MD07G1146600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017937
Physical Location & Seq
Reverse (-)
21359431 .. 21360529
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1146600.v1.1.491

Sequence Viewer

Length: 156 bp
ATGATATACAGGAAATGGAGTCTGTTAACGGGACCCGTCACGATCTTGGGGGGCATAGTAGGCACTGTCGTCGTCGCCAACTTCGTCTTCAATGATAACGATCGATTTCTGAAGCCGGAGGCAAGGAAGGCGGATGCATCCACTTCAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.58

Weight (kDa)

9.82

Isoelectric Point (pI)

4.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46390
malus_domestica MD01G1077100.v1.1 MD07G1146600.v1.1
prunus_persica Prupe.2G184600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359021
rosa_laevigata RLG00000027908
rosa_multiflora Rmu_sc0002829.1_g000012
rosa_roxburghii Rroxscaffold_4G00297450
rosa_samantha Rh1AG280500 Rh7DG250000
rosa_wichuraiana Rw1G024940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 91, 147
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AspS9I GGNCC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 33, 34
BmsI GCATC 2 cut(s) 124, 146
BpiI GAAGAC 1 cut(s) 79
Bsa29I ATCGAT 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 103
BseGI GGATG 2 cut(s) 137, 139
BseJI GATNNNNATC 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 45
Bsp143I GATC 2 cut(s) 42, 100
BspACI CCGC 1 cut(s) 131
BspDI ATCGAT 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 33, 34
BssMI GATC 2 cut(s) 42, 100
Bst4CI ACNGT 1 cut(s) 67
BstF5I GGATG 2 cut(s) 137, 139
BstKTI GATC 2 cut(s) 45, 103
BstMBI GATC 2 cut(s) 42, 100
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 60, 128
BstV2I GAAGAC 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 103
BtsCI GGATG 2 cut(s) 137, 139
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 103
CviJI RGCY 1 cut(s) 115
CviKI_1 RGCY 1 cut(s) 115
DpnI GATC 2 cut(s) 44, 102
DpnII GATC 2 cut(s) 42, 100
EciI GGCGGA 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 139
FaiI YATR 2 cut(s) 7, 56
FaqI GGGAC 1 cut(s) 45
FokI GGATG 2 cut(s) 124, 146
HapII CCGG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 1 cut(s) 19
HpaI GTTAAC 1 cut(s) 27
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 2 cut(s) 74, 77
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 128
KflI GGGWCCC 1 cut(s) 32
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 42, 100
LpnPI CCDG 1 cut(s) 129
LweI GCATC 2 cut(s) 124, 146
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 44, 102
MboI GATC 2 cut(s) 42, 100
MboII GAAGA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 139
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 60, 128
NdeII GATC 2 cut(s) 42, 100
NlaIV GGNNCC 2 cut(s) 33, 34
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 81
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 33, 34
PspPI GGNCC 1 cut(s) 32
PspPPI RGGWCCY 1 cut(s) 32
PvuI CGATCG 1 cut(s) 103
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 2 cut(s) 42, 100
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 28
SfaNI GCATC 2 cut(s) 124, 146
SgeI CNNG 7 cut(s) 22, 42, 47, 52, 58, 128, 135
SinI GGWCC 1 cut(s) 32
SsiI CCGC 1 cut(s) 131
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 103
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.