Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009288

Physical Location & Seq

Genomic Coordinates Forward (+)

7085460 .. 7088064

Gene Structure 2605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1061000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGACTCCTTGGACCCGGCAGAGCGTAGGTATTTGGAGGATGAGGATACTCCTCTGATGAAGACACTTAAGGGTGCGACAAATGGATTTGTAACTGGAACTATCTTTGGGACCATAGTTGCTACTTGGTATGATGTGCCTCGTGTTGAGAGAAATGTCGCTCTTCCTGGGCTGATAAGGACCCTGAGGATGATGGGAAACTACGGGGTTACATTTGCTGCAATTGGGGGAGTGTACATTGGCGTTGAACAGCTTGTGCAAAATTATCGGATGAAGAGAGACTTTATCAATGGAGCTGTCGGTGGTTTTGTTGCTGGGTCTACTATTCTAGGTTACAGAGGAAAGAGCATTTCAACTGCAATTTCTGCTGGAGCAGCCCTGGCAGTCACTTCGTCGCTCATTGATGCTGGGGGCCAGACCACGAGAATTGATAATGGCAAGGAGTACTATCCTTACACCACCAAGAAAAGATCCACATCCGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019866 GO:0019867 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046983 GO:0051179 GO:0051641 GO:0070469 GO:0070727 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

163

Amino Acids

17.45

Weight (kDa)

9.15

Isoelectric Point (pI)

19.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	19 - 131	2.3e-16	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42210 AT2G42210 AT2G42210 AT2G42210 AT2G42210
fragaria_vesca	FvH4_6g22680
malus_domestica	MD12G1061000.v1.1 MD14G1060700.v1.1
prunus_persica	Prupe.7G073800_v2.0.a1 Prupe.7G073800_v2.0.a1
pyrus_communis	pycom12g05390 pycom14g04920
rosa_chinensis	RchiOBHm_Chr3g0480261
rosa_laevigata	RLG00000023507
rosa_multiflora	Rmu_sc0000311.1_g000002
rosa_roxburghii	Rroxscaffold_6G00401670
rosa_rugosa	Rorug03G0181800
rosa_samantha	Rh3AG233200 Rh3BG265900 Rh3CG263400 Rh3DG259000
rosa_wichuraiana	Rw3G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	465
AfaI	GTAC	2 cut(s)	236, 446
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	248, 354
AjnI	CCWGG	2 cut(s)	166, 378
AluBI	AGCT	2 cut(s)	253, 296
AluI	AGCT	2 cut(s)	253, 296
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	218, 374
AspS9I	GGNCC	4 cut(s)	13, 111, 180, 412
AsuC2I	CCSGG	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	13, 111, 180
AxyI	CCTNAGG	1 cut(s)	185
BauI	CACGAG	2 cut(s)	141, 421
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	205, 386
BccI	CCATC	1 cut(s)	187
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 372, 406
BciT130I	CCWGG	2 cut(s)	168, 380
BciVI	GTATCC	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	219, 375
BlsI	GCNGC	2 cut(s)	220, 376
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	17, 168, 380
Bme18I	GGWCC	3 cut(s)	13, 111, 180
BmgT120I	GGNCC	4 cut(s)	13, 111, 180, 412
BmiI	GGNNCC	4 cut(s)	15, 112, 182, 413
BmrFI	CCNGG	3 cut(s)	17, 168, 380
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	9, 167, 378
Bse1I	ACTGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	168, 380
BseDI	CCNNGG	3 cut(s)	9, 167, 378
BseGI	GGATG	4 cut(s)	46, 195, 276, 476
BseJI	GATNNNNATC	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	205, 386
BseYI	CCCAGC	2 cut(s)	314, 407
BshFI	GGCC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	470
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	15, 112, 182, 413
BspPI	GGATC	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	9, 167, 378
BssMI	GATC	1 cut(s)	470
BssSI	CACGAG	2 cut(s)	141, 421
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	2 cut(s)	141, 421
Bst2UI	CCWGG	2 cut(s)	168, 380
Bst6I	CTCTTC	2 cut(s)	168, 269
BstAFI	CTTAAG	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	4 cut(s)	46, 195, 276, 476
BstKTI	GATC	1 cut(s)	473
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	470
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 374, 380
BstNI	CCWGG	2 cut(s)	168, 380
BstSCI	CCNGG	3 cut(s)	15, 166, 378
BstV1I	GCAGC	2 cut(s)	205, 386
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
Bsu36I	CCTNAGG	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	46, 195, 276, 476
Cfr13I	GGNCC	4 cut(s)	13, 111, 180, 412
Csp6I	GTAC	2 cut(s)	235, 445
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviJI	RGCY	5 cut(s)	172, 253, 296, 377, 414
CviKI_1	RGCY	5 cut(s)	172, 253, 296, 377, 414
CviQI	GTAC	2 cut(s)	235, 445
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	472
DpnII	GATC	1 cut(s)	470
Eam1104I	CTCTTC	2 cut(s)	168, 269
EarI	CTCTTC	2 cut(s)	168, 269
Eco130I	CCWWGG	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	13, 111, 180
Eco81I	CCTNAGG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	166, 378
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaiI	YATR	3 cut(s)	116, 132, 487
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	219, 375
FokI	GGATG	4 cut(s)	53, 202, 283, 463
Fsp4HI	GCNGC	2 cut(s)	219, 375
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	2 cut(s)	219, 375
GsaI	CCCAGC	2 cut(s)	318, 411
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	1 cut(s)	17
HinfI	GANTC	2 cut(s)	5, 482
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	235, 321
Hpy188I	TCNGA	3 cut(s)	57, 270, 481
Hpy8I	GTNNAC	2 cut(s)	235, 321
Hpy99I	CGWCG	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	221, 259, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 374, 380
HpyF3I	CTNAG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	470
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	293, 371
Lsp1109I	GCAGC	2 cut(s)	205, 386
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	4 cut(s)	91, 208, 332, 385
MalI	GATC	1 cut(s)	472
MboI	GATC	1 cut(s)	470
MboII	GAAGA	3 cut(s)	73, 155, 286
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	4 cut(s)	222, 262, 360, 426
MnlI	CCTC	6 cut(s)	31, 37, 63, 150, 180, 332
MseI	TTAA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	3 cut(s)	17, 168, 380
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	2 cut(s)	168, 380
MwoI	GCNNNNNNNGC	3 cut(s)	365, 374, 380
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	470
NlaIV	GGNNCC	4 cut(s)	15, 112, 182, 413
NmuCI	GTSAC	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	220, 376
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	2 cut(s)	166, 378
PspFI	CCCAGC	2 cut(s)	314, 407
PspGI	CCWGG	2 cut(s)	166, 378
PspN4I	GGNNCC	4 cut(s)	15, 112, 182, 413
PspPI	GGNCC	4 cut(s)	13, 111, 180, 412
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	236, 446
RsaNI	GTAC	2 cut(s)	235, 445
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	219, 375
Sau3AI	GATC	1 cut(s)	470
Sau96I	GGNCC	4 cut(s)	13, 111, 180, 412
ScaI	AGTACT	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	17, 168, 380
SetI	ASST	4 cut(s)	32, 255, 298, 334
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	3 cut(s)	13, 111, 180
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	4 cut(s)	222, 262, 360, 426
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	3 cut(s)	15, 166, 378
StyI	CCWWGG	1 cut(s)	9
TasI	AATT	4 cut(s)	222, 262, 360, 426
TatI	WGTACW	2 cut(s)	234, 444
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	218, 374
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	74, 287, 474
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	3 cut(s)	13, 111, 180
XmiI	GTMKAC	1 cut(s)	320
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.