Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010773

Physical Location & Seq

Genomic Coordinates Reverse (-)

259137 .. 261258

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1003600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGTGGAGGTGGAGAGAAAGGGACAGGAACCACAAAAACTCCGGCAGATTTCCTCAAGTCAATTCGTGGGCGACCGGTTGTTGTAAAACTGAATTCTGGTGTTGACTATCGAGGTATTCTTGCGTGTCTTGATGGGTATATGAATATAGCAATGGAACAAACCGAAGAATATGTCAATGGACAGTTAAAAAATAAGTATGGTGATGCTTTTATTCGCGGAAATAATGTTCTATACATTAGCACGACGAAGAGGAATGTGGCGGATGGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0022613 GO:0030490 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

92

Amino Acids

9.81

Weight (kDa)

9.13

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	17 - 81	6.9e-20	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43810 AT2G43810 AT2G43810 AT3G59810 AT3G59810 AT3G59810
fragaria_vesca	FvH4_1g00440
malus_domestica	MD02G1003600.v1.1 MD15G1146900.v1.1
prunus_persica	Prupe.7G267700_v2.0.a1
pyrus_communis	pycom15g13170
rosa_chinensis	RchiOBHm_Chr2g0084951 RchiOBHm_Chr7g0189461
rosa_multiflora	Rmu_sc0008647.1_g000026
rosa_rugosa	Rorug01G0457100 Rorug01G0457200 Rorug01G0457300
rosa_samantha	Rh2CG006600 Rh2DG006400
rosa_wichuraiana	Rw2G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	219
AciI	CCGC	2 cut(s)	219, 263
AcsI	RAATTY	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	76
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AsiGI	ACCGGT	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	215
BccI	CCATC	2 cut(s)	128, 260
BmiI	GGNNCC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse118I	RCCGGY	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	44, 77
BslFI	GGGAC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	37
BspACI	CCGC	2 cut(s)	219, 263
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	219
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	76
CspAI	ACCGGT	1 cut(s)	76
CviJI	RGCY	1 cut(s)	272
CviKI_1	RGCY	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	94
FaiI	YATR	6 cut(s)	141, 143, 149, 174, 201, 235
FaqI	GGGAC	1 cut(s)	37
HapII	CCGG	2 cut(s)	44, 77
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HpaII	CCGG	2 cut(s)	44, 77
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	273
LpnPI	CCDG	4 cut(s)	12, 57, 84, 90
LweI	GCATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	179, 262
MluCI	AATT	2 cut(s)	63, 94
MnlI	CCTC	3 cut(s)	65, 107, 246
MseI	TTAA	1 cut(s)	188
MspI	CCGG	2 cut(s)	44, 77
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	31
PinAI	ACCGGT	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	188
SetI	ASST	2 cut(s)	13, 118
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	63, 94
SsiI	CCGC	2 cut(s)	219, 263
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	112
TasI	AATT	2 cut(s)	63, 94
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	158
XapI	RAATTY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.