RLG00000027908

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017937
Physical Location & Seq
Forward (+)
16653035 .. 16654977
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027908

Sequence Viewer

Length: 1098 bp
ATGGCTGACGCTTTTGTGATCTTCGGCATTTTCGATCAAGATCTCAATCAATCTGAGGCACTTTTGTTCTTGAATAGATTGAGATGCGATGTCGAGATGATTAATGGAACTGGGTCGGTCTCGGATGGTGGATATTTCCCCTCCCATTGCTTCCAAGCTGAGTTTGATTCGATTGTGAGGCAAGTAATGGCCTCGGATTTAGATTTGCCCACTTCGCCGCTGGCAAGTCAGAATCTGAGCATGGATTCAAGTAGCAGTAAAGGGAAGGGAAATCCGGGCCAAAATGGGCTTGGCTGTACGAGGCCCAACCTGAGCCCAAAACACAGAGTCACCTTTCCACATACTACCAGTACTGAAATTAACAAAAAGCCGAAACGCACCAGAAATCTGAGACTCCGCGCGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAAGAAGAAGATGATATACAGGAAATGGAGTCTGCTGACTGGGCCCGTAGCTGTATTGGGAGGCATAGTCGGCACGGTCGTCGTCGCCCACTTCGTCTTCGTCGGTAACGTAAGTTCGTCTCCCCTTGATTTCTATTCATTTAGCATATCATCCAAACCAGATGAAAGCTTTACGATTTCGAGTTCTGGGGTTTCAGTGATTCAGTTTTTTTTTATTGAAGTTTTAGGATTTAGGACGATCGGTTTGTACTTGGGTTCTGTGAATAAGATTGGCTGGTATGAAAATTTTTATGGTGAGATCAACTCAGCAGATTCAGTTTCGGGTTACAATTTGTTAATGGGGCATGGGTATTGTGGCTTTTCTGGAGTATATGGTGAGATTAGGTTCTGGGATACAAGGTGTGGAAATGTAGTTAGGGAAATACAAGAGAAAGTTGATTGCTTTTCGGATGTCATGGTTTCGGAAAACTTGTTAGCAATGTTCAAGATTGGTGTGAATTCCGGTGGGATGTTCGTTGTTGATTTGAGAAATTTAGGTGTAAAGCAGGCTTGGGTTTGTCATGAAAGCCAAGTGTGCTCTGAGAAGAGCAGTGAAGTTGGGTCAGATGACAGGCACCTTAGGATGAATGTAATGGGGAGAATGATAGGGGAGATTCCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2

Protein Analysis

366

Amino Acids

40.43

Weight (kDa)

5.61

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46390
malus_domestica MD01G1077100.v1.1 MD07G1146600.v1.1
prunus_persica Prupe.2G184600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359021
rosa_laevigata RLG00000027908
rosa_multiflora Rmu_sc0002829.1_g000012
rosa_roxburghii Rroxscaffold_4G00297450
rosa_samantha Rh1AG280500 Rh7DG250000
rosa_wichuraiana Rw1G024940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1047
AccII CGCG 2 cut(s) 399, 401
AciI CCGC 2 cut(s) 218, 397
AcsI RAATTY 3 cut(s) 718, 931, 964
AfaI GTAC 3 cut(s) 298, 352, 683
AgsI TTSAA 4 cut(s) 73, 249, 653, 919
AjnI CCWGG 1 cut(s) 1090
AluBI AGCT 3 cut(s) 158, 485, 603
AluI AGCT 3 cut(s) 158, 485, 603
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 3 cut(s) 124, 385, 558
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 4 cut(s) 189, 277, 302, 476
ApaI GGGCCC 1 cut(s) 480
ApoI RAATTY 3 cut(s) 718, 931, 964
ArsI GACNNNNNNTTYG 2 cut(s) 661, 693
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 4 cut(s) 277, 303, 476, 477
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 3 cut(s) 322, 740, 821
AxyI CCTNAGG 1 cut(s) 1052
BaeGI GKGCMC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 1047
BanII GRGCYC 2 cut(s) 317, 480
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
BbsI GAAGAC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 1013
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 1 cut(s) 1092
BciVI GTATCC 1 cut(s) 820
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 3 cut(s) 124, 385, 558
BfuI GTATCC 1 cut(s) 820
BglII AGATCT 1 cut(s) 40
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 276, 1092
BmgT120I GGNCC 4 cut(s) 277, 303, 476, 477
BmiI GGNNCC 2 cut(s) 478, 1049
BmrFI CCNGG 2 cut(s) 276, 1092
BmrI ACTGGG 2 cut(s) 120, 483
BmsI GCATC 1 cut(s) 74
BmuI ACTGGG 2 cut(s) 120, 483
BpiI GAAGAC 1 cut(s) 523
BplI GAGNNNNNCTC 2 cut(s) 722, 754
BpmI CTGGAG 1 cut(s) 819
Bpu10I CCTNAGC 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 276
BsaBI GATNNNNATC 2 cut(s) 39, 45
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 935
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bse1I ACTGG 3 cut(s) 115, 348, 478
Bse21I CCTNAGG 1 cut(s) 1052
Bse3DI GCAATG 2 cut(s) 145, 918
Bse8I GATNNNNATC 2 cut(s) 39, 45
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 5 cut(s) 130, 584, 889, 948, 1062
BseJI GATNNNNATC 2 cut(s) 39, 45
BseMI GCAATG 2 cut(s) 145, 918
BseMII CTCAG 7 cut(s) 45, 150, 227, 302, 380, 753, 1005
BseNI ACTGG 3 cut(s) 115, 348, 478
BseSI GKGCMC 1 cut(s) 480
Bsh1236I CGCG 2 cut(s) 399, 401
Bsh1285I CGRYCG 2 cut(s) 513, 675
BshFI GGCC 4 cut(s) 191, 279, 304, 478
BshNI GGYRCC 1 cut(s) 1047
BsiEI CGRYCG 2 cut(s) 513, 675
BsiHKAI GWGCWC 1 cut(s) 1013
BsiSI CCGG 2 cut(s) 275, 936
BsmAI GTCTC 3 cut(s) 124, 385, 558
BsmBI CGTCTC 1 cut(s) 558
BsnI GGCC 4 cut(s) 191, 279, 304, 478
Bso31I GGTCTC 1 cut(s) 124
Bsp120I GGGCCC 1 cut(s) 476
Bsp1286I GDGCHC 3 cut(s) 317, 480, 1013
Bsp143I GATC 5 cut(s) 18, 34, 40, 672, 732
BspACI CCGC 2 cut(s) 218, 397
BspANI GGCC 4 cut(s) 191, 279, 304, 478
BspCNI CTCAG 7 cut(s) 46, 151, 228, 303, 381, 752, 1006
BspFNI CGCG 2 cut(s) 399, 401
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 2 cut(s) 478, 1049
BspQI GCTCTTC 1 cut(s) 1013
BspT107I GGYRCC 1 cut(s) 1047
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 145, 918
BsrI ACTGG 3 cut(s) 115, 348, 478
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 5 cut(s) 18, 34, 40, 672, 732
Bst2UI CCWGG 1 cut(s) 1092
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 1013
BstC8I GCNNGC 2 cut(s) 222, 981
BstDEI CTNAG 8 cut(s) 54, 159, 236, 311, 389, 739, 1014, 1052
BstF5I GGATG 5 cut(s) 130, 584, 889, 948, 1062
BstFNI CGCG 2 cut(s) 399, 401
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 5 cut(s) 21, 37, 43, 675, 735
BstMAI GTCTC 3 cut(s) 124, 385, 558
BstMBI GATC 5 cut(s) 18, 34, 40, 672, 732
BstMCI CGRYCG 2 cut(s) 513, 675
BstMWI GCNNNNNNNGC 4 cut(s) 214, 475, 504, 1008
BstNI CCWGG 1 cut(s) 1092
BstSCI CCNGG 2 cut(s) 274, 1090
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 2 cut(s) 399, 401
BstV2I GAAGAC 1 cut(s) 523
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 1052
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 4 cut(s) 191, 279, 304, 478
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 5 cut(s) 130, 584, 889, 948, 1062
BtsI GCAGTG 1 cut(s) 1030
BtsIMutI CAGTG 2 cut(s) 636, 1030
Cac8I GCNNGC 2 cut(s) 222, 981
CaiI CAGNNNCTG 1 cut(s) 235
CciI TCATGA 1 cut(s) 994
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 4 cut(s) 277, 303, 476, 477
CseI GACGC 1 cut(s) 17
Csp6I GTAC 3 cut(s) 297, 351, 682
CviAII CATG 4 cut(s) 241, 779, 889, 995
CviQI GTAC 3 cut(s) 297, 351, 682
DdeI CTNAG 8 cut(s) 54, 159, 236, 311, 389, 739, 1014, 1052
DpnI GATC 5 cut(s) 20, 36, 42, 674, 734
DpnII GATC 5 cut(s) 18, 34, 40, 672, 732
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
Eco24I GRGCYC 2 cut(s) 317, 480
Eco31I GGTCTC 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 1052
EcoRI GAATTC 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 1090
EcoT38I GRGCYC 2 cut(s) 317, 480
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 4 cut(s) 244, 782, 892, 998
FatI CATG 4 cut(s) 240, 778, 888, 994
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 5 cut(s) 137, 571, 896, 955, 1069
FriOI GRGCYC 2 cut(s) 317, 480
Fsp4HI GCNGC 1 cut(s) 218
GlaI GCGC 1 cut(s) 400
GluI GCNGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 819
HaeIII GGCC 4 cut(s) 191, 279, 304, 478
HapII CCGG 2 cut(s) 275, 936
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 401
Hin1II CATG 4 cut(s) 244, 782, 892, 998
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 9 cut(s) 167, 232, 245, 327, 393, 463, 634, 746, 1087
HpaII CCGG 2 cut(s) 275, 936
HphI GGTGA 3 cut(s) 322, 740, 821
Hpy188III TCNNGA 6 cut(s) 38, 70, 94, 798, 919, 995
Hpy99I CGWCG 3 cut(s) 518, 521, 539
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 1 cut(s) 543
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 475, 504, 1008
HpyF3I CTNAG 8 cut(s) 54, 159, 236, 311, 389, 739, 1014, 1052
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 4 cut(s) 244, 782, 892, 998
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 5 cut(s) 18, 34, 40, 672, 732
LguI GCTCTTC 1 cut(s) 1013
LweI GCATC 1 cut(s) 74
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 3 cut(s) 328, 539, 758
MalI GATC 5 cut(s) 20, 36, 42, 674, 734
MboI GATC 5 cut(s) 18, 34, 40, 672, 732
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 3 cut(s) 317, 480, 1013
MluCI AATT 5 cut(s) 357, 718, 763, 931, 964
MlyI GAGTC 3 cut(s) 336, 387, 472
MnlI CCTC 6 cut(s) 49, 151, 171, 202, 294, 488
MseI TTAA 3 cut(s) 102, 360, 770
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 2 cut(s) 275, 936
MspR9I CCNGG 2 cut(s) 276, 1092
MvaI CCWGG 1 cut(s) 1092
MvnI CGCG 2 cut(s) 399, 401
MwoI GCNNNNNNNGC 4 cut(s) 214, 475, 504, 1008
NciI CCSGG 1 cut(s) 276
NdeII GATC 5 cut(s) 18, 34, 40, 672, 732
NlaIII CATG 4 cut(s) 244, 782, 892, 998
NlaIV GGNNCC 2 cut(s) 478, 1049
NmuCI GTSAC 1 cut(s) 328
PagI TCATGA 1 cut(s) 994
PciSI GCTCTTC 1 cut(s) 1013
PcsI WCGNNNNNNNCGW 4 cut(s) 30, 510, 525, 540
PfeI GAWTC 6 cut(s) 167, 232, 245, 634, 746, 1087
PfoI TCCNGGA 1 cut(s) 1090
PkrI GCNGC 1 cut(s) 219
Ple19I CGATCG 1 cut(s) 675
PleI GAGTC 3 cut(s) 335, 387, 471
PpsI GAGTC 3 cut(s) 335, 387, 471
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 1090
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 2 cut(s) 478, 1049
PspOMI GGGCCC 1 cut(s) 476
PspPI GGNCC 4 cut(s) 277, 303, 476, 477
PsrI GAACNNNNNNTAC 2 cut(s) 532, 564
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 40
PvuI CGATCG 1 cut(s) 675
RsaI GTAC 3 cut(s) 298, 352, 683
RsaNI GTAC 3 cut(s) 297, 351, 682
SapI GCTCTTC 1 cut(s) 1013
SaqAI TTAA 3 cut(s) 102, 360, 770
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 5 cut(s) 18, 34, 40, 672, 732
Sau96I GGNCC 4 cut(s) 277, 303, 476, 477
ScaI AGTACT 1 cut(s) 352
SchI GAGTC 3 cut(s) 336, 387, 472
ScrFI CCNGG 2 cut(s) 276, 1092
SduI GDGCHC 3 cut(s) 317, 480, 1013
SfaNI GCATC 1 cut(s) 74
Sse9I AATT 5 cut(s) 357, 718, 763, 931, 964
SsiI CCGC 2 cut(s) 218, 397
StyD4I CCNGG 2 cut(s) 274, 1090
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 1 cut(s) 546
TaqI TCGA 4 cut(s) 33, 93, 170, 614
TaqII GACCGA 1 cut(s) 106
TasI AATT 5 cut(s) 357, 718, 763, 931, 964
TatI WGTACW 2 cut(s) 350, 681
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 6 cut(s) 167, 232, 245, 634, 746, 1087
Tru1I TTAA 3 cut(s) 102, 360, 770
Tru9I TTAA 3 cut(s) 102, 360, 770
TscAI CASTG 2 cut(s) 636, 1030
TseFI GTSAC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 5 cut(s) 561, 612, 729, 1011, 1073
TspRI CASTG 2 cut(s) 636, 1030
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 3 cut(s) 718, 931, 964
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 287
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.