Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009288

Physical Location & Seq

Genomic Coordinates Forward (+)

15600562 .. 15601134

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0181800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACCGAGCTACTATGCAACCCGGAGACGCTAATCAAGGCCAAAACAGAACTCAATCATGTGATCGGTCTAAACAGAAAGATCGACGAGTCTGACATTGACAATCTTCCATACTTGCAAGGCATAGTTAAAGAAACACTGAGATTACATCCACCCGTCCCATTCCTCATACCAAGGAAAGCTATGCAAGACACCAAATTCATGGGTTACTTCATACCCAAAAATACACAGGTATTTGTTAATGCTTATGCAATTGGAAGAGACCCAGATGTTTGGATTGATGAGCCTAATTCGTTTAAGCCCGAGAGGTTCATAGGCTCAAAAGTGGATTATAAGGGTCAGCATTATGAGTTGATCCCATTTGGAGCCGGGAGAAGAATGTGTGCTGGTGTGCCGTTGGGTGATAGGATGCTGCACCTTACTTTGGGGTCATTGCTTCACCAATTTGATTGGGCACTTGATGGAAATGTTACTAAGGAAACTATGGATTGGAATGATAGGTTAGGCATAACAATGAGAAAGTATCAGCCATTAGTAGCTGTGCCTACAAAGTGCTTGGCTAGTTCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019866 GO:0019867 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046983 GO:0051179 GO:0051641 GO:0070469 GO:0070727 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

190

Amino Acids

21.64

Weight (kDa)

7.73

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 175	2e-55	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42210 AT2G42210 AT2G42210 AT2G42210 AT2G42210
fragaria_vesca	FvH4_6g22680
malus_domestica	MD12G1061000.v1.1 MD14G1060700.v1.1
prunus_persica	Prupe.7G073800_v2.0.a1 Prupe.7G073800_v2.0.a1
pyrus_communis	pycom12g05390 pycom14g04920
rosa_chinensis	RchiOBHm_Chr3g0480261
rosa_laevigata	RLG00000023507
rosa_multiflora	Rmu_sc0000311.1_g000002
rosa_roxburghii	Rroxscaffold_6G00401670
rosa_rugosa	Rorug03G0181800
rosa_samantha	Rh3AG233200 Rh3BG265900 Rh3CG263400 Rh3DG259000
rosa_wichuraiana	Rw3G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	424
AluBI	AGCT	3 cut(s)	10, 182, 539
AluI	AGCT	3 cut(s)	10, 182, 539
Alw26I	GTCTC	2 cut(s)	20, 255
AlwI	GGATC	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	23, 370
AsuHPI	GGTGA	2 cut(s)	413, 431
AvaI	CYCGRG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	23, 370
BcoDI	GTCTC	2 cut(s)	20, 255
BfaI	CTAG	1 cut(s)	561
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
Bme1390I	CCNGG	2 cut(s)	23, 370
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	2 cut(s)	23, 370
BmsI	GCATC	1 cut(s)	399
BpuMI	CCSGG	2 cut(s)	23, 370
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	148, 414
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	398
BshFI	GGCC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	23, 369
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	20, 255
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	63, 81, 354
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	63, 81, 354
BssT1I	CCWWGG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	140, 474
BstF5I	GGATG	2 cut(s)	148, 414
BstKTI	GATC	3 cut(s)	66, 84, 357
BstMAI	GTCTC	2 cut(s)	20, 255
BstMBI	GATC	3 cut(s)	63, 81, 354
BstSCI	CCNGG	2 cut(s)	21, 368
BstSLI	GKGCMC	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	399
BstXI	CCANNNNNNTGG	2 cut(s)	202, 273
BsuRI	GGCC	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	148, 414
BtsIMutI	CAGTG	1 cut(s)	137
CseI	GACGC	1 cut(s)	37
CviAII	CATG	2 cut(s)	59, 202
DdeI	CTNAG	2 cut(s)	140, 474
DpnI	GATC	3 cut(s)	65, 83, 356
DpnII	GATC	3 cut(s)	63, 81, 354
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	62, 205
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	58, 201
Fnu4HI	GCNGC	1 cut(s)	413
FokI	GGATG	2 cut(s)	135, 421
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	23, 369
HgaI	GACGC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	62, 205
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	23, 369
HphI	GGTGA	2 cut(s)	413, 431
Hpy188I	TCNGA	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4V	TGCA	5 cut(s)	18, 118, 187, 251, 415
HpyF3I	CTNAG	2 cut(s)	140, 474
Hsp92II	CATG	2 cut(s)	62, 205
Kzo9I	GATC	3 cut(s)	63, 81, 354
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	5 cut(s)	36, 215, 279, 372, 382
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	206, 469
MalI	GATC	3 cut(s)	65, 83, 356
MboI	GATC	3 cut(s)	63, 81, 354
MboII	GAAGA	3 cut(s)	98, 270, 387
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	4 cut(s)	197, 252, 289, 443
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	2 cut(s)	176, 300
MseI	TTAA	3 cut(s)	129, 240, 297
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	2 cut(s)	23, 369
MspR9I	CCNGG	2 cut(s)	23, 370
MunI	CAATTG	1 cut(s)	252
NciI	CCSGG	2 cut(s)	23, 370
NdeII	GATC	3 cut(s)	63, 81, 354
NlaIII	CATG	2 cut(s)	62, 205
NlaIV	GGNNCC	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	414
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PsiI	TTATAA	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	3 cut(s)	129, 240, 297
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	3 cut(s)	63, 81, 354
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	23, 370
SduI	GDGCHC	1 cut(s)	457
SetI	ASST	7 cut(s)	12, 184, 234, 311, 420, 503, 541
SfaNI	GCATC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	197, 252, 289, 443
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	21, 368
StyI	CCWWGG	1 cut(s)	173
TaqI	TCGA	1 cut(s)	84
TaqII	GACCGA	2 cut(s)	20, 56
TasI	AATT	4 cut(s)	197, 252, 289, 443
Tru1I	TTAA	3 cut(s)	129, 240, 297
Tru9I	TTAA	3 cut(s)	129, 240, 297
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	412
TspDTI	ATGAA	4 cut(s)	190, 202, 301, 555
TspRI	CASTG	1 cut(s)	144
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.