut(s) 209
AflII CTTAAG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 1 cut(s) 317
AluBI AGCT 2 cut(s) 164, 284
AluI AGCT 2 cut(s) 164, 284
Alw21I GWGCWC 1 cut(s) 166
AlwI GGATC 2 cut(s) 178, 191
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 204
BamHI GGATCC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 18
BccI CCATC 3 cut(s) 133, 189, 240
BcnI CCSGG 1 cut(s) 204
BfaI CTAG 2 cut(s) 180, 290
BfmI CTRYAG 1 cut(s) 277
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 14, 189
BpuMI CCSGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
BseGI GGATG 3 cut(s) 29, 204, 326
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 2 cut(s) 178, 191
BspTI CTTAAG 1 cut(s) 299
BssMI GATC 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 97
BstAFI CTTAAG 1 cut(s) 299
BstF5I GGATG 3 cut(s) 29, 204, 326
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 183
BtsCI GGATG 3 cut(s) 29, 204, 326
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 2 cut(s) 15, 245
CviJI RGCY 4 cut(s) 164, 231, 284, 289
CviKI_1 RGCY 4 cut(s) 164, 231, 284, 289
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 166
FaeI CATG 2 cut(s) 18, 248
FatI CATG 2 cut(s) 14, 244
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 2 cut(s) 36, 211
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 7
FspBI CTAG 2 cut(s) 180, 290
GluI GCNGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 288
HapII CCGG 1 cut(s) 203
Hin1II CATG 2 cut(s) 18, 248
HinfI GANTC 1 cut(s) 97
HpaII CCGG 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 270
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 176
Hsp92II CATG 2 cut(s) 18, 248
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 60, 161
LpnPI CCDG 8 cut(s) 108, 152, 201, 207, 216, 236, 246, 270
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 14, 189
MaeI CTAG 2 cut(s) 180, 290
MaeIII GTNAC 2 cut(s) 79, 94
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 2 cut(s) 114, 119
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 209
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 1 cut(s) 43
MseI TTAA 1 cut(s) 300
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 204
NciI CCSGG 1 cut(s) 204
NdeII GATC 1 cut(s) 183
NlaIII CATG 2 cut(s) 18, 248
NlaIV GGNNCC 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 18
PciI ACATGT 1 cut(s) 14
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PscI ACATGT 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 183
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 1 cut(s) 183
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 166
SetI ASST 3 cut(s) 127, 166, 286
SfaNI GCATC 2 cut(s) 14, 189
SfcI CTRYAG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 209
SsiI CCGC 1 cut(s) 27
SspMI CTAG 2 cut(s) 180, 290
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 202
TaqI TCGA 2 cut(s) 100, 213
TasI AATT 1 cut(s) 209
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 299
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 18
XspI CTAG 2 cut(s) 180, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.