AT2G40960

R3H domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017502
Physical Location & Seq
Forward (+)
17095165 .. 17097454
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40960.1

Sequence Viewer

Length: 1056 bp
ATGGACACAGCATTGACCTCAGAATCAGGCTGTGCCGTTATAGCCGATAAGGGATTCAATGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCTAACGATTTTGCGGATGGAACTTGATGTTCAGAGGTTCTTGCAGAGCCCTGATCAGCAGCAATTCGAGTTCCAGCATTTCCCTACATCATACCTCCGTTTTGCGGCTCATCGTGTTGCTAATCACTATGGACTAATTACATCAGTTCGAGATGGTGGTGCAGATGGTAATGAGAGCAGAATTGTCGTGACTAAATCTAGTGATAGCAGATTTCCTGCTGCTCGACTATCTGAAATCCCTGTGAAACAGTCAGAAACTGGCAAGTTTGAGCATATGAAAGTTGTTATAAAGCCAAGACCTACTAAAGGATCTGGAATGGAAGGTGATGAACTGAAAGGTGGTCTTCTGAAAAGTGTTGAAGAGAGGAAAGAAGATTACGACAGGGCTCGAGCACGCATATTTAACGGTCTTGTGAACATTGATTGTAACGATTCTTCATCTGAAACTAATCCTTGGAGGGTGAATTGTAGTTCTAGCAGAGATGAAAATCAAGTGTTGAAGAATGGTAATATCGAAGCAGACAAGAACAATATCTCTAGGAAGAGCAATCCTGCATCTCGTATTGCAATTCTCAGAGACAGAGAGAAAGATCGATATGACCCTGACTATGACCGCAGCAATTACAGGTACATTAGTAACCTCCCAGTCGATCAAAATTTATGCGTGGCACACTTCAACATTCAGACAATGGGGACACCAATCTATGATATGGGATTTAGAGGGTATAGTCCAACTGCTCCTCCATCTCTTAACTTGGGTCAACATTCTGTCATGAGCCCCTGCGTCACCACAGGTTTAAACCAGCCTTCAAGAGATGCTGCTATGTACATGCAATGGCCAAATGCAGCAGCTGTGATGTATACTCATTCATATGACCACTTCAGAAACTCCCCTTTTCAGGCGCAGTTCTATCCGCAGCCCCTTAGTTTCGATTACATGCAGAACCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

351

Amino Acids

39.84

Weight (kDa)

7.12

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H PF01424 37 - 100 2e-09 R3H domain
SUZ PF12752 126 - 171 2.2e-10 SUZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AccI GTMKAC 1 cut(s) 965
AciI CCGC 4 cut(s) 118, 209, 718, 1019
AclWI GGATC 3 cut(s) 59, 72, 421
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 1 cut(s) 760
AcuI CTGAAG 1 cut(s) 970
AfaI GTAC 2 cut(s) 734, 932
AfiI CCNNNNNNNGG 3 cut(s) 208, 410, 1003
AgeI ACCGGT 1 cut(s) 1050
AgsI TTSAA 6 cut(s) 58, 89, 464, 604, 781, 915
AluBI AGCT 1 cut(s) 956
AluI AGCT 1 cut(s) 956
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 3 cut(s) 59, 72, 421
AlwNI CAGNNNCTG 2 cut(s) 362, 956
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 1 cut(s) 941
ApeKI GCWGC 7 cut(s) 163, 323, 720, 923, 950, 953, 1021
ApoI RAATTY 1 cut(s) 760
AsiGI ACCGGT 1 cut(s) 1050
AspLEI GCGC 1 cut(s) 1009
AsuHPI GGTGA 3 cut(s) 440, 577, 883
AvaI CYCGRG 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 724, 757
BalI TGGCCA 1 cut(s) 943
BamHI GGATCC 1 cut(s) 64
BanII GRGCYC 3 cut(s) 155, 493, 884
BarI GAAGNNNNNNTAC 2 cut(s) 523, 555
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 7 cut(s) 175, 310, 732, 910, 962, 965, 1033
BccI CCATC 4 cut(s) 115, 251, 263, 856
BceAI ACGGC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 675
BfaI CTAG 3 cut(s) 303, 579, 642
BisI GCNGC 8 cut(s) 164, 210, 324, 721, 924, 951, 954, 1022
BlsI GCNGC 8 cut(s) 165, 211, 325, 722, 925, 952, 955, 1023
BmeT110I CYCGRG 1 cut(s) 492
BmiI GGNNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 2 cut(s) 668, 910
BmuI ACTGGG 1 cut(s) 743
BpiI GAAGAC 1 cut(s) 440
Bsa29I ATCGAT 1 cut(s) 697
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 557
BsaWI WCCGGW 1 cut(s) 1050
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 410, 1003
Bse118I RCCGGY 1 cut(s) 1050
Bse1I ACTGG 2 cut(s) 367, 749
Bse3DI GCAATG 1 cut(s) 944
Bse8I GATNNNNATC 1 cut(s) 591
BseCI ATCGAT 1 cut(s) 697
BseDI CCNNGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 208, 410, 1003
BseMI GCAATG 1 cut(s) 944
BseMII CTCAG 2 cut(s) 33, 691
BseNI ACTGG 2 cut(s) 367, 749
BseRI GAGGAG 1 cut(s) 834
BseXI GCAGC 7 cut(s) 175, 310, 732, 910, 962, 965, 1033
BsgI GTGCAG 1 cut(s) 285
BshFI GGCC 1 cut(s) 943
BshTI ACCGGT 1 cut(s) 1050
BshVI ATCGAT 1 cut(s) 697
BsiHKAI GWGCWC 1 cut(s) 499
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 1051
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 3 cut(s) 208, 410, 1003
BsmAI GTCTC 1 cut(s) 675
BsmFI GGGAC 1 cut(s) 811
BsnI GGCC 1 cut(s) 943
BsoBI CYCGRG 1 cut(s) 492
Bsp1286I GDGCHC 4 cut(s) 155, 493, 499, 884
Bsp1407I TGTACA 1 cut(s) 930
Bsp143I GATC 5 cut(s) 64, 157, 413, 694, 754
BspACI CCGC 4 cut(s) 118, 209, 718, 1019
BspANI GGCC 1 cut(s) 943
BspCNI CTCAG 2 cut(s) 32, 690
BspDI ATCGAT 1 cut(s) 697
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 3 cut(s) 59, 72, 421
BspQI GCTCTTC 2 cut(s) 90, 641
BsrDI GCAATG 1 cut(s) 944
BsrFI RCCGGY 1 cut(s) 1050
BsrGI TGTACA 1 cut(s) 930
BsrI ACTGG 2 cut(s) 367, 749
BssAI RCCGGY 1 cut(s) 1050
BssECI CCNNGG 1 cut(s) 557
BssMI GATC 5 cut(s) 64, 157, 413, 694, 754
BssNAI GTATAC 1 cut(s) 966
BssT1I CCWWGG 1 cut(s) 557
Bst1107I GTATAC 1 cut(s) 966
Bst4CI ACNGT 2 cut(s) 354, 512
Bst6I CTCTTC 3 cut(s) 90, 459, 641
BstAUI TGTACA 1 cut(s) 930
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 3 cut(s) 19, 677, 1028
BstENI CCTNNNNNAGG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 5 cut(s) 67, 160, 416, 697, 757
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 5 cut(s) 64, 157, 413, 694, 754
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 2 cut(s) 937, 1045
BstV1I GCAGC 7 cut(s) 175, 310, 732, 910, 962, 965, 1033
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 2 cut(s) 64, 413
BstYI RGATCY 2 cut(s) 64, 413
BstZ17I GTATAC 1 cut(s) 966
Bsu15I ATCGAT 1 cut(s) 697
BsuRI GGCC 1 cut(s) 943
BsuTUI ATCGAT 1 cut(s) 697
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 499
CaiI CAGNNNCTG 2 cut(s) 362, 956
CciI TCATGA 1 cut(s) 876
CfoI GCGC 1 cut(s) 1009
Cfr10I RCCGGY 1 cut(s) 1050
ClaI ATCGAT 1 cut(s) 697
CseI GACGC 1 cut(s) 877
Csp6I GTAC 2 cut(s) 733, 931
CspAI ACCGGT 1 cut(s) 1050
CviAII CATG 3 cut(s) 877, 934, 1042
CviQI GTAC 2 cut(s) 733, 931
DdeI CTNAG 3 cut(s) 19, 677, 1028
DpnI GATC 5 cut(s) 66, 159, 415, 696, 756
DpnII GATC 5 cut(s) 64, 157, 413, 694, 754
DraI TTTAAA 1 cut(s) 903
EaeI YGGCCR 1 cut(s) 941
Eam1104I CTCTTC 3 cut(s) 90, 459, 641
EarI CTCTTC 3 cut(s) 90, 459, 641
Eco130I CCWWGG 1 cut(s) 557
Eco24I GRGCYC 3 cut(s) 155, 493, 884
Eco57I CTGAAG 1 cut(s) 970
Eco88I CYCGRG 1 cut(s) 492
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 557
EcoT38I GRGCYC 3 cut(s) 155, 493, 884
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 3 cut(s) 880, 937, 1045
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 811
FatI CATG 3 cut(s) 876, 933, 1041
FauNDI CATATG 2 cut(s) 378, 976
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 965
Fnu4HI GCNGC 8 cut(s) 164, 210, 324, 721, 924, 951, 954, 1022
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 3 cut(s) 155, 493, 884
Fsp4HI GCNGC 8 cut(s) 164, 210, 324, 721, 924, 951, 954, 1022
FspBI CTAG 3 cut(s) 303, 579, 642
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 8 cut(s) 164, 210, 324, 721, 924, 951, 954, 1022
HaeIII GGCC 1 cut(s) 943
HapII CCGG 1 cut(s) 1051
HgaI GACGC 1 cut(s) 877
HhaI GCGC 1 cut(s) 1009
Hin1II CATG 3 cut(s) 880, 937, 1045
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HincII GTYRAC 1 cut(s) 866
HindII GTYRAC 1 cut(s) 866
HinfI GANTC 3 cut(s) 23, 54, 536
HpaII CCGG 1 cut(s) 1051
HphI GGTGA 3 cut(s) 440, 577, 883
Hpy166II GTNNAC 3 cut(s) 520, 866, 966
Hpy188I TCNGA 9 cut(s) 22, 138, 337, 358, 453, 547, 680, 789, 989
Hpy188III TCNNGA 5 cut(s) 254, 292, 417, 877, 915
Hpy8I GTNNAC 3 cut(s) 520, 866, 966
HpyAV CCTTC 2 cut(s) 419, 921
HpyCH4III ACNGT 2 cut(s) 354, 512
HpyCH4V TGCA 7 cut(s) 148, 266, 659, 671, 937, 950, 1045
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 19, 677, 1028
Hsp92II CATG 3 cut(s) 880, 937, 1045
HspAI GCGC 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 5 cut(s) 64, 157, 413, 694, 754
LguI GCTCTTC 2 cut(s) 90, 641
LmnI GCTCC 1 cut(s) 847
Lsp1109I GCAGC 7 cut(s) 175, 310, 732, 910, 962, 965, 1033
LweI GCATC 2 cut(s) 668, 910
MaeI CTAG 3 cut(s) 303, 579, 642
MaeIII GTNAC 4 cut(s) 292, 530, 740, 889
MalI GATC 5 cut(s) 66, 159, 415, 696, 756
MboI GATC 5 cut(s) 64, 157, 413, 694, 754
MboII GAAGA 7 cut(s) 77, 440, 476, 488, 531, 616, 658
MflI RGATCY 2 cut(s) 64, 413
MhlI GDGCHC 4 cut(s) 155, 493, 499, 884
MlsI TGGCCA 1 cut(s) 943
MluCI AATT 7 cut(s) 167, 240, 285, 568, 672, 724, 760
MluNI TGGCCA 1 cut(s) 943
MmeI TCCRAC 1 cut(s) 860
Mox20I TGGCCA 1 cut(s) 943
MscI TGGCCA 1 cut(s) 943
MseI TTAA 3 cut(s) 507, 855, 902
MslI CAYNNNNRTG 1 cut(s) 975
Msp20I TGGCCA 1 cut(s) 943
MspA1I CMGCKG 1 cut(s) 956
MspI CCGG 1 cut(s) 1051
MssI GTTTAAAC 1 cut(s) 903
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeI CATATG 2 cut(s) 378, 976
NdeII GATC 5 cut(s) 64, 157, 413, 694, 754
NlaIII CATG 3 cut(s) 880, 937, 1045
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 292, 889
NspI RCATGY 2 cut(s) 937, 1045
PaeR7I CTCGAG 1 cut(s) 492
PagI TCATGA 1 cut(s) 876
PciSI GCTCTTC 2 cut(s) 90, 641
PfeI GAWTC 3 cut(s) 23, 54, 536
PflFI GACNNNGTC 1 cut(s) 102
PinAI ACCGGT 1 cut(s) 1050
PkrI GCNGC 8 cut(s) 165, 211, 325, 722, 925, 952, 955, 1023
PmeI GTTTAAAC 1 cut(s) 903
PsiI TTATAA 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 492
PstNI CAGNNNCTG 2 cut(s) 362, 956
PsuI RGATCY 2 cut(s) 64, 413
PsyI GACNNNGTC 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 956
RsaI GTAC 2 cut(s) 734, 932
RsaNI GTAC 2 cut(s) 733, 931
RseI CAYNNNNRTG 1 cut(s) 975
SapI GCTCTTC 2 cut(s) 90, 641
SaqAI TTAA 3 cut(s) 507, 855, 902
SatI GCNGC 8 cut(s) 164, 210, 324, 721, 924, 951, 954, 1022
Sau3AI GATC 5 cut(s) 64, 157, 413, 694, 754
SduI GDGCHC 4 cut(s) 155, 493, 499, 884
SfaNI GCATC 2 cut(s) 668, 910
Sfr274I CTCGAG 1 cut(s) 492
SlaI CTCGAG 1 cut(s) 492
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 1 cut(s) 492
SmoI CTYRAG 1 cut(s) 492
Sse9I AATT 7 cut(s) 167, 240, 285, 568, 672, 724, 760
SsiI CCGC 4 cut(s) 118, 209, 718, 1019
SspMI CTAG 3 cut(s) 303, 579, 642
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 2 cut(s) 354, 512
TasI AATT 7 cut(s) 167, 240, 285, 568, 672, 724, 760
TatI WGTACW 1 cut(s) 930
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 3 cut(s) 23, 54, 536
Tru1I TTAA 3 cut(s) 507, 855, 902
Tru9I TTAA 3 cut(s) 507, 855, 902
TseFI GTSAC 2 cut(s) 292, 889
TseI GCWGC 7 cut(s) 163, 323, 720, 923, 950, 953, 1021
Tsp45I GTSAC 2 cut(s) 292, 889
TspDTI ATGAA 5 cut(s) 395, 447, 531, 603, 963
TspGWI ACGGA 1 cut(s) 191
Tth111I GACNNNGTC 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 408
XapI RAATTY 1 cut(s) 760
XceI RCATGY 2 cut(s) 937, 1045
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 965
XspI CTAG 3 cut(s) 303, 579, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.