Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013794

Physical Location & Seq

Genomic Coordinates Reverse (-)

6197001 .. 6205847

Gene Structure 8847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1055000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATGTGTTGCGGGGGTGCGGAGGAGGAAAACTTCGGCCCGCCTGCTAATCAATACACCGCCCCACCCAGAGGTGGGAATACATATGGAGGAGGAGGAGGAGGAGGCAATGACAGGGGAGAGCCAAGGGGTTCTAATAGGGTCAAAAGCGGAGCTCCACAGAAGGTCTTACCGATCGAAATACCATCTATGTCTTTGGATGAACTAAATAGGTTAACGGGTAACTTTGGTCAGAAGGCTTTGATAGGAGAAGGTTCTTATGGCCGGGTTTTCCATGCAAAATTGAGTAATGGTAAGGCTGCTGCAATAAAGAAATTGGATACAGGTTCATCACAAGAGGACTCTGATTTTTCAGCACAATTATCAACAGTGTCAAGACTTAAGCATGAGCATTTTGTGGAGTTGATGGGGTATTGCTTGGAGACAAATAACCGAATTTTGATATATGAGTTTGCAGCCATGGGATCTTTACATGACATATTACATGGAAGGAAAGGAGTACAAGGGGCTGAACCGGGTCCAGTTCTTAGTTGGAATCAGAGAATTAAAATTGCCTTTGGTGCAGCCAAAGGCCTTGAGTATCTCCACGAAAAGGTTCAACCTTCAATTGTTCACCGCGACATCAGATCTAGCAACGTCCTGCTCTTTGATGACCATGTTGCCAAAATTGCGGACTTCAACTTGACAAATCAGTCATCAGACACAGCAGCGCGACTGCACTCGACTAGAGTCTTGGGAACATTTGGCTATCATGCTCCTGAGTATGCGATGACAGGACAAATTACTCAGAAGAGTGATGTTTACAGTTTTGGGGTTGTTTTACTAGAGCTTTTGACAGGGAGAAAGCCTGTAGATCATACAATGCCGAAGGGGCAACAAAGTCTTGTTACTTGGGCAACTCCAAGATTGAGCGAGGACAAAGTGAAGCAGTGTGTTGATCCCAAGCTAAACAATGACTGCCCACCAAAGGCAATTGCTAAGTTGGCAGCAGTGGCAGCACTTTGTGTACAGTACGAAGCTGACTTCAGGCCAAACATGACCATCGTTGTGAAGGCTTTACAGCCACTGCTAAACGCAAAACCTGCAGGCCCAGAGTCAAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

369

Amino Acids

39.71

Weight (kDa)

8.42

Isoelectric Point (pI)

24.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	78 - 295	1.4e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 353	5.8e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41970 AT2G41970
fragaria_vesca	FvH4_6g21920 FvH4_6g21920
malus_domestica	MD12G1055000.v1.1 MD14G1054200.v1.1
prunus_persica	Prupe.7G080900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479251
rosa_laevigata	RLG00000023590
rosa_multiflora	Rmu_sc0002978.1_g000007
rosa_roxburghii	Rroxscaffold_6G00402490
rosa_rugosa	Rorug03G0173300
rosa_samantha	Rh3AG224300 Rh3AG224800 Rh3BG257300 Rh3DG249000
rosa_wichuraiana	Rw3G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	691
Acc36I	ACCTGC	1 cut(s)	1090
AccII	CGCG	2 cut(s)	618, 712
AciI	CCGC	7 cut(s)	12, 20, 41, 60, 150, 616, 671
AclWI	GGATC	2 cut(s)	472, 932
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	1009
AdeI	CACNNNGTG	1 cut(s)	1004
AfaI	GTAC	3 cut(s)	501, 1008, 1013
AfiI	CCNNNNNNNGG	5 cut(s)	71, 74, 75, 592, 967
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	599, 606, 679
AluBI	AGCT	4 cut(s)	155, 829, 946, 1019
AluI	AGCT	4 cut(s)	155, 829, 946, 1019
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	472, 932
AlwNI	CAGNNNCTG	1 cut(s)	1066
AoxI	GGCC	5 cut(s)	37, 262, 571, 1028, 1087
ApeKI	GCWGC	7 cut(s)	299, 302, 455, 563, 707, 986, 995
ApoI	RAATTY	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	3 cut(s)	38, 518, 1088
AsuC2I	CCSGG	2 cut(s)	266, 516
AsuHPI	GGTGA	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	7 cut(s)	286, 289, 467, 575, 719, 998, 1007
BccI	CCATC	3 cut(s)	193, 400, 1049
BciVI	GTATCC	1 cut(s)	313
BcnI	CCSGG	2 cut(s)	266, 516
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	3 cut(s)	630, 726, 824
BfmI	CTRYAG	2 cut(s)	849, 1083
BfrI	CTTAAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	1090
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	871
BglII	AGATCT	1 cut(s)	626
BisI	GCNGC	7 cut(s)	300, 303, 456, 564, 708, 987, 996
BlsI	GCNGC	7 cut(s)	301, 304, 457, 565, 709, 988, 997
Bme1390I	CCNGG	2 cut(s)	266, 516
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	3 cut(s)	38, 518, 1088
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	2 cut(s)	266, 516
BoxI	GACNNNNGTC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	2 cut(s)	266, 516
BsaJI	CCNNGG	2 cut(s)	125, 459
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 74, 75, 592, 967
Bse1I	ACTGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	125, 459
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	5 cut(s)	71, 74, 75, 592, 967
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	2 cut(s)	750, 800
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	6 cut(s)	38, 105, 108, 111, 114, 117
BseXI	GCAGC	7 cut(s)	286, 289, 467, 575, 719, 998, 1007
BsgI	GTGCAG	2 cut(s)	582, 701
Bsh1236I	CGCG	2 cut(s)	618, 712
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	39, 264, 573, 1030, 1089
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	265, 515
BslI	CCNNNNNNNGG	5 cut(s)	71, 74, 75, 592, 967
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	5 cut(s)	39, 264, 573, 1030, 1089
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	1006
Bsp143I	GATC	5 cut(s)	174, 464, 626, 853, 937
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	7 cut(s)	12, 20, 41, 60, 150, 616, 671
BspANI	GGCC	5 cut(s)	39, 264, 573, 1030, 1089
BspCNI	CTCAG	2 cut(s)	751, 799
BspFNI	CGCG	2 cut(s)	618, 712
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	1090
BspPI	GGATC	2 cut(s)	472, 932
BspTI	CTTAAG	1 cut(s)	380
BsrDI	GCAATG	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	1006
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	125, 459
BssMI	GATC	5 cut(s)	174, 464, 626, 853, 937
BssT1I	CCWWGG	2 cut(s)	125, 459
Bst4CI	ACNGT	3 cut(s)	370, 806, 1011
Bst6I	CTCTTC	1 cut(s)	785
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	1082
BstAUI	TGTACA	1 cut(s)	1006
BstC8I	GCNNGC	3 cut(s)	41, 45, 1087
BstDEI	CTNAG	4 cut(s)	527, 759, 786, 978
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	618, 712
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	5 cut(s)	177, 467, 629, 856, 940
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	5 cut(s)	174, 464, 626, 853, 937
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	7 cut(s)	560, 668, 871, 983, 992, 995, 1082
BstPAI	GACNNNNGTC	1 cut(s)	728
BstSCI	CCNGG	2 cut(s)	264, 514
BstSFI	CTRYAG	2 cut(s)	849, 1083
BstUI	CGCG	2 cut(s)	618, 712
BstV1I	GCAGC	7 cut(s)	286, 289, 467, 575, 719, 998, 1007
BstX2I	RGATCY	2 cut(s)	464, 626
BstYI	RGATCY	2 cut(s)	464, 626
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	5 cut(s)	39, 264, 573, 1030, 1089
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	782
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	3 cut(s)	935, 996, 1064
BtsIMutI	CAGTG	4 cut(s)	375, 935, 996, 1064
BveI	ACCTGC	1 cut(s)	1090
Cac8I	GCNNGC	3 cut(s)	41, 45, 1087
CaiI	CAGNNNCTG	1 cut(s)	1066
CfoI	GCGC	1 cut(s)	712
Cfr13I	GGNCC	3 cut(s)	38, 518, 1088
Csp6I	GTAC	3 cut(s)	500, 1007, 1012
CviAII	CATG	8 cut(s)	275, 386, 460, 473, 485, 656, 752, 1036
CviQI	GTAC	3 cut(s)	500, 1007, 1012
DdeI	CTNAG	4 cut(s)	527, 759, 786, 978
DpnI	GATC	5 cut(s)	176, 466, 628, 855, 939
DpnII	GATC	5 cut(s)	174, 464, 626, 853, 937
DraIII	CACNNNGTG	1 cut(s)	1004
DrdI	GACNNNNNNGTC	1 cut(s)	691
DseDI	GACNNNNNNGTC	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	785
EarI	CTCTTC	1 cut(s)	785
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	125, 459
Eco147I	AGGCCT	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	1009
EcoICRI	GAGCTC	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	125, 459
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	125, 459
FaeI	CATG	8 cut(s)	278, 389, 463, 476, 488, 659, 755, 1039
FatI	CATG	8 cut(s)	274, 385, 459, 472, 484, 655, 751, 1035
FauI	CCCGC	2 cut(s)	5, 48
FauNDI	CATATG	1 cut(s)	85
Fnu4HI	GCNGC	7 cut(s)	300, 303, 456, 564, 708, 987, 996
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	7 cut(s)	300, 303, 456, 564, 708, 987, 996
FspBI	CTAG	3 cut(s)	630, 726, 824
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	7 cut(s)	300, 303, 456, 564, 708, 987, 996
HaeIII	GGCC	5 cut(s)	39, 264, 573, 1030, 1089
HapII	CCGG	2 cut(s)	265, 515
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	8 cut(s)	278, 389, 463, 476, 488, 659, 755, 1039
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	341, 535, 729, 1094
HpaI	GTTAAC	1 cut(s)	216
HpaII	CCGG	2 cut(s)	265, 515
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	4 cut(s)	216, 613, 802, 1007
Hpy188I	TCNGA	6 cut(s)	234, 346, 540, 626, 700, 789
Hpy188III	TCNNGA	2 cut(s)	375, 758
Hpy8I	GTNNAC	4 cut(s)	216, 613, 802, 1007
HpyAV	CCTTC	7 cut(s)	157, 229, 245, 483, 612, 862, 1045
HpyCH4III	ACNGT	3 cut(s)	370, 806, 1011
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	6 cut(s)	278, 305, 455, 563, 718, 1085
HpyF10VI	GCNNNNNNNGC	7 cut(s)	560, 668, 871, 983, 992, 995, 1082
HpyF3I	CTNAG	4 cut(s)	527, 759, 786, 978
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	8 cut(s)	278, 389, 463, 476, 488, 659, 755, 1039
HspAI	GCGC	1 cut(s)	710
KspAI	GTTAAC	1 cut(s)	216
Kzo9I	GATC	5 cut(s)	174, 464, 626, 853, 937
LmnI	GCTCC	3 cut(s)	152, 160, 760
Lsp1109I	GCAGC	7 cut(s)	286, 289, 467, 575, 719, 998, 1007
MaeI	CTAG	3 cut(s)	630, 726, 824
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	2 cut(s)	221, 886
MalI	GATC	5 cut(s)	176, 466, 628, 855, 939
MboI	GATC	5 cut(s)	174, 464, 626, 853, 937
MboII	GAAGA	1 cut(s)	802
MfeI	CAATTG	2 cut(s)	606, 972
MflI	RGATCY	2 cut(s)	464, 626
MhlI	GDGCHC	1 cut(s)	157
MlyI	GAGTC	3 cut(s)	335, 738, 1103
MmeI	TCCRAC	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	3 cut(s)	215, 381, 546
MslI	CAYNNNNRTG	1 cut(s)	1046
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	2 cut(s)	265, 515
MspR9I	CCNGG	2 cut(s)	266, 516
MunI	CAATTG	2 cut(s)	606, 972
MvnI	CGCG	2 cut(s)	618, 712
MwoI	GCNNNNNNNGC	7 cut(s)	560, 668, 871, 983, 992, 995, 1082
NciI	CCSGG	2 cut(s)	266, 516
NcoI	CCATGG	1 cut(s)	459
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	5 cut(s)	174, 464, 626, 853, 937
NlaIII	CATG	8 cut(s)	278, 389, 463, 476, 488, 659, 755, 1039
NlaIV	GGNNCC	1 cut(s)	519
PceI	AGGCCT	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	7 cut(s)	301, 304, 457, 565, 709, 988, 997
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	3 cut(s)	335, 737, 1102
PpsI	GAGTC	3 cut(s)	335, 737, 1102
PshAI	GACNNNNGTC	1 cut(s)	728
Psp124BI	GAGCTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	3 cut(s)	38, 518, 1088
PstI	CTGCAG	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	1066
PsuI	RGATCY	2 cut(s)	464, 626
PvuI	CGATCG	1 cut(s)	177
RsaI	GTAC	3 cut(s)	501, 1008, 1013
RsaNI	GTAC	3 cut(s)	500, 1007, 1012
RseI	CAYNNNNRTG	1 cut(s)	1046
SacI	GAGCTC	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	215, 381, 546
SatI	GCNGC	7 cut(s)	300, 303, 456, 564, 708, 987, 996
Sau3AI	GATC	5 cut(s)	174, 464, 626, 853, 937
Sau96I	GGNCC	3 cut(s)	38, 518, 1088
SbfI	CCTGCAGG	1 cut(s)	1087
SchI	GAGTC	3 cut(s)	335, 738, 1103
ScrFI	CCNGG	2 cut(s)	266, 516
SdaI	CCTGCAGG	1 cut(s)	1087
SduI	GDGCHC	1 cut(s)	157
SfcI	CTRYAG	2 cut(s)	849, 1083
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	2 cut(s)	380, 575
SmoI	CTYRAG	2 cut(s)	380, 575
Sse8387I	CCTGCAGG	1 cut(s)	1087
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	7 cut(s)	12, 20, 41, 60, 150, 616, 671
SspMI	CTAG	3 cut(s)	630, 726, 824
SstI	GAGCTC	1 cut(s)	157
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	264, 514
StyI	CCWWGG	2 cut(s)	125, 459
TaaI	ACNGT	3 cut(s)	370, 806, 1011
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	2 cut(s)	177, 722
TatI	WGTACW	2 cut(s)	499, 1006
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	3 cut(s)	215, 381, 546
Tru9I	TTAA	3 cut(s)	215, 381, 546
TscAI	CASTG	4 cut(s)	375, 935, 996, 1071
TseI	GCWGC	7 cut(s)	299, 302, 455, 563, 707, 986, 995
TspDTI	ATGAA	2 cut(s)	216, 318
TspRI	CASTG	4 cut(s)	375, 935, 996, 1071
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	3 cut(s)	630, 726, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.