Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013794

Physical Location & Seq

Genomic Coordinates Reverse (-)

23092546 .. 23093866

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG224800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTCGTGCTGCGGCGGTGCGGAGGAGGAAAACTACGGCCCACCTGCCAACCAATATAACACTGCCCCACCCAGAGGGGGCGGTGGGAGTACATATGGAGGCGGAGGAAATGACAGAGGAGAGCCAAGGAGTTCCAATCCGGTAAAAAGTGGGGCTCCGGCAAAGGCCTTACCCATTGAAATTCCGGCTATTCCCTTGGATGAGTTAAATAGGCTAACGAGTAACTTCGGCCAAAAGGCTTTGATAGGAGAAGGTTCTTATGGCCGGGTTTTCTATGCAAAATTAAGTAATGGTAAGCCTGCTGCAATTAAAAAGTTGGATGCAGGTTCACAAGAGCCTGACTCAGATTTTGGATCTCAATTATCAACAGTGTCAAGACTTAAGCATGATCATTTTGTGGAGTTGATGGGGTATTGCTTAGAGGGAAATAATCGAATTTTGGTTTTCGAGTTTGCACAAATGGGATCTTTACATGACATATTGCATGGAAGGAAAGGAGTACAAGGAGCTGAGCCAGGTCCAGCTCTAAGTTGGAATCAGAGAATTAAAATTGCCTATGGTGCAGCCAAAGGCCTCGAGTATCTGCACGAAAAGGTTCAACCTTCCATTGTTCACCGGGATGTAAGATCCAGCAATGTCCTACTCTTCGATGATCATGTTGCCAAAATTGCAGACTTCAACTTGACGAATCAGTCATCTGACACAGCCGCGCGACTTCATTCGACTAGAGTTTTGGGAACTTTTGGCTATCATGCTCCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

254

Amino Acids

27.22

Weight (kDa)

6.76

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	78 - 254	2.2e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 254	6e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41970 AT2G41970
fragaria_vesca	FvH4_6g21920 FvH4_6g21920
malus_domestica	MD12G1055000.v1.1 MD14G1054200.v1.1
prunus_persica	Prupe.7G080900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479251
rosa_laevigata	RLG00000023590
rosa_multiflora	Rmu_sc0002978.1_g000007
rosa_roxburghii	Rroxscaffold_6G00402490
rosa_rugosa	Rorug03G0173300
rosa_samantha	Rh3AG224300 Rh3AG224800 Rh3BG257300 Rh3DG249000
rosa_wichuraiana	Rw3G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
AasI	GACNNNNNNGTC	1 cut(s)	691
Acc36I	ACCTGC	2 cut(s)	52, 314
AccII	CGCG	2 cut(s)	710, 712
AciI	CCGC	6 cut(s)	12, 15, 20, 81, 102, 708
AclWI	GGATC	3 cut(s)	361, 472, 621
AcoI	YGGCCR	2 cut(s)	229, 262
AcsI	RAATTY	2 cut(s)	180, 435
AfaI	GTAC	2 cut(s)	91, 501
AfiI	CCNNNNNNNGG	2 cut(s)	74, 77
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	179, 599, 679
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	2 cut(s)	509, 524
AluI	AGCT	2 cut(s)	509, 524
AlwI	GGATC	3 cut(s)	361, 472, 621
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	5 cut(s)	37, 165, 229, 262, 571
ApeKI	GCWGC	3 cut(s)	9, 302, 563
ApoI	RAATTY	2 cut(s)	180, 435
ArsI	GACNNNNNNTTYG	4 cut(s)	332, 364, 715, 747
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	2 cut(s)	38, 518
AsuC2I	CCSGG	2 cut(s)	266, 617
AsuHPI	GGTGA	1 cut(s)	605
AvaI	CYCGRG	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	289, 575
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	2 cut(s)	388, 652
BcnI	CCSGG	2 cut(s)	266, 617
BfaI	CTAG	1 cut(s)	726
BfrI	CTTAAG	1 cut(s)	380
BfuAI	ACCTGC	2 cut(s)	52, 314
BisI	GCNGC	5 cut(s)	10, 13, 303, 564, 708
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	5 cut(s)	11, 14, 304, 565, 709
Bme1390I	CCNGG	3 cut(s)	266, 516, 617
Bme18I	GGWCC	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	38, 518
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	266, 516, 617
BmsI	GCATC	1 cut(s)	310
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuMI	CCSGG	2 cut(s)	266, 617
BsaJI	CCNNGG	2 cut(s)	125, 195
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 77
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	2 cut(s)	125, 195
BseGI	GGATG	3 cut(s)	205, 325, 625
BseLI	CCNNNNNNNGG	2 cut(s)	74, 77
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	3 cut(s)	357, 501, 750
BseRI	GAGGAG	2 cut(s)	38, 132
BseXI	GCAGC	2 cut(s)	289, 575
BsgI	GTGCAG	2 cut(s)	569, 582
Bsh1236I	CGCG	2 cut(s)	710, 712
BshFI	GGCC	5 cut(s)	39, 167, 231, 264, 573
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	5 cut(s)	140, 158, 185, 265, 616
BslI	CCNNNNNNNGG	2 cut(s)	74, 77
BsnI	GGCC	5 cut(s)	39, 167, 231, 264, 573
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	5 cut(s)	353, 388, 464, 626, 652
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	6 cut(s)	12, 15, 20, 81, 102, 708
BspANI	GGCC	5 cut(s)	39, 167, 231, 264, 573
BspCNI	CTCAG	3 cut(s)	356, 502, 751
BspFNI	CGCG	2 cut(s)	710, 712
BspLI	GGNNCC	1 cut(s)	156
BspMI	ACCTGC	2 cut(s)	52, 314
BspPI	GGATC	3 cut(s)	361, 472, 621
BspTI	CTTAAG	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	125, 195
BssMI	GATC	5 cut(s)	353, 388, 464, 626, 652
BssT1I	CCWWGG	2 cut(s)	125, 195
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	650
BstAFI	CTTAAG	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	5 cut(s)	343, 418, 510, 527, 759
BstF5I	GGATG	3 cut(s)	205, 325, 625
BstFNI	CGCG	2 cut(s)	710, 712
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	5 cut(s)	356, 391, 467, 629, 655
BstMBI	GATC	5 cut(s)	353, 388, 464, 626, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 668
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	3 cut(s)	264, 514, 615
BstUI	CGCG	2 cut(s)	710, 712
BstV1I	GCAGC	2 cut(s)	289, 575
BstX2I	RGATCY	3 cut(s)	353, 464, 626
BstYI	RGATCY	3 cut(s)	353, 464, 626
BsuRI	GGCC	5 cut(s)	39, 167, 231, 264, 573
BtsCI	GGATG	3 cut(s)	205, 325, 625
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 375
BveI	ACCTGC	2 cut(s)	52, 314
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	2 cut(s)	38, 518
Csp6I	GTAC	2 cut(s)	90, 500
CviAII	CATG	5 cut(s)	386, 473, 485, 656, 752
CviQI	GTAC	2 cut(s)	90, 500
DdeI	CTNAG	5 cut(s)	343, 418, 510, 527, 759
DpnI	GATC	5 cut(s)	355, 390, 466, 628, 654
DpnII	GATC	5 cut(s)	353, 388, 464, 626, 652
DrdI	GACNNNNNNGTC	1 cut(s)	691
DseDI	GACNNNNNNGTC	1 cut(s)	691
EaeI	YGGCCR	2 cut(s)	229, 262
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	125, 195
Eco147I	AGGCCT	2 cut(s)	167, 573
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	2 cut(s)	125, 195
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	125, 195
FaeI	CATG	5 cut(s)	389, 476, 488, 659, 755
FatI	CATG	5 cut(s)	385, 472, 484, 655, 751
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	2 cut(s)	388, 652
Fnu4HI	GCNGC	5 cut(s)	10, 13, 303, 564, 708
FokI	GGATG	3 cut(s)	212, 332, 632
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	5 cut(s)	10, 13, 303, 564, 708
FspBI	CTAG	1 cut(s)	726
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	5 cut(s)	10, 13, 303, 564, 708
HaeIII	GGCC	5 cut(s)	39, 167, 231, 264, 573
HapII	CCGG	5 cut(s)	140, 158, 185, 265, 616
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	5 cut(s)	389, 476, 488, 659, 755
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HinfI	GANTC	3 cut(s)	341, 535, 688
HpaII	CCGG	5 cut(s)	140, 158, 185, 265, 616
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	2 cut(s)	329, 613
Hpy188I	TCNGA	3 cut(s)	346, 540, 700
Hpy188III	TCNNGA	2 cut(s)	375, 758
Hpy8I	GTNNAC	2 cut(s)	329, 613
HpyAV	CCTTC	3 cut(s)	245, 483, 612
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	8 cut(s)	278, 305, 323, 455, 484, 563, 586, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 668
HpyF3I	CTNAG	5 cut(s)	343, 418, 510, 527, 759
Hsp92II	CATG	5 cut(s)	389, 476, 488, 659, 755
HspAI	GCGC	1 cut(s)	710
Ksp22I	TGATCA	2 cut(s)	388, 652
Kzo9I	GATC	5 cut(s)	353, 388, 464, 626, 652
LmnI	GCTCC	3 cut(s)	160, 506, 760
Lsp1109I	GCAGC	2 cut(s)	289, 575
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	726
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	5 cut(s)	355, 390, 466, 628, 654
MboI	GATC	5 cut(s)	353, 388, 464, 626, 652
MboII	GAAGA	1 cut(s)	637
MflI	RGATCY	3 cut(s)	353, 464, 626
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	8 cut(s)	180, 281, 306, 359, 435, 543, 549, 666
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	297, 512
MnlI	CCTC	8 cut(s)	16, 19, 68, 92, 98, 110, 415, 584
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	5 cut(s)	206, 284, 309, 381, 546
MslI	CAYNNNNRTG	1 cut(s)	618
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	5 cut(s)	140, 158, 185, 265, 616
MspR9I	CCNGG	3 cut(s)	266, 516, 617
MvaI	CCWGG	1 cut(s)	516
MvnI	CGCG	2 cut(s)	710, 712
MwoI	GCNNNNNNNGC	2 cut(s)	560, 668
NciI	CCSGG	2 cut(s)	266, 617
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	5 cut(s)	353, 388, 464, 626, 652
NlaIII	CATG	5 cut(s)	389, 476, 488, 659, 755
NlaIV	GGNNCC	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	575
PaqCI	CACCTGC	1 cut(s)	52
PceI	AGGCCT	2 cut(s)	167, 573
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	535, 688
PkrI	GCNGC	5 cut(s)	11, 14, 304, 565, 709
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	38, 518
PspXI	VCTCGAGB	1 cut(s)	575
PsuI	RGATCY	3 cut(s)	353, 464, 626
RsaI	GTAC	2 cut(s)	91, 501
RsaNI	GTAC	2 cut(s)	90, 500
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	5 cut(s)	206, 284, 309, 381, 546
SatI	GCNGC	5 cut(s)	10, 13, 303, 564, 708
Sau3AI	GATC	5 cut(s)	353, 388, 464, 626, 652
Sau96I	GGNCC	2 cut(s)	38, 518
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	3 cut(s)	266, 516, 617
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	8 cut(s)	46, 256, 328, 511, 520, 526, 597, 604
SfaNI	GCATC	1 cut(s)	310
Sfr274I	CTCGAG	1 cut(s)	575
SinI	GGWCC	1 cut(s)	518
SlaI	CTCGAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	380, 575
SmoI	CTYRAG	2 cut(s)	380, 575
Sse9I	AATT	8 cut(s)	180, 281, 306, 359, 435, 543, 549, 666
SseBI	AGGCCT	2 cut(s)	167, 573
SsiI	CCGC	6 cut(s)	12, 15, 20, 81, 102, 708
SspMI	CTAG	1 cut(s)	726
StuI	AGGCCT	2 cut(s)	167, 573
StyD4I	CCNGG	3 cut(s)	264, 514, 615
StyI	CCWWGG	2 cut(s)	125, 195
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	5 cut(s)	433, 447, 576, 648, 722
TasI	AATT	8 cut(s)	180, 281, 306, 359, 435, 543, 549, 666
TatI	WGTACW	2 cut(s)	89, 499
TauI	GCSGC	2 cut(s)	15, 710
TfiI	GAWTC	2 cut(s)	535, 688
Tru1I	TTAA	5 cut(s)	206, 284, 309, 381, 546
Tru9I	TTAA	5 cut(s)	206, 284, 309, 381, 546
TscAI	CASTG	2 cut(s)	67, 375
TseI	GCWGC	3 cut(s)	9, 302, 563
TspDTI	ATGAA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	67, 375
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	2 cut(s)	180, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XhoI	CTCGAG	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.