Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010773

Physical Location & Seq

Genomic Coordinates Forward (+)

18149197 .. 18151295

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGTGGAGTTGGAGAGAAAGCTTCTGGAACAACTAAGACACCTGCTGATTTCTTGAAATCTATCCGTGGTAAACCAGTTGTTGTCAAGCTCAACTCTGGTGTTGATTATCGAGGCATTCTTACTTGTCTTGATGGATATATGAACATCGCAATGGAGCAAACCGAAGAGTATGTAAATGGCCAGCTGAAGAACACATATGGCGACGCTTTTGTCCGTGGCAACAATGTTCTTTACATCAGCACAACAAAGGGGACATTGTCAGATGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0022613 GO:0030490 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

91

Amino Acids

9.73

Weight (kDa)

7.81

Isoelectric Point (pI)

15.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	17 - 81	9.6e-20	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43810 AT2G43810 AT2G43810 AT3G59810 AT3G59810 AT3G59810
fragaria_vesca	FvH4_1g00440
malus_domestica	MD02G1003600.v1.1 MD15G1146900.v1.1
prunus_persica	Prupe.7G267700_v2.0.a1
pyrus_communis	pycom15g13170
rosa_chinensis	RchiOBHm_Chr2g0084951 RchiOBHm_Chr7g0189461
rosa_multiflora	Rmu_sc0008647.1_g000026
rosa_rugosa	Rorug01G0457100 Rorug01G0457200 Rorug01G0457300
rosa_samantha	Rh2CG006600 Rh2DG006400
rosa_wichuraiana	Rw2G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	52
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	3 cut(s)	23, 91, 187
AluI	AGCT	3 cut(s)	23, 91, 187
AoxI	GGCC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	183
BccI	CCATC	2 cut(s)	128, 260
BfuAI	ACCTGC	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	67, 217
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	67, 217
BseMI	GCAATG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	67, 217
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	2 cut(s)	67, 217
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	2 cut(s)	67, 217
BtgZI	GCGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	185
CseI	GACGC	1 cut(s)	215
CviJI	RGCY	4 cut(s)	23, 91, 183, 187
CviKI_1	RGCY	4 cut(s)	23, 91, 183, 187
DdeI	CTNAG	1 cut(s)	36
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	209
FaiI	YATR	6 cut(s)	141, 143, 174, 199, 201, 274
FaqI	GGGAC	1 cut(s)	268
FauNDI	CATATG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	183
HgaI	GACGC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	3 cut(s)	27, 55, 131
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	209
HpyF3I	CTNAG	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	157, 269
LpnPI	CCDG	5 cut(s)	12, 57, 84, 90, 197
MboII	GAAGA	2 cut(s)	179, 202
MlsI	TGGCCA	1 cut(s)	183
MluNI	TGGCCA	1 cut(s)	183
MnlI	CCTC	1 cut(s)	107
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	117
NdeI	CATATG	1 cut(s)	199
PaqCI	CACCTGC	1 cut(s)	52
PctI	GAATGC	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	259
PsyI	GACNNNGTC	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	152
SetI	ASST	4 cut(s)	25, 46, 93, 189
SmiMI	CAYNNNNRTG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	56, 206
Tth111I	GACNNNGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.