Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013794

Physical Location & Seq

Genomic Coordinates Reverse (-)

14652018 .. 14654739

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGTTCTTCAGGGCAGAGCAGCAACTACGATCTGTCGTTCAAGATCTTGCTGATCGGAGACTCTGCCGTTGGCAAAAGTAGTCTTCTTGTCAGCTTCATCTCCAACTCTGTCGACGATCTTGCTCCCACCATTGGTGTGGATTTTAAAATTAAGCTGCTTACTGTTGGTGGGAAGAGAATTAAGATGACAATTTGGGATACAGCTGGACAGGAGAGGTTTAGAACATTAACAAGCTCTTACTATAGAAGTGCCCAAGGAATCATTCTCGTGTATGATGTGACTCGGAGAGACACCTTTACCAACTTATCAGATGTATGGGCTAAAGAAGTGGAACTGTACTCAACTAATCAGGACTGTGTCAAGGTGCTTGTTGGGAATAAAGTTGACAGAGAATCTGAGAGGGCTGTGAGTAGAGAAGAGGGCATTGCTCTTGCAAAAGATATTGGATGCATGTTTCTTGAATGTAGTGCTAAGACTAGAGAAAATGTGGAGCGTTGCTTTCAAGAGCTAGCATTAAAGATAATGGAGATTCCTAGCCTCTTAGAAGAGGGTTCTACTGTAGCAAAGAGAAACATTTTGAAGCAGAACCAAGAAAATCAAGCACCTCCTAGTTGTTGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

208

Amino Acids

23.08

Weight (kDa)

5.71

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	11 - 172	1.5e-18	ADP-ribosylation factor family
Ras	PF00071	15 - 176	1.8e-56	Ras family
Roc	PF08477	15 - 130	1.1e-30	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41970 AT2G41970
fragaria_vesca	FvH4_6g21920 FvH4_6g21920
malus_domestica	MD12G1055000.v1.1 MD14G1054200.v1.1
prunus_persica	Prupe.7G080900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479251
rosa_laevigata	RLG00000023590
rosa_multiflora	Rmu_sc0002978.1_g000007
rosa_roxburghii	Rroxscaffold_6G00402490
rosa_rugosa	Rorug03G0173300
rosa_samantha	Rh3AG224300 Rh3AG224800 Rh3BG257300 Rh3DG249000
rosa_wichuraiana	Rw3G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	43, 464, 506, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	5 cut(s)	96, 157, 206, 237, 511
AluI	AGCT	5 cut(s)	96, 157, 206, 237, 511
Alw26I	GTCTC	2 cut(s)	54, 285
ApeKI	GCWGC	2 cut(s)	21, 157
AsuNHI	GCTAGC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	33, 144
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	54, 285
BfaI	CTAG	4 cut(s)	480, 512, 537, 612
BfmI	CTRYAG	2 cut(s)	244, 561
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	2 cut(s)	22, 158
BlsI	GCNGC	2 cut(s)	23, 159
BmsI	GCATC	1 cut(s)	440
BmtI	GCTAGC	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	33, 144
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	54, 285
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	31, 45, 54, 118
BspCNI	CTCAG	1 cut(s)	391
BspOI	GCTAGC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	31, 45, 54, 118
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	269
Bst4CI	ACNGT	4 cut(s)	166, 339, 359, 562
Bst6I	CTCTTC	3 cut(s)	170, 414, 543
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	399, 474, 544
BstF5I	GGATG	1 cut(s)	455
BstKTI	GATC	4 cut(s)	34, 48, 57, 121
BstMAI	GTCTC	2 cut(s)	54, 285
BstMBI	GATC	4 cut(s)	31, 45, 54, 118
BstNSI	RCATGY	1 cut(s)	457
BstSFI	CTRYAG	2 cut(s)	244, 561
BstSLI	GKGCMC	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	33, 144
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	454
CviJI	RGCY	8 cut(s)	96, 157, 206, 237, 323, 407, 511, 540
CviKI_1	RGCY	8 cut(s)	96, 157, 206, 237, 323, 407, 511, 540
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	399, 474, 544
DpnI	GATC	4 cut(s)	33, 47, 56, 120
DpnII	GATC	4 cut(s)	31, 45, 54, 118
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	170, 414, 543
EarI	CTCTTC	3 cut(s)	170, 414, 543
Eco130I	CCWWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	457
FaiI	YATR	4 cut(s)	246, 276, 319, 455
FatI	CATG	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	22, 158
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	22, 158
FspBI	CTAG	4 cut(s)	480, 512, 537, 612
GluI	GCNGC	2 cut(s)	22, 158
Hin1II	CATG	1 cut(s)	457
HincII	GTYRAC	2 cut(s)	115, 388
HindII	GTYRAC	2 cut(s)	115, 388
HinfI	GANTC	5 cut(s)	62, 261, 283, 395, 532
Hpy166II	GTNNAC	2 cut(s)	115, 388
Hpy188I	TCNGA	4 cut(s)	59, 288, 313, 400
Hpy188III	TCNNGA	4 cut(s)	43, 353, 461, 506
Hpy8I	GTNNAC	2 cut(s)	115, 388
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	4 cut(s)	166, 339, 359, 562
HpyCH4V	TGCA	2 cut(s)	437, 453
HpyF3I	CTNAG	3 cut(s)	399, 474, 544
Hsp92II	CATG	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	31, 45, 54, 118
LmnI	GCTCC	2 cut(s)	130, 493
LpnPI	CCDG	3 cut(s)	192, 197, 338
Lsp1109I	GCAGC	2 cut(s)	33, 144
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	4 cut(s)	480, 512, 537, 612
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	4 cut(s)	33, 47, 56, 120
MboI	GATC	4 cut(s)	31, 45, 54, 118
MboII	GAAGA	4 cut(s)	77, 187, 431, 560
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	3 cut(s)	150, 180, 192
MlyI	GAGTC	2 cut(s)	56, 277
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	210, 396, 415, 544, 551, 618
Mph1103I	ATGCAT	1 cut(s)	455
MseI	TTAA	5 cut(s)	147, 153, 183, 230, 518
MslI	CAYNNNNRTG	2 cut(s)	137, 269
MspA1I	CMGCKG	1 cut(s)	206
NdeII	GATC	4 cut(s)	31, 45, 54, 118
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	261, 395, 532
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	23, 159
PleI	GAGTC	2 cut(s)	56, 277
PpsI	GAGTC	2 cut(s)	56, 277
PsuI	RGATCY	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	137, 269
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	5 cut(s)	147, 153, 183, 230, 518
SatI	GCNGC	2 cut(s)	22, 158
Sau3AI	GATC	4 cut(s)	31, 45, 54, 118
SchI	GAGTC	2 cut(s)	56, 277
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	9 cut(s)	98, 159, 208, 221, 239, 299, 369, 513, 610
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	2 cut(s)	244, 561
SmiMI	CAYNNNNRTG	2 cut(s)	137, 269
Sse9I	AATT	3 cut(s)	150, 180, 192
SspMI	CTAG	4 cut(s)	480, 512, 537, 612
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	4 cut(s)	166, 339, 359, 562
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	150, 180, 192
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	3 cut(s)	261, 395, 532
Tru1I	TTAA	5 cut(s)	147, 153, 183, 230, 518
Tru9I	TTAA	5 cut(s)	147, 153, 183, 230, 518
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	2 cut(s)	21, 157
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	88
Tth111I	GACNNNGTC	1 cut(s)	359
XceI	RCATGY	1 cut(s)	457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	4 cut(s)	480, 512, 537, 612
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.