AT3G56680

SUZ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017502
Physical Location & Seq
Forward (+)
20991280 .. 20993686
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56680.1

Sequence Viewer

Length: 1062 bp
ATGGACGTAGTGTTGCCGGAAACTGCCGTGGTAACCGGTGGTTCGGTTATCGGAGATTATGGATTTAATGTGGATCCTTTTCTCGTTGAGGCGTTGCACAACTCTCGCCATCGTCTCACGATTTTGCGGATGGAACTTGATGTTCAAAGGTTGTTGCAGAACCCTGAACAGCAGCAGTTTGAGTTCCAGCATTTTCCTACTTCGTATCTTCGTCTTGCAGCCCATCGTGTTGCTAACCATTATGGGCTAGCTACAGCTGTCCAAGAGAGTGGTGCTGATGGAAATGAAAACAGAATCCTTGTGACGAAAACTACAGAGAGCAAATTTCCTGCTGTTCGGTTGTCTGAAATCCCGGTGGCTAAACAATCAGAAAATGGTAAGTTTGAGAGCAGGAAAGTTTCCATCAAGACTCGACCTTCTAAAGGATCTGGATATGGCGCTGGTGATCTGGAAAAGAATCGTGGTCCTCTTAGAAGTGTTGAAGAGAGGAAAGAAGAGTATGACAAGGCTCGAGAACGCATATTCAGTGGTCTTACTGGTCTTAGTTGTGATGACTCTTCATCTGAAACTCAGGTGTATGAGAGGAATGCAAGTCTTAGCAGAGATGACAAGCAAGTATCTAAGAATGCTTACGTTGAGGTCAAGAAGAACTTAAGCATCAGGGAAAGTGGTCCAACATCTCGTGTTGCAATATTTAGAGACAGAGAGAAAGATCGGTTTGACCCTGATTATGACCGCAGACACCAAAGGTACATTAGGAGCCTTCCGGTGAATCAGAACTTCAATCTACCACCCTTCAACATTCAGCAAATACCGACACCATACTACGAAATGGGATTCACTGGATATAACCAAATTCCAAGTCCTCCTGCTCCTCTTGGCTTCGGACCACATCCTAGCTCAATCATGAGTCCCTATGGCACCACAATGGATGCAATGTATATGCATTGGCCTAATGCAGCTATGATGTATGCTCATCCGTATGAGCAGTTCAGGAATGGCTCTCTTCAGGCACAGTTCGTTCAACAACCCTTGAGCTTCGACTACATGCAGAACCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

353

Amino Acids

40.23

Weight (kDa)

7.82

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H PF01424 40 - 102 5e-08 R3H domain
SUZ PF12752 131 - 177 1.4e-11 SUZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 920
AciI CCGC 3 cut(s) 127, 736, 1057
AclWI GGATC 3 cut(s) 68, 81, 433
AcsI RAATTY 2 cut(s) 323, 855
AcuI CTGAAG 1 cut(s) 992
AfaI GTAC 1 cut(s) 752
AfiI CCNNNNNNNGG 1 cut(s) 422
AflII CTTAAG 1 cut(s) 652
AgeI ACCGGT 1 cut(s) 35
AgsI TTSAA 5 cut(s) 146, 482, 784, 799, 1025
AluBI AGCT 5 cut(s) 251, 257, 900, 962, 1038
AluI AGCT 5 cut(s) 251, 257, 900, 962, 1038
Alw26I GTCTC 2 cut(s) 119, 693
AlwI GGATC 3 cut(s) 68, 81, 433
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 950
ApeKI GCWGC 3 cut(s) 172, 218, 959
ApoI RAATTY 2 cut(s) 323, 855
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
AsiGI ACCGGT 1 cut(s) 35
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 3 cut(s) 464, 671, 887
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 455, 781
AsuNHI GCTAGC 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 3 cut(s) 464, 671, 887
BamHI GGATCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 920
BauI CACGAG 1 cut(s) 681
BbvI GCAGC 3 cut(s) 184, 230, 971
BccI CCATC 5 cut(s) 117, 124, 231, 272, 410
BceAI ACGGC 1 cut(s) 11
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 2 cut(s) 119, 693
BfaI CTAG 3 cut(s) 248, 897, 1060
BfmI CTRYAG 2 cut(s) 252, 312
BfoI RGCGCY 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 652
BisI GCNGC 3 cut(s) 173, 219, 960
BlsI GCNGC 3 cut(s) 174, 220, 961
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 3 cut(s) 464, 671, 887
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 3 cut(s) 464, 671, 887
BmiI GGNNCC 3 cut(s) 75, 761, 922
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 666, 922
BmtI GCTAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 1054
BpuMI CCSGG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 2 cut(s) 35, 766
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 541, 847
Bse3DI GCAATG 1 cut(s) 942
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 4 cut(s) 135, 892, 937, 976
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 1 cut(s) 584
BseNI ACTGG 2 cut(s) 541, 847
BseRI GAGGAG 1 cut(s) 864
BseXI GCAGC 3 cut(s) 184, 230, 971
BshFI GGCC 1 cut(s) 952
BshNI GGYRCC 1 cut(s) 920
BshTI ACCGGT 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 4 cut(s) 17, 36, 353, 767
BslFI GGGAC 1 cut(s) 897
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 119, 693
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 897
BsmI GAATGC 2 cut(s) 592, 631
BsnI GGCC 1 cut(s) 952
BsoBI CYCGRG 1 cut(s) 510
Bsp143I GATC 4 cut(s) 73, 425, 445, 712
BspACI CCGC 3 cut(s) 127, 736, 1057
BspANI GGCC 1 cut(s) 952
BspCNI CTCAG 1 cut(s) 583
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 3 cut(s) 75, 761, 922
BspOI GCTAGC 1 cut(s) 251
BspPI GGATC 3 cut(s) 68, 81, 433
BspT107I GGYRCC 1 cut(s) 920
BspTI CTTAAG 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 541, 847
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 4 cut(s) 73, 425, 445, 712
BssSI CACGAG 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 681
Bst4CI ACNGT 1 cut(s) 1017
Bst6I CTCTTC 4 cut(s) 477, 489, 562, 1011
BstAFI CTTAAG 1 cut(s) 652
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 5 cut(s) 470, 542, 570, 596, 621
BstDSI CCRYGG 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 31
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 4 cut(s) 135, 892, 937, 976
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 4 cut(s) 76, 428, 448, 715
BstMAI GTCTC 2 cut(s) 119, 693
BstMBI GATC 4 cut(s) 73, 425, 445, 712
BstNSI RCATGY 1 cut(s) 1051
BstPI GGTNACC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 2 cut(s) 252, 312
BstV1I GCAGC 3 cut(s) 184, 230, 971
BstX2I RGATCY 2 cut(s) 73, 425
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 2 cut(s) 73, 425
BsuRI GGCC 1 cut(s) 952
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 4 cut(s) 135, 892, 937, 976
BtsIMutI CAGTG 2 cut(s) 532, 840
Cac8I GCNNGC 1 cut(s) 249
CciI TCATGA 1 cut(s) 906
CfoI GCGC 1 cut(s) 440
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 464, 671, 887
Csp6I GTAC 1 cut(s) 751
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 907, 1048
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 5 cut(s) 470, 542, 570, 596, 621
DpnI GATC 4 cut(s) 75, 427, 447, 714
DpnII GATC 4 cut(s) 73, 425, 445, 712
Eam1104I CTCTTC 4 cut(s) 477, 489, 562, 1011
EarI CTCTTC 4 cut(s) 477, 489, 562, 1011
Eco47I GGWCC 3 cut(s) 464, 671, 887
Eco57I CTGAAG 1 cut(s) 992
Eco88I CYCGRG 1 cut(s) 510
Eco91I GGTNACC 1 cut(s) 31
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 948
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 2 cut(s) 910, 1051
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FaqI GGGAC 1 cut(s) 897
FatI CATG 2 cut(s) 906, 1047
Fnu4HI GCNGC 3 cut(s) 173, 219, 960
FokI GGATG 4 cut(s) 142, 879, 944, 963
Fsp4HI GCNGC 3 cut(s) 173, 219, 960
FspBI CTAG 3 cut(s) 248, 897, 1060
GlaI GCGC 1 cut(s) 439
GluI GCNGC 3 cut(s) 173, 219, 960
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 1 cut(s) 952
HapII CCGG 4 cut(s) 17, 36, 353, 767
HhaI GCGC 1 cut(s) 440
Hin1II CATG 2 cut(s) 910, 1051
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 7 cut(s) 294, 409, 457, 554, 772, 837, 910
HpaII CCGG 4 cut(s) 17, 36, 353, 767
HphI GGTGA 2 cut(s) 455, 781
Hpy188I TCNGA 6 cut(s) 53, 346, 370, 565, 777, 887
Hpy188III TCNNGA 8 cut(s) 118, 406, 429, 449, 512, 643, 907, 994
HpyAV CCTTC 3 cut(s) 426, 773, 805
HpyCH4III ACNGT 1 cut(s) 1017
HpyCH4IV ACGT 2 cut(s) 6, 633
HpyCH4V TGCA 9 cut(s) 97, 157, 218, 590, 689, 935, 946, 959, 1051
HpyF3I CTNAG 5 cut(s) 470, 542, 570, 596, 621
HpySE526I ACGT 2 cut(s) 6, 633
Hsp92II CATG 2 cut(s) 910, 1051
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 4 cut(s) 73, 425, 445, 712
LmnI GCTCC 2 cut(s) 759, 877
Lsp1109I GCAGC 3 cut(s) 184, 230, 971
LweI GCATC 2 cut(s) 666, 922
MaeI CTAG 3 cut(s) 248, 897, 1060
MaeII ACGT 2 cut(s) 6, 633
MaeIII GTNAC 2 cut(s) 31, 301
MalI GATC 4 cut(s) 75, 427, 447, 714
MboI GATC 4 cut(s) 73, 425, 445, 712
MboII GAAGA 6 cut(s) 200, 494, 506, 549, 658, 998
MflI RGATCY 2 cut(s) 73, 425
MluCI AATT 2 cut(s) 323, 855
MlyI GAGTC 3 cut(s) 403, 548, 919
MmeI TCCRAC 1 cut(s) 698
MnlI CCTC 7 cut(s) 82, 477, 480, 576, 631, 876, 885
Mph1103I ATGCAT 1 cut(s) 948
MseI TTAA 2 cut(s) 66, 653
MslI CAYNNNNRTG 2 cut(s) 926, 981
MspA1I CMGCKG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 652
MspI CCGG 4 cut(s) 17, 36, 353, 767
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 2 cut(s) 592, 631
NciI CCSGG 1 cut(s) 353
NdeII GATC 4 cut(s) 73, 425, 445, 712
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 910, 1051
NlaIV GGNNCC 3 cut(s) 75, 761, 922
NmuCI GTSAC 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 948
NspI RCATGY 1 cut(s) 1051
PaeR7I CTCGAG 1 cut(s) 510
PagI TCATGA 1 cut(s) 906
PctI GAATGC 2 cut(s) 592, 631
PfeI GAWTC 4 cut(s) 294, 457, 772, 837
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 3 cut(s) 174, 220, 961
PleI GAGTC 3 cut(s) 403, 548, 918
PpsI GAGTC 3 cut(s) 403, 548, 918
PspEI GGTNACC 1 cut(s) 31
PspN4I GGNNCC 3 cut(s) 75, 761, 922
PspPI GGNCC 3 cut(s) 464, 671, 887
PsrI GAACNNNNNNTAC 2 cut(s) 974, 1006
PsuI RGATCY 2 cut(s) 73, 425
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
RseI CAYNNNNRTG 2 cut(s) 926, 981
SaqAI TTAA 2 cut(s) 66, 653
SatI GCNGC 3 cut(s) 173, 219, 960
Sau3AI GATC 4 cut(s) 73, 425, 445, 712
Sau96I GGNCC 3 cut(s) 464, 671, 887
SchI GAGTC 3 cut(s) 403, 548, 919
ScrFI CCNGG 1 cut(s) 353
SfaNI GCATC 2 cut(s) 666, 922
SfcI CTRYAG 2 cut(s) 252, 312
Sfr274I CTCGAG 1 cut(s) 510
SinI GGWCC 3 cut(s) 464, 671, 887
SlaI CTCGAG 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 926, 981
SmlI CTYRAG 3 cut(s) 510, 652, 1033
SmoI CTYRAG 3 cut(s) 510, 652, 1033
Sse9I AATT 2 cut(s) 323, 855
SsiI CCGC 3 cut(s) 127, 736, 1057
SspI AATATT 1 cut(s) 693
SspMI CTAG 3 cut(s) 248, 897, 1060
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 1017
TaiI ACGT 2 cut(s) 9, 636
TaqI TCGA 3 cut(s) 412, 511, 1041
TasI AATT 2 cut(s) 323, 855
TfiI GAWTC 4 cut(s) 294, 457, 772, 837
Tru1I TTAA 2 cut(s) 66, 653
Tru9I TTAA 2 cut(s) 66, 653
TscAI CASTG 2 cut(s) 532, 847
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 3 cut(s) 172, 218, 959
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 300, 549
TspGWI ACGGA 1 cut(s) 969
TspRI CASTG 2 cut(s) 532, 847
Vha464I CTTAAG 1 cut(s) 652
VpaK11BI GGWCC 3 cut(s) 464, 671, 887
XagI CCTNNNNNAGG 1 cut(s) 420
XapI RAATTY 2 cut(s) 323, 855
XceI RCATGY 1 cut(s) 1051
XhoI CTCGAG 1 cut(s) 510
XspI CTAG 3 cut(s) 248, 897, 1060
Zsp2I ATGCAT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.