Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013794

Physical Location & Seq

Genomic Coordinates Reverse (-)

17520273 .. 17522793

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTTTGTTGCGGTGGTGCGGATGAGGAACCCGCCGGTCCGCCCGCAAACCAGTATGCAGCCCCTCCTAACAAAGCCGGAAATCCCAATTTTGGCGGTGGGAATAGAGGGGAACCGAGGAATCCGAATGCACCGAGATCAGGAGCTCCTGCAAAGGTTTTGCCCATAGAGATCCCTTCTGTTGCATTGGATGAGTTGAACAGAATGGCGGGTAACTTCGGAAACAAGGCACTGATCGGTGAAGGTTCTTATGGACGTGTCTTCTGCGGCAAGTTTAAAGGAGAAGCTGTTGCTATCAAGAAACTTGATGCTAGTTCTTCTGAAGAACCTGACTCAGATTTCACCTCACAGTTATCGGTGGTATCGCGGCTCAAACACGACCATTTTGTGGAGTTGCTGGGGTACTGCTTGGAGGCAAATAATCGCATTCTCATTTACCAGTTTGCAACTAAAGGTTCTTTACATGATGTATTACACGGGAGAAAGGGAGTGCAAGGGGCTGAGCCAGGACCGGTGCTGAACTGGAACCAAAGGGTAAAGATTGCATATGGAGCAGCCAAAGGGCTTGAGTTCCTTCACGAGAAGGTCCAGCCACCAATAGTCCATAGGGACGTGAGGTCGAGCAATGTCTTGTTGTTTGATGACTTTGTGGCCAAAATGGCTGATTTCAACTTGACCAATGCTTCCTCCGATACCGCGGCTAGGCTTCATTCTACTCGTGTTTTGGGAACATTCGGCTACCACGCTCCAGAGTATGCAATGACAGGACAGATAACGCAGAAGAGTGATGTGTATAGTTTTGGTGTTGTGCTATTGGAGCTCTTGACAGGAAGAAAACCCGTAGATCATACCATGCCTAAAGGCCAACAAAGTCTTGTTACTTGGGCAACACCGAGACTAAGTGAAGACAAAGTGAAACAATGCATAGATCCTAAGCTTAACAATGACTTTCCTCCCAAAGCAGTCGCCAAGTTGGCAGCCGTGGCGGCCTTGTGTGTTCAGTATGAGGCAGATTTCCGACCAAACATGACCATCGTTGTCAAGGCACTTCAGCCTCTTCTAAACTCTAAACCGGCCGGTCCTGAGTCTACGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

365

Amino Acids

39.38

Weight (kDa)

8.41

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	76 - 293	1.3e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	78 - 350	3.2e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41970 AT2G41970
fragaria_vesca	FvH4_6g21920 FvH4_6g21920
malus_domestica	MD12G1055000.v1.1 MD14G1054200.v1.1
prunus_persica	Prupe.7G080900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479251
rosa_laevigata	RLG00000023590
rosa_multiflora	Rmu_sc0002978.1_g000007
rosa_roxburghii	Rroxscaffold_6G00402490
rosa_rugosa	Rorug03G0173300
rosa_samantha	Rh3AG224300 Rh3AG224800 Rh3BG257300 Rh3DG249000
rosa_wichuraiana	Rw3G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	1088
AccII	CGCG	2 cut(s)	367, 698
AclWI	GGATC	2 cut(s)	166, 923
AcoI	YGGCCR	2 cut(s)	651, 1074
AcuI	CTGAAG	2 cut(s)	342, 1034
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	4 cut(s)	92, 140, 388, 702
AflIII	ACRYGT	1 cut(s)	256
AgeI	ACCGGT	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	199, 670
AhdI	GACNNNNNGTC	1 cut(s)	616
AjiI	CACGTC	2 cut(s)	257, 613
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	4 cut(s)	146, 287, 820, 937
AluI	AGCT	4 cut(s)	146, 287, 820, 937
Alw21I	GWGCWC	2 cut(s)	148, 822
Alw26I	GTCTC	1 cut(s)	889
AlwI	GGATC	2 cut(s)	166, 923
AoxI	GGCC	4 cut(s)	651, 862, 987, 1074
ApeKI	GCWGC	3 cut(s)	59, 554, 977
AsiGI	ACCGGT	1 cut(s)	511
AspS9I	GGNCC	4 cut(s)	38, 509, 586, 1079
AsuHPI	GGTGA	2 cut(s)	251, 334
AvaII	GGWCC	4 cut(s)	38, 509, 586, 1079
BalI	TGGCCA	1 cut(s)	653
BanII	GRGCYC	2 cut(s)	148, 822
BauI	CACGAG	2 cut(s)	578, 717
BbsI	GAAGAC	2 cut(s)	253, 912
Bbv12I	GWGCWC	2 cut(s)	148, 822
BbvI	GCAGC	3 cut(s)	71, 566, 989
BccI	CCATC	1 cut(s)	1040
BceAI	ACGGC	1 cut(s)	965
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	889
BfaI	CTAG	2 cut(s)	312, 702
BglI	GCCNNNNNGGC	3 cut(s)	659, 974, 986
BisI	GCNGC	7 cut(s)	60, 268, 368, 555, 699, 978, 987
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	7 cut(s)	61, 269, 369, 556, 700, 979, 988
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	4 cut(s)	38, 509, 586, 1079
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmgBI	CACGTC	2 cut(s)	257, 613
BmgT120I	GGNCC	4 cut(s)	38, 509, 586, 1079
BmiI	GGNNCC	3 cut(s)	30, 114, 527
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	2 cut(s)	253, 912
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	933
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	116, 696, 981
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 140, 388, 702
Bse118I	RCCGGY	4 cut(s)	35, 511, 1072, 1076
Bse1I	ACTGG	3 cut(s)	52, 439, 527
Bse3DI	GCAATG	2 cut(s)	631, 765
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	116, 696, 981
BseGI	GGATG	2 cut(s)	28, 196
BseLI	CCNNNNNNNGG	4 cut(s)	92, 140, 388, 702
BseMI	GCAATG	2 cut(s)	631, 765
BseMII	CTCAG	3 cut(s)	348, 492, 1074
BseNI	ACTGG	3 cut(s)	52, 439, 527
BseX3I	CGGCCG	1 cut(s)	1074
BseXI	GCAGC	3 cut(s)	71, 566, 989
BseYI	CCCAGC	1 cut(s)	397
Bsh1236I	CGCG	2 cut(s)	367, 698
Bsh1285I	CGRYCG	1 cut(s)	1077
BshFI	GGCC	4 cut(s)	653, 864, 989, 1076
BshTI	ACCGGT	1 cut(s)	511
BsiEI	CGRYCG	1 cut(s)	1077
BsiHKAI	GWGCWC	2 cut(s)	148, 822
BsiSI	CCGG	5 cut(s)	36, 78, 512, 1073, 1077
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	4 cut(s)	92, 140, 388, 702
BsmAI	GTCTC	1 cut(s)	889
BsmFI	GGGAC	1 cut(s)	623
BsmI	GAATGC	2 cut(s)	133, 426
BsnI	GGCC	4 cut(s)	653, 864, 989, 1076
Bsp1286I	GDGCHC	2 cut(s)	148, 822
Bsp143I	GATC	5 cut(s)	137, 171, 234, 844, 928
Bsp1720I	GCTNAGC	1 cut(s)	501
BspANI	GGCC	4 cut(s)	653, 864, 989, 1076
BspCNI	CTCAG	3 cut(s)	347, 493, 1075
BspFNI	CGCG	2 cut(s)	367, 698
BspLI	GGNNCC	3 cut(s)	30, 114, 527
BspPI	GGATC	2 cut(s)	166, 923
BsrDI	GCAATG	2 cut(s)	631, 765
BsrFI	RCCGGY	4 cut(s)	35, 511, 1072, 1076
BsrI	ACTGG	3 cut(s)	52, 439, 527
BssAI	RCCGGY	4 cut(s)	35, 511, 1072, 1076
BssECI	CCNNGG	3 cut(s)	116, 696, 981
BssMI	GATC	5 cut(s)	137, 171, 234, 844, 928
BssSI	CACGAG	2 cut(s)	578, 717
Bst2BI	CACGAG	2 cut(s)	578, 717
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	2 cut(s)	776, 1062
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	5 cut(s)	334, 501, 899, 933, 1083
BstDSI	CCRYGG	2 cut(s)	696, 981
BstF5I	GGATG	2 cut(s)	28, 196
BstFNI	CGCG	2 cut(s)	367, 698
BstKTI	GATC	5 cut(s)	140, 174, 237, 847, 931
BstMAI	GTCTC	1 cut(s)	889
BstMBI	GATC	5 cut(s)	137, 171, 234, 844, 928
BstMCI	CGRYCG	1 cut(s)	1077
BstMWI	GCNNNNNNNGC	6 cut(s)	551, 659, 817, 974, 983, 986
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstUI	CGCG	2 cut(s)	367, 698
BstV1I	GCAGC	3 cut(s)	71, 566, 989
BstV2I	GAAGAC	2 cut(s)	253, 912
BstX2I	RGATCY	2 cut(s)	171, 928
BstYI	RGATCY	2 cut(s)	171, 928
BstZI	CGGCCG	1 cut(s)	1074
BsuRI	GGCC	4 cut(s)	653, 864, 989, 1076
BtgI	CCRYGG	2 cut(s)	696, 981
BtrI	CACGTC	2 cut(s)	257, 613
BtsCI	GGATG	2 cut(s)	28, 196
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	45
Cfr10I	RCCGGY	4 cut(s)	35, 511, 1072, 1076
Cfr13I	GGNCC	4 cut(s)	38, 509, 586, 1079
Cfr42I	CCGCGG	1 cut(s)	699
CpoI	CGGWCCG	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	403
CspAI	ACCGGT	1 cut(s)	511
CspI	CGGWCCG	1 cut(s)	38
CviAII	CATG	3 cut(s)	464, 853, 1027
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	5 cut(s)	334, 501, 899, 933, 1083
DpnI	GATC	5 cut(s)	139, 173, 236, 846, 930
DpnII	GATC	5 cut(s)	137, 171, 234, 844, 928
DraI	TTTAAA	1 cut(s)	277
DriI	GACNNNNNGTC	1 cut(s)	616
EaeI	YGGCCR	2 cut(s)	651, 1074
EagI	CGGCCG	1 cut(s)	1074
Eam1104I	CTCTTC	2 cut(s)	776, 1062
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	2 cut(s)	776, 1062
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	2 cut(s)	146, 820
EclXI	CGGCCG	1 cut(s)	1074
Eco24I	GRGCYC	2 cut(s)	148, 822
Eco47I	GGWCC	4 cut(s)	38, 509, 586, 1079
Eco52I	CGGCCG	1 cut(s)	1074
Eco53kI	GAGCTC	2 cut(s)	146, 820
Eco57I	CTGAAG	2 cut(s)	342, 1034
EcoICRI	GAGCTC	2 cut(s)	146, 820
EcoRII	CCWGG	1 cut(s)	505
EcoT22I	ATGCAT	1 cut(s)	926
EcoT38I	GRGCYC	2 cut(s)	148, 822
FaeI	CATG	3 cut(s)	467, 856, 1030
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	3 cut(s)	463, 852, 1026
FauI	CCCGC	3 cut(s)	40, 52, 202
FauNDI	CATATG	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	1088
Fnu4HI	GCNGC	7 cut(s)	60, 268, 368, 555, 699, 978, 987
FokI	GGATG	2 cut(s)	35, 203
FriOI	GRGCYC	2 cut(s)	148, 822
Fsp4HI	GCNGC	7 cut(s)	60, 268, 368, 555, 699, 978, 987
FspBI	CTAG	2 cut(s)	312, 702
GluI	GCNGC	7 cut(s)	60, 268, 368, 555, 699, 978, 987
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	4 cut(s)	653, 864, 989, 1076
HapII	CCGG	5 cut(s)	36, 78, 512, 1073, 1077
Hin1II	CATG	3 cut(s)	467, 856, 1030
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	3 cut(s)	121, 332, 1085
HpaII	CCGG	5 cut(s)	36, 78, 512, 1073, 1077
HphI	GGTGA	2 cut(s)	251, 334
Hpy166II	GTNNAC	1 cut(s)	1089
Hpy188I	TCNGA	6 cut(s)	126, 221, 322, 337, 691, 1019
Hpy188III	TCNNGA	6 cut(s)	141, 298, 578, 749, 823, 1082
Hpy8I	GTNNAC	1 cut(s)	1089
HpyAV	CCTTC	4 cut(s)	186, 236, 577, 584
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4IV	ACGT	3 cut(s)	256, 612, 1091
HpyCH4V	TGCA	9 cut(s)	59, 131, 152, 185, 446, 493, 545, 758, 924
HpyF10VI	GCNNNNNNNGC	6 cut(s)	551, 659, 817, 974, 983, 986
HpyF3I	CTNAG	5 cut(s)	334, 501, 899, 933, 1083
HpySE526I	ACGT	3 cut(s)	256, 612, 1091
Hsp92II	CATG	3 cut(s)	467, 856, 1030
KspI	CCGCGG	1 cut(s)	699
Kzo9I	GATC	5 cut(s)	137, 171, 234, 844, 928
LmnI	GCTCC	5 cut(s)	143, 151, 551, 751, 817
Lsp1109I	GCAGC	3 cut(s)	71, 566, 989
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	312, 702
MaeII	ACGT	3 cut(s)	256, 612, 1091
MaeIII	GTNAC	2 cut(s)	212, 877
MalI	GATC	5 cut(s)	139, 173, 236, 846, 930
MboI	GATC	5 cut(s)	137, 171, 234, 844, 928
MboII	GAAGA	7 cut(s)	253, 309, 335, 793, 843, 917, 1049
MflI	RGATCY	2 cut(s)	171, 928
MhlI	GDGCHC	2 cut(s)	148, 822
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	653
MlyI	GAGTC	2 cut(s)	326, 1094
MmeI	TCCRAC	1 cut(s)	1042
Mox20I	TGGCCA	1 cut(s)	653
Mph1103I	ATGCAT	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	2 cut(s)	276, 939
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	5 cut(s)	36, 78, 512, 1073, 1077
MspR9I	CCNGG	1 cut(s)	507
Mva1269I	GAATGC	2 cut(s)	133, 426
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	2 cut(s)	367, 698
MwoI	GCNNNNNNNGC	6 cut(s)	551, 659, 817, 974, 983, 986
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	5 cut(s)	137, 171, 234, 844, 928
NlaIII	CATG	3 cut(s)	467, 856, 1030
NlaIV	GGNNCC	3 cut(s)	30, 114, 527
NsiI	ATGCAT	1 cut(s)	926
PctI	GAATGC	2 cut(s)	133, 426
PfeI	GAWTC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	388
PinAI	ACCGGT	1 cut(s)	511
PkrI	GCNGC	7 cut(s)	61, 269, 369, 556, 700, 979, 988
PleI	GAGTC	2 cut(s)	326, 1093
PpsI	GAGTC	2 cut(s)	326, 1093
Psp124BI	GAGCTC	2 cut(s)	148, 822
Psp6I	CCWGG	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	30, 114, 527
PspPI	GGNCC	4 cut(s)	38, 509, 586, 1079
PsuI	RGATCY	2 cut(s)	171, 928
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
Rsr2I	CGGWCCG	1 cut(s)	38
RsrII	CGGWCCG	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	148, 822
SacII	CCGCGG	1 cut(s)	699
SaqAI	TTAA	2 cut(s)	276, 939
SatI	GCNGC	7 cut(s)	60, 268, 368, 555, 699, 978, 987
Sau3AI	GATC	5 cut(s)	137, 171, 234, 844, 928
Sau96I	GGNCC	4 cut(s)	38, 509, 586, 1079
SchI	GAGTC	2 cut(s)	326, 1094
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	148, 822
SfaNI	GCATC	1 cut(s)	298
Sfr303I	CCGCGG	1 cut(s)	699
SgrBI	CCGCGG	1 cut(s)	699
SinI	GGWCC	4 cut(s)	38, 509, 586, 1079
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	1 cut(s)	88
SspMI	CTAG	2 cut(s)	312, 702
SstI	GAGCTC	2 cut(s)	148, 822
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	351
TaiI	ACGT	3 cut(s)	259, 615, 1094
TaqI	TCGA	1 cut(s)	620
TasI	AATT	1 cut(s)	88
TauI	GCSGC	4 cut(s)	270, 370, 701, 989
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	276, 939
Tru9I	TTAA	2 cut(s)	276, 939
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	3 cut(s)	59, 554, 977
TspDTI	ATGAA	1 cut(s)	698
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	4 cut(s)	38, 509, 586, 1079
XmiI	GTMKAC	1 cut(s)	1088
XspI	CTAG	2 cut(s)	312, 702
Zsp2I	ATGCAT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.