Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010773

Physical Location & Seq

Genomic Coordinates Forward (+)

22096469 .. 22097966

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGTGGAGTTGAAGAGAAAGTTTCTGGAACGACAAAGACACCTGCAGATTTCCTCAAATCCATCCGTGGGAGACCCGTTGTTGTCAAGCTCAATTCTGGTGTTGATTATCGAGGCACTCTTACTTGTCTTGATGGATATATGAACATAGCAATGGAGCAGACGGAGGAGTATGTAAACGGGCAGCTCAAGAACAAATATGGTGACGCCTTTATCCGTGGAAACAACGTTCTTTACATCAGTACAGTAAACATGACTGTAGCAGACGGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016072 GO:0022613 GO:0030490 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

91

Amino Acids

9.91

Weight (kDa)

6.17

Isoelectric Point (pI)

26.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	17 - 81	1.2e-20	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43810 AT2G43810 AT2G43810 AT3G59810 AT3G59810 AT3G59810
fragaria_vesca	FvH4_1g00440
malus_domestica	MD02G1003600.v1.1 MD15G1146900.v1.1
prunus_persica	Prupe.7G267700_v2.0.a1
pyrus_communis	pycom15g13170
rosa_chinensis	RchiOBHm_Chr2g0084951 RchiOBHm_Chr7g0189461
rosa_multiflora	Rmu_sc0008647.1_g000026
rosa_rugosa	Rorug01G0457100 Rorug01G0457200 Rorug01G0457300
rosa_samantha	Rh2CG006600 Rh2DG006400
rosa_wichuraiana	Rw2G000480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AclI	AACGTT	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	14
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	91, 187
AluI	AGCT	2 cut(s)	91, 187
Alw26I	GTCTC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	71, 128
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	274
BfmI	CTRYAG	2 cut(s)	45, 258
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	67, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	67, 217
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	271
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	67, 217
BssNI	GRCGYC	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	247, 259
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	207
BstDSI	CCRYGG	2 cut(s)	67, 217
BstF5I	GGATG	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSFI	CTRYAG	2 cut(s)	45, 258
BstV1I	GCAGC	1 cut(s)	196
BtgI	CCRYGG	2 cut(s)	67, 217
BtsCI	GGATG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	52
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	3 cut(s)	91, 187, 272
CviKI_1	RGCY	3 cut(s)	91, 187, 272
CviQI	GTAC	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	256
FaiI	YATR	6 cut(s)	141, 143, 149, 174, 201, 254
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	274
GluI	GCNGC	1 cut(s)	185
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	178, 250
Hpy188III	TCNNGA	3 cut(s)	27, 131, 190
Hpy8I	GTNNAC	2 cut(s)	178, 250
HpyCH4III	ACNGT	2 cut(s)	247, 259
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	157, 269
LpnPI	CCDG	3 cut(s)	12, 57, 84
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	274
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	26
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	3 cut(s)	65, 107, 160
MslI	CAYNNNNRTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	269
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	186
Psp1406I	AACGTT	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	49
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	152
SatI	GCNGC	1 cut(s)	185
SetI	ASST	4 cut(s)	46, 93, 189, 231
SfcI	CTRYAG	2 cut(s)	45, 258
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	247, 259
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	112
TasI	AATT	1 cut(s)	94
TatI	WGTACW	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	3 cut(s)	56, 179, 206
XspI	CTAG	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.