Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0017502

Physical Location & Seq

Genomic Coordinates Forward (+)

11782158 .. 11785659

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1092100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAATCCTCATCTTCTTCAGCTTCCAGCGATGGCCTTAACCTCAAAGAAGGGTCAATCGTTGACCCTTTCTTGGTCGAGGCTCTCCAGAATCCTCGTCACCGACTCACCATTTTGCGAATGGAACTTGATATCCAGAGGTTTCTGAAAAGTCCTGATCAGCAGCTGTTCGAGTTCCAACATTTCCCTACATCCTACCTTCGACTTGCTGCACATCGTGTTTCTCAACACTATGGCTTGCAGACTATGGTTCAGGATTGGGGCTCAGATGGTCAAGGGAATAGGATTTTGGTGAGGAAAACAGCAGAAAGCAAATACCCAGCAATTCAGTTATCCGAAATACCGGCTAAGCAGTCAGAAAACAATAGACATGAGCAGATTAAAATTGTCATCAAGCCCAGGTCTGATAAAAATAATATGAATGGAGCTAATGGAGCTGGGATCAAACGAAGTCCTGTGAGAAGTGTGGAAGAGAGGAAGGAGGAGTACGATCGGGCACGGGCTCGCATCTTTAGCAGCACTAGCAGTTCTGATTCTGATGATACGCCTTTTCAGTCTCTTACGGATGTGAAAAATGCATTTTTGAGCAGGGATGAGAATGAAAGTTTTAGGAACTCTGTGGTTGATTCAGAAAAGAATTTAAACGTAAAGGATCTTGGTTCTTCATATCGAGTTGCCATTTTTAGAGATAGGGAAAAAGATCGTACTGACCCAGATTATGATCGAAGTTATGAAAGGTATGTCAGGAGTCTTCCTACCAATCAAGGATTTAACTTGGCACCTTTCAATATGCAAAAGGTTCAACCGCAGTTTTTGCAGTACGATGCTGTTTTCTCTCAGATGCCTAGGCATCAAGCTTCAATTAGTTATGGGCCTCCTTCAACCCCAGCTATGAGCCCTTTTTGTGCTGTGGGATTCAATCAGACATCTAGAGATGCTACGTACATGCAGTGGCCAAGTGCTTCAATGATGTATGCACATTCGTATGATCAGTTTAGGCAAGCTGTTATCCAGGCTCCATTCTGTCACCAACCCCTGAGCTTTCATTCACAAAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

R3H SUZ

Protein Analysis

354

Amino Acids

40.41

Weight (kDa)

8.39

Isoelectric Point (pI)

55.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	37 - 89	9.9e-09	R3H domain
SUZ	PF12752	126 - 174	1.5e-11	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40960 AT2G40960 AT3G56680
malus_domestica	MD12G1092100.v1.1 MD12G1092300.v1.1
prunus_persica	Prupe.7G027300_v2.0.a1 Prupe.7G027300_v2.0.a1
pyrus_communis	pycom12g07990
rosa_rugosa	Rorug02G0260200 Rorug02G0260300 Rorug02G0260400 Rorug02G0260500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	778
AciI	CCGC	1 cut(s)	806
AclWI	GGATC	2 cut(s)	449, 660
AcoI	YGGCCR	1 cut(s)	953
AcsI	RAATTY	1 cut(s)	637
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	4 cut(s)	488, 706, 821, 944
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	787, 803, 861, 882, 919, 966
AjnI	CCWGG	2 cut(s)	398, 1011
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	8 cut(s)	23, 166, 428, 437, 857, 890, 1004, 1041
AluI	AGCT	8 cut(s)	23, 166, 428, 437, 857, 890, 1004, 1041
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	2 cut(s)	449, 660
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	3 cut(s)	34, 872, 953
ApeKI	GCWGC	3 cut(s)	163, 209, 516
ApoI	RAATTY	1 cut(s)	637
AspA2I	CCTAGG	1 cut(s)	845
AspS9I	GGNCC	1 cut(s)	872
AsuHPI	GGTGA	4 cut(s)	92, 100, 304, 1019
AvrII	CCTAGG	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	955
BanI	GGYRCC	1 cut(s)	778
BanII	GRGCYC	3 cut(s)	266, 505, 899
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	3 cut(s)	175, 196, 528
BccI	CCATC	2 cut(s)	26, 263
BciT130I	CCWGG	2 cut(s)	400, 1013
BclI	TGATCA	2 cut(s)	157, 988
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	3 cut(s)	522, 846, 930
BisI	GCNGC	3 cut(s)	164, 210, 517
BlnI	CCTAGG	1 cut(s)	845
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	3 cut(s)	165, 211, 518
Bme1390I	CCNGG	2 cut(s)	400, 1013
BmgT120I	GGNCC	1 cut(s)	872
BmiI	GGNNCC	2 cut(s)	780, 1017
BmrFI	CCNGG	2 cut(s)	400, 1013
BmsI	GCATC	5 cut(s)	516, 814, 831, 859, 925
BpiI	GAAGAC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	1037
Bpu1102I	GCTNAGC	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	942
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	398, 845
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	2 cut(s)	400, 1013
BseDI	CCNNGG	2 cut(s)	398, 845
BseGI	GGATG	3 cut(s)	191, 571, 598
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	3 cut(s)	279, 851, 1028
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	175, 196, 528
BseYI	CCCAGC	3 cut(s)	319, 437, 886
BsgI	GTGCAG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	3 cut(s)	36, 874, 955
BshNI	GGYRCC	1 cut(s)	778
BsiEI	CGRYCG	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	561
BsnI	GGCC	3 cut(s)	36, 874, 955
Bsp1286I	GDGCHC	4 cut(s)	266, 499, 505, 899
Bsp143I	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
Bsp1720I	GCTNAGC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	806
BspANI	GGCC	3 cut(s)	36, 874, 955
BspCNI	CTCAG	3 cut(s)	278, 850, 1029
BspLI	GGNNCC	2 cut(s)	780, 1017
BspPI	GGATC	2 cut(s)	449, 660
BspT107I	GGYRCC	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	398, 845
BssMI	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
BssT1I	CCWWGG	1 cut(s)	845
Bst2UI	CCWGG	2 cut(s)	400, 1013
Bst6I	CTCTTC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstBAI	YACGTR	1 cut(s)	942
BstC8I	GCNNGC	3 cut(s)	239, 505, 1002
BstDEI	CTNAG	4 cut(s)	265, 348, 837, 1037
BstF5I	GGATG	3 cut(s)	191, 571, 598
BstKTI	GATC	7 cut(s)	160, 444, 493, 655, 703, 724, 991
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 513, 522, 814
BstNI	CCWGG	2 cut(s)	400, 1013
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	2 cut(s)	398, 1011
BstSLI	GKGCMC	1 cut(s)	499
BstSNI	TACGTA	1 cut(s)	942
BstV1I	GCAGC	3 cut(s)	175, 196, 528
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	36, 874, 955
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	191, 571, 598
BtsI	GCAGTG	1 cut(s)	956
BtsIMutI	CAGTG	1 cut(s)	956
Cac8I	GCNNGC	3 cut(s)	239, 505, 1002
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	872
Csp6I	GTAC	4 cut(s)	487, 705, 820, 943
CviAII	CATG	2 cut(s)	371, 946
CviQI	GTAC	4 cut(s)	487, 705, 820, 943
DdeI	CTNAG	4 cut(s)	265, 348, 837, 1037
DpnI	GATC	7 cut(s)	159, 443, 492, 654, 702, 723, 990
DpnII	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
DraI	TTTAAA	1 cut(s)	642
DraIII	CACNNNGTG	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	953
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco105I	TACGTA	1 cut(s)	942
Eco130I	CCWWGG	1 cut(s)	845
Eco24I	GRGCYC	3 cut(s)	266, 505, 899
Eco32I	GATATC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	398, 1011
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	845
EcoT22I	ATGCAT	1 cut(s)	580
EcoT38I	GRGCYC	3 cut(s)	266, 505, 899
ErhI	CCWWGG	1 cut(s)	845
FaeI	CATG	2 cut(s)	374, 949
FatI	CATG	2 cut(s)	370, 945
FbaI	TGATCA	2 cut(s)	157, 988
Fnu4HI	GCNGC	3 cut(s)	164, 210, 517
FokI	GGATG	3 cut(s)	178, 578, 605
FriOI	GRGCYC	3 cut(s)	266, 505, 899
Fsp4HI	GCNGC	3 cut(s)	164, 210, 517
FspBI	CTAG	3 cut(s)	522, 846, 930
GluI	GCNGC	3 cut(s)	164, 210, 517
GsaI	CCCAGC	3 cut(s)	323, 441, 890
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	36, 874, 955
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	2 cut(s)	374, 949
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	855
HinfI	GANTC	7 cut(s)	5, 91, 105, 533, 626, 748, 915
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	4 cut(s)	92, 100, 304, 1019
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	6 cut(s)	88, 136, 155, 254, 745, 930
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	4 cut(s)	44, 209, 472, 888
HpyCH4IV	ACGT	2 cut(s)	645, 941
HpyCH4V	TGCA	7 cut(s)	212, 241, 578, 793, 817, 949, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 513, 522, 814
HpyF3I	CTNAG	4 cut(s)	265, 348, 837, 1037
HpySE526I	ACGT	2 cut(s)	645, 941
Hsp92II	CATG	2 cut(s)	374, 949
Ksp22I	TGATCA	2 cut(s)	157, 988
Kzo9I	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
LmnI	GCTCC	3 cut(s)	425, 434, 1021
Lsp1109I	GCAGC	3 cut(s)	175, 196, 528
LweI	GCATC	5 cut(s)	516, 814, 831, 859, 925
MaeI	CTAG	3 cut(s)	522, 846, 930
MaeII	ACGT	2 cut(s)	645, 941
MaeIII	GTNAC	2 cut(s)	98, 1025
MalI	GATC	7 cut(s)	159, 443, 492, 654, 702, 723, 990
MboI	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
MboII	GAAGA	5 cut(s)	6, 9, 482, 654, 743
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	4 cut(s)	266, 499, 505, 899
MlsI	TGGCCA	1 cut(s)	955
MluCI	AATT	4 cut(s)	324, 384, 637, 861
MluNI	TGGCCA	1 cut(s)	955
MlyI	GAGTC	2 cut(s)	99, 757
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	9 cut(s)	19, 53, 73, 105, 132, 288, 468, 475, 885
Mox20I	TGGCCA	1 cut(s)	955
Mph1103I	ATGCAT	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	955
MseI	TTAA	5 cut(s)	39, 381, 641, 771, 1060
MslI	CAYNNNNRTG	1 cut(s)	984
Msp20I	TGGCCA	1 cut(s)	955
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	400, 1013
MvaI	CCWGG	2 cut(s)	400, 1013
MwoI	GCNNNNNNNGC	4 cut(s)	434, 513, 522, 814
NdeII	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
NlaIII	CATG	2 cut(s)	374, 949
NlaIV	GGNNCC	2 cut(s)	780, 1017
NmuCI	GTSAC	2 cut(s)	98, 1025
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	1 cut(s)	949
PfeI	GAWTC	5 cut(s)	5, 91, 533, 626, 915
PkrI	GCNGC	3 cut(s)	165, 211, 518
Ple19I	CGATCG	1 cut(s)	493
PleI	GAGTC	2 cut(s)	99, 756
PpsI	GAGTC	2 cut(s)	99, 756
Ppu21I	YACGTR	1 cut(s)	942
Psp6I	CCWGG	2 cut(s)	398, 1011
PspFI	CCCAGC	3 cut(s)	319, 437, 886
PspGI	CCWGG	2 cut(s)	398, 1011
PspN4I	GGNNCC	2 cut(s)	780, 1017
PspPI	GGNCC	1 cut(s)	872
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	652
PvuI	CGATCG	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	4 cut(s)	488, 706, 821, 944
RsaNI	GTAC	4 cut(s)	487, 705, 820, 943
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	5 cut(s)	39, 381, 641, 771, 1060
SatI	GCNGC	3 cut(s)	164, 210, 517
Sau3AI	GATC	7 cut(s)	157, 441, 490, 652, 700, 721, 988
Sau96I	GGNCC	1 cut(s)	872
SchI	GAGTC	2 cut(s)	99, 757
ScrFI	CCNGG	2 cut(s)	400, 1013
SduI	GDGCHC	4 cut(s)	266, 499, 505, 899
SfaNI	GCATC	5 cut(s)	516, 814, 831, 859, 925
SmiMI	CAYNNNNRTG	1 cut(s)	984
SnaBI	TACGTA	1 cut(s)	942
Sse9I	AATT	4 cut(s)	324, 384, 637, 861
SsiI	CCGC	1 cut(s)	806
SspMI	CTAG	3 cut(s)	522, 846, 930
StyD4I	CCNGG	2 cut(s)	398, 1011
StyI	CCWWGG	1 cut(s)	845
TaiI	ACGT	2 cut(s)	648, 944
TaqI	TCGA	5 cut(s)	78, 171, 202, 670, 724
TasI	AATT	4 cut(s)	324, 384, 637, 861
TfiI	GAWTC	5 cut(s)	5, 91, 533, 626, 915
Tru1I	TTAA	5 cut(s)	39, 381, 641, 771, 1060
Tru9I	TTAA	5 cut(s)	39, 381, 641, 771, 1060
TscAI	CASTG	1 cut(s)	956
TseFI	GTSAC	2 cut(s)	98, 1025
TseI	GCWGC	3 cut(s)	163, 209, 516
Tsp45I	GTSAC	2 cut(s)	98, 1025
TspDTI	ATGAA	5 cut(s)	434, 615, 654, 747, 1034
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	956
XapI	RAATTY	1 cut(s)	637
XbaI	TCTAGA	1 cut(s)	929
XceI	RCATGY	1 cut(s)	949
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	845
XspI	CTAG	3 cut(s)	522, 846, 930
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.