Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009288

Physical Location & Seq

Genomic Coordinates Forward (+)

17590069 .. 17591860

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATCCAGCTGAAATGAGATATTTGGAAGAAGAGGATGGTCCGTTGATGAAGACAATCAAAGGTAGTATCACTGGTTTTGGTGCTGGGACTATTTACGGAACCATTTTAGCCACATGGAAAGATGTTCCAAGAGTGGAGAGAAATGTGGCTCTTCCAGGACTTATTAGAACACTGAAGATGATGGGAACCCATGGGCTGACTTTTGCTGCTATAGGAGGTGTTTACATCGGTGTTGAACAGCTGGTTCAGAATTTTAGATCCAAGAGAGATTTTTACAATGGTGCTATTGGTGGTTTTGTCGCTGGAGCTTCTGTGCTTGGCTATAGAGCAAGGAGCATCCCGACAGCGATAGCTGCAGGTGCAACACTAGCTGTTACCTCTGCTTTGATTGATTCTGGAGGTCAGACCACAAGAGTAGACAATGGCAGAGAATACTATCCTTACACCGTCGAGAAAAGAGCTGAAGCTGATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019866 GO:0019867 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046983 GO:0051179 GO:0051641 GO:0070469 GO:0070727 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

159

Amino Acids

17.0

Weight (kDa)

7.93

Isoelectric Point (pI)

25.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	16 - 128	2.6e-18	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42210 AT2G42210 AT2G42210 AT2G42210 AT2G42210
fragaria_vesca	FvH4_6g22680
malus_domestica	MD12G1061000.v1.1 MD14G1060700.v1.1
prunus_persica	Prupe.7G073800_v2.0.a1 Prupe.7G073800_v2.0.a1
pyrus_communis	pycom12g05390 pycom14g04920
rosa_chinensis	RchiOBHm_Chr3g0480261
rosa_laevigata	RLG00000023507
rosa_multiflora	Rmu_sc0000311.1_g000002
rosa_roxburghii	Rroxscaffold_6G00401670
rosa_rugosa	Rorug03G0181800
rosa_samantha	Rh3AG233200 Rh3BG265900 Rh3CG263400 Rh3DG259000
rosa_wichuraiana	Rw3G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	420
AclWI	GGATC	2 cut(s)	12, 255
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	239
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	7 cut(s)	11, 244, 311, 356, 374, 464, 470
AluI	AGCT	7 cut(s)	11, 244, 311, 356, 374, 464, 470
AlwI	GGATC	2 cut(s)	12, 255
ApeKI	GCWGC	2 cut(s)	209, 356
ApoI	RAATTY	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	196, 343
BccI	CCATC	2 cut(s)	32, 178
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	3 cut(s)	213, 325, 357
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	2 cut(s)	210, 357
BlsI	GCNGC	2 cut(s)	211, 358
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	6, 103, 190
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	2 cut(s)	327, 420
BsaJI	CCNNGG	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bse1I	ACTGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	43, 339
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	196, 343
BseYI	CCCAGC	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	4, 260
Bsp19I	CCATGG	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	6, 103, 190
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	12, 255
BspQI	GCTCTTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	4, 260
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	2 cut(s)	27, 159
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	43, 339
BstKTI	GATC	2 cut(s)	7, 263
BstMBI	GATC	2 cut(s)	4, 260
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 362, 371
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	3 cut(s)	213, 325, 357
BstV1I	GCAGC	2 cut(s)	196, 343
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	4, 260
BstYI	RGATCY	2 cut(s)	4, 260
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	43, 339
BtsIMutI	CAGTG	2 cut(s)	72, 173
BveI	ACCTGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	41
CviAII	CATG	2 cut(s)	117, 194
DpnI	GATC	2 cut(s)	6, 262
DpnII	GATC	2 cut(s)	4, 260
Eam1104I	CTCTTC	2 cut(s)	27, 159
EarI	CTCTTC	2 cut(s)	27, 159
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	120, 197
FaiI	YATR	4 cut(s)	118, 195, 215, 327
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	116, 193
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	210, 357
FokI	GGATG	2 cut(s)	50, 326
Fsp4HI	GCNGC	2 cut(s)	210, 357
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	2 cut(s)	210, 357
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	2 cut(s)	327, 420
Hin1II	CATG	2 cut(s)	120, 197
HinfI	GANTC	2 cut(s)	395, 473
Hpy166II	GTNNAC	2 cut(s)	226, 421
Hpy188I	TCNGA	2 cut(s)	252, 408
Hpy188III	TCNNGA	4 cut(s)	343, 399, 454, 477
Hpy8I	GTNNAC	2 cut(s)	226, 421
Hpy99I	CGWCG	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	2 cut(s)	359, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 362, 371
Hsp92II	CATG	2 cut(s)	120, 197
Kzo9I	GATC	2 cut(s)	4, 260
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	308, 336
LpnPI	CCDG	9 cut(s)	21, 60, 72, 144, 171, 230, 291, 345, 384
Lsp1109I	GCAGC	2 cut(s)	196, 343
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	6, 262
MboI	GATC	2 cut(s)	4, 260
MboII	GAAGA	5 cut(s)	41, 44, 64, 146, 190
MflI	RGATCY	2 cut(s)	4, 260
MluCI	AATT	1 cut(s)	253
MnlI	CCTC	4 cut(s)	28, 212, 391, 395
MspA1I	CMGCKG	2 cut(s)	11, 244
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	356, 362, 371
NcoI	CCATGG	1 cut(s)	193
NdeII	GATC	2 cut(s)	4, 260
NlaIII	CATG	2 cut(s)	120, 197
NlaIV	GGNNCC	3 cut(s)	6, 103, 190
PaqCI	CACCTGC	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	395, 473
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	211, 358
Psp6I	CCWGG	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	6, 103, 190
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	2 cut(s)	4, 260
PvuII	CAGCTG	2 cut(s)	11, 244
SapI	GCTCTTC	1 cut(s)	159
SatI	GCNGC	2 cut(s)	210, 357
Sau3AI	GATC	2 cut(s)	4, 260
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	3 cut(s)	213, 325, 357
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	453
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	395, 473
TscAI	CASTG	2 cut(s)	79, 180
TseI	GCWGC	2 cut(s)	209, 356
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	2 cut(s)	33, 114
TspRI	CASTG	2 cut(s)	79, 180
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.