AT2G46390

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
19042301 .. 19043234
934 bp
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UTR
Exon/CDS
Intron
AT2G46390.1

Sequence Viewer

Length: 141 bp
ATGATTTACCGAAAGTGGAGTTTGCTGTCCGGCCCACCGGTTATCCTCGGCGGAGCGGTAATTGCTGCCGTCGCCGTCGGATTCGTCTTGCAAAACGTAACGAAAGGGGAGCAGAAGAAGAATGTCTCAACAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

46

Amino Acids

4.88

Weight (kDa)

10.29

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46390
malus_domestica MD01G1077100.v1.1 MD07G1146600.v1.1
prunus_persica Prupe.2G184600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359021
rosa_laevigata RLG00000027908
rosa_multiflora Rmu_sc0002829.1_g000012
rosa_roxburghii Rroxscaffold_4G00297450
rosa_samantha Rh1AG280500 Rh7DG250000
rosa_wichuraiana Rw1G024940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 2 cut(s) 51, 56
AgeI ACCGGT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 130
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 65
AsiGI ACCGGT 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 52
BceAI ACGGC 2 cut(s) 53, 59
BcoDI GTCTC 1 cut(s) 130
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 33
BshTI ACCGGT 1 cut(s) 37
BsiSI CCGG 2 cut(s) 30, 38
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 33
BspACI CCGC 2 cut(s) 51, 56
BspANI GGCC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 62, 71
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 32
CspAI ACCGGT 1 cut(s) 37
CviJI RGCY 1 cut(s) 33
CviKI_1 RGCY 1 cut(s) 33
EciI GGCGGA 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 30, 38
HinfI GANTC 1 cut(s) 81
HpaII CCGG 2 cut(s) 30, 38
Hpy188I TCNGA 1 cut(s) 80
Hpy99I CGWCG 2 cut(s) 74, 80
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 71
HpySE526I ACGT 1 cut(s) 96
LmnI GCTCC 2 cut(s) 53, 109
LpnPI CCDG 2 cut(s) 43, 51
Lsp1109I GCAGC 1 cut(s) 52
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 97
MbiI CCGCTC 1 cut(s) 56
MboII GAAGA 2 cut(s) 127, 130
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 1 cut(s) 56
MspI CCGG 2 cut(s) 30, 38
MwoI GCNNNNNNNGC 2 cut(s) 62, 71
NmeAIII GCCGAG 1 cut(s) 27
PfeI GAWTC 1 cut(s) 81
PinAI ACCGGT 1 cut(s) 37
PkrI GCNGC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 32
SatI GCNGC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 32
SetI ASST 1 cut(s) 99
SgeI CNNG 4 cut(s) 42, 50, 59, 100
Sse9I AATT 1 cut(s) 60
SsiI CCGC 2 cut(s) 51, 56
TaiI ACGT 1 cut(s) 99
TasI AATT 1 cut(s) 60
TfiI GAWTC 1 cut(s) 81
TseI GCWGC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.