Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009288

Physical Location & Seq

Genomic Coordinates Reverse (-)

11130808 .. 11134407

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G073800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGACTCCTTGGACCCCGCGGAGCGCAGGTATTTGGAGGATGAGGATAGTCCTACCATGAAGACAATTAAGGGTGCAACAAATGGATTTGTTACTGGAACTATTTTTGGGACCATAGTTGCTACTTGGTATGATGTGCCTCGTGTTGAGAGAAGTGTCGCTCTTCCAGGGCTGATAAGGACCCTTAAGATGATGGGAAACTACGGGATCACATTTGCTGCAATTGGGGGAGTGTACATTGGTGTTGAGCAGATCGTGCAGAATTACAGGATGAAGAGAGACTTCATCAATGGAGCTGTTGGTGGTTTTGTTGCTGGGTCGACTATTCTTGGTTACAAAGGAAAGAGCATTTCAACTGCGATTTCTGCGGGGGCAGCCTTAGCGGTCACTTCTTCACTCATTGATGCTGGAGGCCAGACAACAAGAATCGATAACGGCAAGGAGTACTATCCTTACACCACCAAGAAAAGATCCACTGCCGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019866 GO:0019867 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046983 GO:0051179 GO:0051641 GO:0070469 GO:0070727 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

163

Amino Acids

17.34

Weight (kDa)

9.1

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42210 AT2G42210 AT2G42210 AT2G42210 AT2G42210
fragaria_vesca	FvH4_6g22680
malus_domestica	MD12G1061000.v1.1 MD14G1060700.v1.1
prunus_persica	Prupe.7G073800_v2.0.a1 Prupe.7G073800_v2.0.a1
pyrus_communis	pycom12g05390 pycom14g04920
rosa_chinensis	RchiOBHm_Chr3g0480261
rosa_laevigata	RLG00000023507
rosa_multiflora	Rmu_sc0000311.1_g000002
rosa_roxburghii	Rroxscaffold_6G00401670
rosa_rugosa	Rorug03G0181800
rosa_samantha	Rh3AG233200 Rh3BG265900 Rh3CG263400 Rh3DG259000
rosa_wichuraiana	Rw3G020980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	320
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	18, 20, 368, 383
AclWI	GGATC	2 cut(s)	215, 465
AfaI	GTAC	2 cut(s)	236, 446
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	215, 465
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	218, 374
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	3 cut(s)	13, 111, 180
AvaII	GGWCC	3 cut(s)	13, 111, 180
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	205, 386
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	219, 375
BlsI	GCNGC	2 cut(s)	220, 376
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	3 cut(s)	13, 111, 180
BmgT120I	GGNCC	3 cut(s)	13, 111, 180
BmiI	GGNNCC	3 cut(s)	15, 112, 182
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	9, 18, 167
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	9, 18, 167
BseGI	GGATG	2 cut(s)	46, 276
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	205, 386
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	414
BshVI	ATCGAT	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	207, 252, 470
BspACI	CCGC	4 cut(s)	18, 20, 368, 383
BspANI	GGCC	1 cut(s)	414
BspDI	ATCGAT	1 cut(s)	429
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	3 cut(s)	15, 112, 182
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	215, 465
BspQI	GCTCTTC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	9, 18, 167
BssMI	GATC	3 cut(s)	207, 252, 470
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	168, 269
BstAFI	CTTAAG	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	379
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	46, 276
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	210, 255, 473
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	207, 252, 470
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 365, 374, 380
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	205, 386
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	46, 276
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	3 cut(s)	13, 111, 180
Cfr42I	CCGCGG	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	235, 445
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	4 cut(s)	172, 296, 377, 414
CviKI_1	RGCY	4 cut(s)	172, 296, 377, 414
CviQI	GTAC	2 cut(s)	235, 445
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	3 cut(s)	209, 254, 472
DpnII	GATC	3 cut(s)	207, 252, 470
Eam1104I	CTCTTC	2 cut(s)	168, 269
EarI	CTCTTC	2 cut(s)	168, 269
Eco130I	CCWWGG	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	13, 111, 180
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 116, 132
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	57
FauI	CCCGC	2 cut(s)	25, 361
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	219, 375
FokI	GGATG	2 cut(s)	53, 283
Fsp4HI	GCNGC	2 cut(s)	219, 375
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	219, 375
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	5, 426, 482
Hpy166II	GTNNAC	2 cut(s)	235, 321
Hpy8I	GTNNAC	2 cut(s)	235, 321
HpyCH4V	TGCA	3 cut(s)	77, 221, 259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 365, 374, 380
HpyF3I	CTNAG	1 cut(s)	379
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	25
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	207, 252, 470
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	22, 293
LpnPI	CCDG	8 cut(s)	13, 81, 153, 180, 253, 300, 393, 428
Lsp1109I	GCAGC	2 cut(s)	205, 386
LweI	GCATC	1 cut(s)	394
MaeIII	GTNAC	3 cut(s)	91, 332, 385
MalI	GATC	3 cut(s)	209, 254, 472
MboI	GATC	3 cut(s)	207, 252, 470
MboII	GAAGA	4 cut(s)	73, 155, 286, 384
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	470
MluCI	AATT	3 cut(s)	66, 222, 262
MnlI	CCTC	4 cut(s)	31, 37, 150, 404
MseI	TTAA	2 cut(s)	69, 186
MspA1I	CMGCKG	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	4 cut(s)	256, 365, 374, 380
NdeII	GATC	3 cut(s)	207, 252, 470
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	15, 112, 182
NmuCI	GTSAC	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	426, 482
PkrI	GCNGC	2 cut(s)	220, 376
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	3 cut(s)	15, 112, 182
PspPI	GGNCC	3 cut(s)	13, 111, 180
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	236, 446
RsaNI	GTAC	2 cut(s)	235, 445
SacII	CCGCGG	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	69, 186
SatI	GCNGC	2 cut(s)	219, 375
Sau3AI	GATC	3 cut(s)	207, 252, 470
Sau96I	GGNCC	3 cut(s)	13, 111, 180
ScaI	AGTACT	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	2 cut(s)	32, 298
SfaNI	GCATC	1 cut(s)	394
Sfr303I	CCGCGG	1 cut(s)	21
SgrBI	CCGCGG	1 cut(s)	21
SinI	GGWCC	3 cut(s)	13, 111, 180
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	66, 222, 262
SsiI	CCGC	4 cut(s)	18, 20, 368, 383
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	2 cut(s)	320, 429
TasI	AATT	3 cut(s)	66, 222, 262
TatI	WGTACW	2 cut(s)	234, 444
TfiI	GAWTC	2 cut(s)	426, 482
Tru1I	TTAA	2 cut(s)	69, 186
Tru9I	TTAA	2 cut(s)	69, 186
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	218, 374
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	74, 274, 287
TspRI	CASTG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	3 cut(s)	13, 111, 180
XmiI	GTMKAC	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.