Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010773

Physical Location & Seq

Genomic Coordinates Reverse (-)

8747966 .. 8752239

Gene Structure 4274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGCGGAGCAGGAGCAGAGAGAGGATCTGGAACCACAAAAACTCCTGCAGATTTTCTTAAATCAATTCGGGGGCGACCGGTTGTTGTTAAACTGAATTCTGGTGTTGACTATCGAGGTTGTGTTTCTCCTATAAGAAATAGAAATGACAAAATAATGGCAGTACTCAGAAACTTTTGCGCAGCTCTGATGCCGCAAGCATGGATTGCCCATTTTGATGTCTGCATTTCGTTTGGATCCGGAAACTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0022613 GO:0030490 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

84

Amino Acids

9.09

Weight (kDa)

9.92

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43810 AT2G43810 AT2G43810 AT3G59810 AT3G59810 AT3G59810
fragaria_vesca	FvH4_1g00440
malus_domestica	MD02G1003600.v1.1 MD15G1146900.v1.1
prunus_persica	Prupe.7G267700_v2.0.a1
pyrus_communis	pycom15g13170
rosa_chinensis	RchiOBHm_Chr2g0084951 RchiOBHm_Chr7g0189461
rosa_multiflora	Rmu_sc0008647.1_g000026
rosa_rugosa	Rorug01G0457100 Rorug01G0457200 Rorug01G0457300
rosa_samantha	Rh2CG006600 Rh2DG006400
rosa_wichuraiana	Rw2G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	6
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	2 cut(s)	6, 194
AclWI	GGATC	3 cut(s)	34, 231, 244
AcsI	RAATTY	1 cut(s)	97
AfaI	GTAC	1 cut(s)	165
AgeI	ACCGGT	1 cut(s)	79
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
AlwI	GGATC	3 cut(s)	34, 231, 244
Aor13HI	TCCGGA	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	97
AsiGI	ACCGGT	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	2 cut(s)	183, 194
BlsI	GCNGC	2 cut(s)	184, 195
BmcAI	AGTACT	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	34, 238
BmsI	GCATC	1 cut(s)	180
BsaWI	WCCGGW	2 cut(s)	79, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bse118I	RCCGGY	1 cut(s)	79
BseAI	TCCGGA	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	80
BshTI	ACCGGT	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	80, 240
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	26, 236
BspACI	CCGC	2 cut(s)	6, 194
BspCNI	CTCAG	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	34, 238
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	3 cut(s)	34, 231, 244
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssMI	GATC	2 cut(s)	26, 236
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	29, 239
BstMBI	GATC	2 cut(s)	26, 236
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	26, 236
BstYI	RGATCY	2 cut(s)	26, 236
Cac8I	GCNNGC	1 cut(s)	198
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	164
CspAI	ACCGGT	1 cut(s)	79
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	1 cut(s)	185
CviKI_1	RGCY	1 cut(s)	185
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	28, 238
DpnII	GATC	2 cut(s)	26, 236
EcoRI	GAATTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	204
FaiI	YATR	2 cut(s)	134, 202
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	183, 194
Fsp4HI	GCNGC	2 cut(s)	183, 194
FspI	TGCGCA	1 cut(s)	181
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	183, 194
HapII	CCGG	2 cut(s)	80, 240
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HpaII	CCGG	2 cut(s)	80, 240
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	170, 189
Hpy188III	TCNNGA	2 cut(s)	30, 240
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	50, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	204
HspAI	GCGC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	26, 236
LmnI	GCTCC	2 cut(s)	8, 14
LpnPI	CCDG	4 cut(s)	15, 60, 87, 93
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	180
MalI	GATC	2 cut(s)	28, 238
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	26, 236
MflI	RGATCY	2 cut(s)	26, 236
MluCI	AATT	2 cut(s)	66, 97
MnlI	CCTC	2 cut(s)	17, 110
MroI	TCCGGA	1 cut(s)	239
MseI	TTAA	2 cut(s)	60, 90
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	2 cut(s)	80, 240
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	2 cut(s)	26, 236
NlaIII	CATG	1 cut(s)	204
NlaIV	GGNNCC	2 cut(s)	34, 238
NsbI	TGCGCA	1 cut(s)	181
PinAI	ACCGGT	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	184, 195
PspN4I	GGNNCC	2 cut(s)	34, 238
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	2 cut(s)	26, 236
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	60, 90
SatI	GCNGC	2 cut(s)	183, 194
Sau3AI	GATC	2 cut(s)	26, 236
ScaI	AGTACT	1 cut(s)	165
SetI	ASST	2 cut(s)	121, 187
SfaNI	GCATC	1 cut(s)	180
SfcI	CTRYAG	1 cut(s)	48
SgeI	CNNG	9 cut(s)	24, 42, 59, 83, 92, 114, 128, 209, 213
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	66, 97
SsiI	CCGC	2 cut(s)	6, 194
TaqI	TCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	66, 97
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	60, 90
Tru9I	TTAA	2 cut(s)	60, 90
TseI	GCWGC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.