Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009288

Physical Location & Seq

Genomic Coordinates Reverse (-)

24713403 .. 24716423

Gene Structure 3021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCCCAATTTGAAAAGGGTGTAGTACCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCTCGAAGTTTCGGTCGGTACATATATAGGAAACAGTCATGGATGGGTTGGACCCCGCAGAGCGTAGGAACTATTTTTGGGACCATAGTTGCTACCTGGTATGATGTGCCTCGTGTTGAGAGAAGTGTAGCTCTTCCAGGGCTGATAAGGACCCTGAAGATGATGGGAAACTATGGGATGACATTTGCTGCAATTGGAGGAGTTTACATCGGTGTGGAGCAGCTTGTGCAGCATTATAGGTCAAAGAGAGACTTTGTCAATGGAGCTGTCGGTGGTTTTGTTGCTGGATCAACTATTCTAGGTTACAAAGGAAGGAGCATTCCAACTGCAATTTCTGCTGGAGCAGCCTTGGCAGTCACTTCTGCACTCATTGATGCTGGGGGCCAGACCACAAGAATTGATAACGGCAAGGAGTACTATCCTTATACCACCAAAAAAAGATCTACTGCTGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019866 GO:0019867 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046983 GO:0051179 GO:0051641 GO:0070469 GO:0070727 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

176

Amino Acids

18.85

Weight (kDa)

9.99

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	45 - 144	2.6e-15	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42210 AT2G42210 AT2G42210 AT2G42210 AT2G42210
fragaria_vesca	FvH4_6g22680
malus_domestica	MD12G1061000.v1.1 MD14G1060700.v1.1
prunus_persica	Prupe.7G073800_v2.0.a1 Prupe.7G073800_v2.0.a1
pyrus_communis	pycom12g05390 pycom14g04920
rosa_chinensis	RchiOBHm_Chr3g0480261
rosa_laevigata	RLG00000023507
rosa_multiflora	Rmu_sc0000311.1_g000002
rosa_roxburghii	Rroxscaffold_6G00401670
rosa_rugosa	Rorug03G0181800
rosa_samantha	Rh3AG233200 Rh3BG265900 Rh3CG263400 Rh3DG259000
rosa_wichuraiana	Rw3G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	68, 125
AclWI	GGATC	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	3 cut(s)	27, 89, 485
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	164, 205
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	4 cut(s)	33, 200, 292, 335
AluI	AGCT	4 cut(s)	33, 200, 292, 335
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	2 cut(s)	3, 451
ApeKI	GCWGC	4 cut(s)	257, 289, 298, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
AspS9I	GGNCC	5 cut(s)	4, 120, 150, 219, 451
AvaII	GGWCC	3 cut(s)	120, 150, 219
BauI	CACGAG	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	244, 301, 310, 425
BccI	CCATC	2 cut(s)	106, 226
BceAI	ACGGC	1 cut(s)	490
BciT130I	CCWGG	2 cut(s)	166, 207
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	30, 368
BglII	AGATCT	1 cut(s)	509
BisI	GCNGC	4 cut(s)	258, 290, 299, 414
BlsI	GCNGC	4 cut(s)	259, 291, 300, 415
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	166, 207
Bme18I	GGWCC	3 cut(s)	120, 150, 219
BmgT120I	GGNCC	5 cut(s)	4, 120, 150, 219, 451
BmiI	GGNNCC	4 cut(s)	122, 151, 221, 452
BmrFI	CCNGG	2 cut(s)	166, 207
BmsI	GCATC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	206, 417
BseBI	CCWGG	2 cut(s)	166, 207
BseDI	CCNNGG	2 cut(s)	206, 417
BseGI	GGATG	2 cut(s)	117, 252
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	4 cut(s)	244, 301, 310, 425
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	2 cut(s)	317, 417
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	5, 453
BsiEI	CGRYCG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	5, 453
Bsp143I	GATC	2 cut(s)	356, 509
BspACI	CCGC	2 cut(s)	68, 125
BspANI	GGCC	2 cut(s)	5, 453
BspLI	GGNNCC	4 cut(s)	122, 151, 221, 452
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	206, 417
BssMI	GATC	2 cut(s)	356, 509
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	166, 207
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	1 cut(s)	207
BstAPI	GCANNNNNTGC	2 cut(s)	295, 404
BstF5I	GGATG	2 cut(s)	117, 252
BstKTI	GATC	2 cut(s)	359, 512
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	2 cut(s)	356, 509
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	5 cut(s)	295, 298, 404, 413, 419
BstNI	CCWGG	2 cut(s)	166, 207
BstSCI	CCNGG	2 cut(s)	164, 205
BstV1I	GCAGC	4 cut(s)	244, 301, 310, 425
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuRI	GGCC	2 cut(s)	5, 453
BtsCI	GGATG	2 cut(s)	117, 252
Cfr13I	GGNCC	5 cut(s)	4, 120, 150, 219, 451
CsiI	ACCWGGT	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	26, 88, 484
CspCI	CAANNNNNGTGG	2 cut(s)	448, 483
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	8 cut(s)	5, 33, 200, 211, 292, 335, 416, 453
CviKI_1	RGCY	8 cut(s)	5, 33, 200, 211, 292, 335, 416, 453
CviQI	GTAC	3 cut(s)	26, 88, 484
DpnI	GATC	2 cut(s)	358, 511
DpnII	GATC	2 cut(s)	356, 509
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	120, 150, 219
Eco57I	CTGAAG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	164, 205
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	111
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	107
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	258, 290, 299, 414
FokI	GGATG	2 cut(s)	124, 259
Fsp4HI	GCNGC	4 cut(s)	258, 290, 299, 414
FspBI	CTAG	2 cut(s)	30, 368
GluI	GCNGC	4 cut(s)	258, 290, 299, 414
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	5, 453
Hin1II	CATG	1 cut(s)	111
HinfI	GANTC	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	260, 298, 398, 434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	295, 298, 404, 413, 419
Hsp92II	CATG	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	356, 509
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	286, 332, 384, 410
LpnPI	CCDG	9 cut(s)	151, 178, 192, 219, 236, 339, 393, 432, 467
Lsp1109I	GCAGC	4 cut(s)	244, 301, 310, 425
LweI	GCATC	1 cut(s)	433
MabI	ACCWGGT	1 cut(s)	164
MaeI	CTAG	2 cut(s)	30, 368
MaeIII	GTNAC	2 cut(s)	371, 424
MalI	GATC	2 cut(s)	358, 511
MboI	GATC	2 cut(s)	356, 509
MboII	GAAGA	2 cut(s)	194, 238
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	4 cut(s)	8, 261, 399, 465
MmeI	TCCRAC	2 cut(s)	98, 416
MnlI	CCTC	3 cut(s)	81, 189, 260
MslI	CAYNNNNRTG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	166, 207
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	166, 207
MwoI	GCNNNNNNNGC	5 cut(s)	295, 298, 404, 413, 419
NdeII	GATC	2 cut(s)	356, 509
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	4 cut(s)	122, 151, 221, 452
NmuCI	GTSAC	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	521
PflFI	GACNNNGTC	1 cut(s)	323
PkrI	GCNGC	4 cut(s)	259, 291, 300, 415
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	164, 205
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	164, 205
PspN4I	GGNNCC	4 cut(s)	122, 151, 221, 452
PspPI	GGNCC	5 cut(s)	4, 120, 150, 219, 451
PspPPI	RGGWCCY	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	509
PsyI	GACNNNGTC	1 cut(s)	323
RsaI	GTAC	3 cut(s)	27, 89, 485
RsaNI	GTAC	3 cut(s)	26, 88, 484
RseI	CAYNNNNRTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	207
SatI	GCNGC	4 cut(s)	258, 290, 299, 414
Sau3AI	GATC	2 cut(s)	356, 509
Sau96I	GGNCC	5 cut(s)	4, 120, 150, 219, 451
ScaI	AGTACT	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	166, 207
SetI	ASST	8 cut(s)	31, 35, 167, 202, 294, 311, 337, 373
SexAI	ACCWGGT	1 cut(s)	164
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	3 cut(s)	120, 150, 219
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	8, 261, 399, 465
SsiI	CCGC	2 cut(s)	68, 125
SspMI	CTAG	2 cut(s)	30, 368
StyD4I	CCNGG	2 cut(s)	164, 205
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	73
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	4 cut(s)	8, 261, 399, 465
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	521
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	257, 289, 298, 413
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	513
Tth111I	GACNNNGTC	1 cut(s)	323
VpaK11BI	GGWCC	3 cut(s)	120, 150, 219
XspI	CTAG	2 cut(s)	30, 368
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.