Rh7DG250000

BTB POZ domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
25907450 .. 25907893
444 bp
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UTR
Exon/CDS
Intron
Rh7DG250000.1

Sequence Viewer

Length: 444 bp
ATGGGGTATGGGTATTATGCATTTTTTGGAGTGTATGGTGAGATTAGATTCTGGGATACAAGGTGTGGAAATGTAGTTTGGGATATACAAGAGAAAGTTGATTGCTTTTCGGATTTCATGGTTTCGGAAAACTTGTTAGCAATGTTCAAGATTGGTGTGAATTTTAGTGCAGTGTTCATTACAGATTTGAGAAATTTAGGTGTGGAGTGGGCTTGGGTTTGTCTTGGTAATAGGAAGAAAATGGTTATTGAAAAAAAGGAGGGATTGAAAGCCATGGAAGCCGAGTGTTTTGTAGTTGGGTGTGGGGAGGCGGAGAGAGATTTAGAGGTGTGCTCAGAGGTATTTATAGGCTCTAAGAAGAGTAGTGAAGGTGGGTCAGATGACATGCTCCTTAGGAAGTATGTAATGGGGACGATGGGGAGTATAGGGGAGATTCTAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

4.76

Isoelectric Point (pI)

21.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46390
malus_domestica MD01G1077100.v1.1 MD07G1146600.v1.1
prunus_persica Prupe.2G184600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359021
rosa_laevigata RLG00000027908
rosa_multiflora Rmu_sc0002829.1_g000012
rosa_roxburghii Rroxscaffold_4G00297450
rosa_samantha Rh1AG280500 Rh7DG250000
rosa_wichuraiana Rw1G024940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 160, 193
AgsI TTSAA 3 cut(s) 148, 251, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
Alw21I GWGCWC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 160, 193
AsuHPI GGTGA 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 335
BccI CCATC 1 cut(s) 409
BciVI GTATCC 1 cut(s) 49
BfaI CTAG 1 cut(s) 437
BfuI GTATCC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BsaJI CCNNGG 1 cut(s) 273
Bse21I CCTNAGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 335
BslFI GGGAC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 335
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 353
BstDEI CTNAG 3 cut(s) 334, 354, 392
BstDSI CCRYGG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 392
BsuI GTATCC 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
CviAII CATG 3 cut(s) 118, 274, 385
CviJI RGCY 4 cut(s) 212, 272, 281, 351
CviKI_1 RGCY 4 cut(s) 212, 272, 281, 351
DdeI CTNAG 3 cut(s) 334, 354, 392
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 273
Eco81I CCTNAGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 121, 277, 388
FaqI GGGAC 1 cut(s) 424
FatI CATG 3 cut(s) 117, 273, 384
FspBI CTAG 1 cut(s) 437
Hin1II CATG 3 cut(s) 121, 277, 388
HinfI GANTC 2 cut(s) 48, 433
HphI GGTGA 1 cut(s) 50
Hpy188I TCNGA 4 cut(s) 112, 127, 337, 379
Hpy188III TCNNGA 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 362
HpyCH4V TGCA 2 cut(s) 20, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 3 cut(s) 334, 354, 392
Hsp92II CATG 3 cut(s) 121, 277, 388
LmnI GCTCC 1 cut(s) 393
LpnPI CCDG 1 cut(s) 37
MaeI CTAG 1 cut(s) 437
MboII GAAGA 2 cut(s) 247, 370
MhlI GDGCHC 1 cut(s) 335
MluCI AATT 2 cut(s) 160, 193
MnlI CCTC 4 cut(s) 253, 301, 319, 331
Mph1103I ATGCAT 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 278
NcoI CCATGG 1 cut(s) 273
NlaIII CATG 3 cut(s) 121, 277, 388
NmeAIII GCCGAG 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 1 cut(s) 388
PfeI GAWTC 2 cut(s) 48, 433
SduI GDGCHC 1 cut(s) 335
SetI ASST 5 cut(s) 65, 202, 330, 342, 373
Sse9I AATT 2 cut(s) 160, 193
SsiI CCGC 1 cut(s) 311
SspMI CTAG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 273
TasI AATT 2 cut(s) 160, 193
TfiI GAWTC 2 cut(s) 48, 433
TscAI CASTG 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 106, 166
TspRI CASTG 1 cut(s) 177
XapI RAATTY 2 cut(s) 160, 193
XceI RCATGY 1 cut(s) 388
XspI CTAG 1 cut(s) 437
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.