AT2G46510
BHLH Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
19090953 .. 19093373
2421 bp
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UTR
Exon/CDS
Intron
AT2G46510.1

Sequence Viewer

Length: 1701 bp
ATGAATATGAGTGATTTAGGTTGGGATGATGAAGATAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTCTAATTCGAATCAGAATCTCTTTCTTGTTATGGGAACTGATGATACTCTGAATAAGAAGCTCTCTAGTCTCGTTGATTGGCCAAACTCGGAGAATTTCAGCTGGAACTACGCTATTTTCTGGCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCGAGAGCCTAATGAGGAAGAGGAATCAAAAGTTGTTAGGTCTTATAATTTTAACAACATGGGGGCAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTGTTGCAGAAGCTTCATAGGTTGTTTGGTGGATCTGATGAAGACAATTATGCTTTGAGCTTAGAGAAAGTTACTGCTACTGAGATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGAAGGCGGTCCTGGGAGGTGTTATTCTTCAGGGAAACATGTGTGGCTCTCTGATGCAGTTAACTCTGAGTCTGACTATTGTTTCAGGTCTTTTATGGCGAAATCTGCGGGAATCAGAACGATCGTTATGGTTCCTACTGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGTTAAGTCTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCAGTAATGGTGACTTCAAACACTAACATGACTGGAGGGATTCACAAGCTTTTCGGGCAGGATTTGAGTGGAGCTCACGCGTATCCTAAGAAGCTCGAAGTGAGAAGAAACTTGGATGAGAGATTCACTCCTCAAAGTTGGGAAGGCTATAATAACAATAAAGGTCCAACATTTGGTTACACACCTCAGAGGGATGATGTGAAAGTGCTAGAGAATGTGAATATGGTTGTAGATAATAACAATTACAAGACGCAGATTGAGTTTGCGGGATCATCAGTTGCTGCTTCTTCGAATCCATCTACAAACACTCAGCAAGAAAAATCAGAATCTTGTACAGAGAAAAGACCAGTGAGCTTGTTAGCAGGAGCAGGAATAGTTTCTGTTGTTGATGAGAAGAGACCGAGAAAGAGAGGGAGAAAGCCTGCAAACGGAAGAGAAGAGCCATTGAACCATGTGGAAGCTGAGAGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTACGCTTTACGATCAGTTGTTCCAAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGAGACGCAATTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATAATGGAAGATGAAAGAGTAGGAACAGATAAGAGCTTATCAGAATCAAACACAATAACAGTAGAAGAAAGTCCAGAAGTTGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAATCTCGCCTTTGGATTCACATCCAGCTTCAAGAATCATACAAGCAATGAGAAACTCAAATGTTAGTCTAATGGAGGCTAAGTTATCATTAGCTGAAGACACAATGTTTCACACTTTTGTGATAAAGTCTAACAACGGGTCGGATCCATTGACGAAAGAGAAGCTTATAGCAGCGTTTTACCCCGAGACCAGCTCGACGCAACCGCCATTGCCTTCTTCTAGTTCACAGGTCTCTGGTGATATATAA

Protein Analysis

566

Amino Acids

63.3

Weight (kDa)

5.46

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 48 - 239 1.2e-53 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 395 - 441 4.6e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G46510
malus_domestica MD05G1202300.v1.1
rosa_chinensis RchiOBHm_Chr6g0268091
rosa_laevigata RLG00000013933
rosa_samantha Rh6BG153700 Rh6BG162900 Rh6CG155600 Rh6DG138500 Rh6DG148700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AccB7I CCANNNNNTGG 1 cut(s) 908
AccII CGCG 2 cut(s) 815, 1212
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 4 cut(s) 504, 605, 1001, 1658
AclWI GGATC 5 cut(s) 228, 412, 1012, 1592, 1605
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 2 cut(s) 510, 1569
AfaI GTAC 1 cut(s) 1069
AfiI CCNNNNNNNGG 2 cut(s) 908, 1163
AflIII ACRYGT 2 cut(s) 535, 813
AgsI TTSAA 7 cut(s) 490, 707, 753, 1183, 1322, 1424, 1485
AhdI GACNNNNNGTC 1 cut(s) 245
AjnI CCWGG 1 cut(s) 508
AleI CACNNNNGTG 1 cut(s) 1571
Alw21I GWGCWC 1 cut(s) 811
Alw26I GTCTC 7 cut(s) 167, 341, 1126, 1201, 1287, 1634, 1690
AlwI GGATC 5 cut(s) 228, 412, 1012, 1592, 1605
AlwNI CAGNNNCTG 1 cut(s) 1016
Ama87I CYCGRG 1 cut(s) 1637
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 1016, 1625
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 1111
AspS9I GGNCC 2 cut(s) 506, 899
AsuHPI GGTGA 2 cut(s) 509, 757
AsuII TTCGAA 2 cut(s) 101, 1025
AvaI CYCGRG 1 cut(s) 1637
AvaII GGWCC 2 cut(s) 506, 899
BalI TGGCCA 1 cut(s) 175
BamHI GGATCC 1 cut(s) 1597
BanII GRGCYC 1 cut(s) 811
BarI GAAGNNNNNNTAC 2 cut(s) 470, 502
BbsI GAAGAC 2 cut(s) 420, 1557
Bbv12I GWGCWC 1 cut(s) 811
BbvI GCAGC 2 cut(s) 1003, 1637
BccI CCATC 2 cut(s) 257, 1039
BciT130I CCWGG 1 cut(s) 510
BciVI GTATCC 1 cut(s) 828
BcoDI GTCTC 7 cut(s) 167, 341, 1126, 1201, 1287, 1634, 1690
BfaI CTAG 4 cut(s) 159, 231, 944, 1674
BfuI GTATCC 1 cut(s) 828
BisI GCNGC 2 cut(s) 1017, 1626
BlsI GCNGC 2 cut(s) 1018, 1627
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 506, 899
BmeRI GACNNNNNGTC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 1637
BmgT120I GGNCC 2 cut(s) 506, 899
BmiI GGNNCC 2 cut(s) 630, 1599
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 2 cut(s) 541, 628
BpiI GAAGAC 2 cut(s) 420, 1557
BplI GAGNNNNNCTC 6 cut(s) 793, 825, 847, 879, 1631, 1663
BpmI CTGGAG 1 cut(s) 789
Bpu14I TTCGAA 2 cut(s) 101, 1025
BpuEI CTTGAG 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 1473
BsaI GGTCTC 3 cut(s) 1126, 1634, 1690
BsaJI CCNNGG 1 cut(s) 509
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 1520, 1550
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1163
Bse1I ACTGG 3 cut(s) 737, 772, 1082
Bse3DI GCAATG 2 cut(s) 1506, 1661
Bse8I GATNNNNATC 1 cut(s) 1473
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 509
BseGI GGATG 4 cut(s) 31, 856, 934, 1474
BseJI GATNNNNATC 1 cut(s) 1473
BseLI CCNNNNNNNGG 2 cut(s) 908, 1163
BseMI GCAATG 2 cut(s) 1506, 1661
BseMII CTCAG 5 cut(s) 444, 555, 935, 1058, 1188
BseNI ACTGG 3 cut(s) 737, 772, 1082
BseRI GAGGAG 2 cut(s) 736, 855
BseXI GCAGC 2 cut(s) 1003, 1637
Bsh1236I CGCG 2 cut(s) 815, 1212
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 811
BsiHKCI CYCGRG 1 cut(s) 1637
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 908, 1163
BsmAI GTCTC 7 cut(s) 167, 341, 1126, 1201, 1287, 1634, 1690
BsmBI CGTCTC 2 cut(s) 1201, 1287
BsnI GGCC 1 cut(s) 175
Bso31I GGTCTC 3 cut(s) 1126, 1634, 1690
BsoBI CYCGRG 1 cut(s) 1637
Bsp119I TTCGAA 2 cut(s) 101, 1025
Bsp1286I GDGCHC 1 cut(s) 811
Bsp13I TCCGGA 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 1067
Bsp143I GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
BspACI CCGC 4 cut(s) 504, 605, 1001, 1658
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 5 cut(s) 445, 556, 934, 1057, 1189
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 2 cut(s) 815, 1212
BspHI TCATGA 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 630, 1599
BspPI GGATC 5 cut(s) 228, 412, 1012, 1592, 1605
BspQI GCTCTTC 1 cut(s) 1167
BspT104I TTCGAA 2 cut(s) 101, 1025
BspTNI GGTCTC 3 cut(s) 1126, 1634, 1690
BsrDI GCAATG 2 cut(s) 1506, 1661
BsrGI TGTACA 1 cut(s) 1067
BsrI ACTGG 3 cut(s) 737, 772, 1082
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 497, 1396
Bst6I CTCTTC 7 cut(s) 285, 339, 362, 1124, 1162, 1167, 1431
BstAUI TGTACA 1 cut(s) 1067
BstBI TTCGAA 2 cut(s) 101, 1025
BstC8I GCNNGC 1 cut(s) 1158
BstF5I GGATG 4 cut(s) 31, 856, 934, 1474
BstFNI CGCG 2 cut(s) 815, 1212
BstKTI GATC 6 cut(s) 236, 407, 621, 1007, 1247, 1600
BstMAI GTCTC 7 cut(s) 167, 341, 1126, 1201, 1287, 1634, 1690
BstMBI GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 2 cut(s) 602, 790
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 508
BstUI CGCG 2 cut(s) 815, 1212
BstV1I GCAGC 2 cut(s) 1003, 1637
BstV2I GAAGAC 2 cut(s) 420, 1557
BstX2I RGATCY 3 cut(s) 233, 404, 1597
BstYI RGATCY 3 cut(s) 233, 404, 1597
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 4 cut(s) 31, 856, 934, 1474
BtsIMutI CAGTG 1 cut(s) 1089
Cac8I GCNNGC 1 cut(s) 1158
CaiI CAGNNNCTG 1 cut(s) 1016
CciI TCATGA 1 cut(s) 717
Cfr13I GGNCC 2 cut(s) 506, 899
CseI GACGC 4 cut(s) 994, 1218, 1304, 1660
Csp6I GTAC 1 cut(s) 1068
CviAII CATG 8 cut(s) 226, 331, 351, 475, 536, 718, 763, 1187
CviQI GTAC 1 cut(s) 1068
DpnI GATC 6 cut(s) 235, 406, 620, 1006, 1246, 1599
DpnII GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
DriI GACNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 7 cut(s) 285, 339, 362, 1124, 1162, 1167, 1431
Eam1105I GACNNNNNGTC 1 cut(s) 245
EarI CTCTTC 7 cut(s) 285, 339, 362, 1124, 1162, 1167, 1431
Ecl136II GAGCTC 1 cut(s) 809
Eco24I GRGCYC 1 cut(s) 811
Eco31I GGTCTC 3 cut(s) 1126, 1634, 1690
Eco47I GGWCC 2 cut(s) 506, 899
Eco53kI GAGCTC 1 cut(s) 809
Eco57I CTGAAG 2 cut(s) 510, 1569
Eco88I CYCGRG 1 cut(s) 1637
EcoICRI GAGCTC 1 cut(s) 809
EcoRII CCWGG 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 811
Esp3I CGTCTC 2 cut(s) 1201, 1287
FaeI CATG 8 cut(s) 229, 334, 354, 478, 539, 721, 766, 1190
FalI AAGNNNNNCTT 2 cut(s) 1602, 1634
FatI CATG 8 cut(s) 225, 330, 350, 474, 535, 717, 762, 1186
FauI CCCGC 2 cut(s) 598, 994
Fnu4HI GCNGC 2 cut(s) 1017, 1626
FokI GGATG 4 cut(s) 38, 863, 941, 1461
FriOI GRGCYC 1 cut(s) 811
Fsp4HI GCNGC 2 cut(s) 1017, 1626
FspBI CTAG 4 cut(s) 159, 231, 944, 1674
GluI GCNGC 2 cut(s) 1017, 1626
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 237
HgaI GACGC 4 cut(s) 994, 1218, 1304, 1660
Hin1II CATG 8 cut(s) 229, 334, 354, 478, 539, 721, 766, 1190
HincII GTYRAC 2 cut(s) 559, 1417
HindII GTYRAC 2 cut(s) 559, 1417
HindIII AAGCTT 5 cut(s) 383, 708, 782, 1217, 1616
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 509, 757
Hpy166II GTNNAC 3 cut(s) 559, 1417, 1679
Hpy188III TCNNGA 9 cut(s) 231, 237, 275, 650, 718, 1322, 1333, 1409, 1485
Hpy8I GTNNAC 3 cut(s) 559, 1417, 1679
Hpy99I CGWCG 1 cut(s) 1654
HpyAV CCTTC 3 cut(s) 494, 872, 1677
HpyCH4III ACNGT 2 cut(s) 497, 1396
HpyCH4V TGCA 3 cut(s) 379, 554, 1160
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 790
Hsp92II CATG 8 cut(s) 229, 334, 354, 478, 539, 721, 766, 1190
Kpn2I TCCGGA 1 cut(s) 236
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
LguI GCTCTTC 1 cut(s) 1167
LmnI GCTCC 2 cut(s) 806, 1100
Lsp1109I GCAGC 2 cut(s) 1003, 1637
LweI GCATC 2 cut(s) 541, 628
MaeI CTAG 4 cut(s) 159, 231, 944, 1674
MaeIII GTNAC 4 cut(s) 442, 727, 745, 911
MalI GATC 6 cut(s) 235, 406, 620, 1006, 1246, 1599
MboI GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
MflI RGATCY 3 cut(s) 233, 404, 1597
MhlI GDGCHC 1 cut(s) 811
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 6 cut(s) 97, 187, 319, 418, 976, 1299
MluI ACGCGT 1 cut(s) 813
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 926, 1575
Mox20I TGGCCA 1 cut(s) 175
MroI TCCGGA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 1111
MscI TGGCCA 1 cut(s) 175
MseI TTAA 4 cut(s) 324, 558, 696, 1221
MslI CAYNNNNRTG 2 cut(s) 761, 1571
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 2 cut(s) 815, 1212
MwoI GCNNNNNNNGC 2 cut(s) 602, 790
NdeII GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
NlaIII CATG 8 cut(s) 229, 334, 354, 478, 539, 721, 766, 1190
NlaIV GGNNCC 2 cut(s) 630, 1599
NmuCI GTSAC 1 cut(s) 745
NspI RCATGY 1 cut(s) 539
NspV TTCGAA 2 cut(s) 101, 1025
OliI CACNNNNGTG 1 cut(s) 1571
PagI TCATGA 1 cut(s) 717
PciI ACATGT 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 1167
PdmI GAANNNNTTC 1 cut(s) 1111
PflMI CCANNNNNTGG 1 cut(s) 908
PkrI GCNGC 2 cut(s) 1018, 1627
Ple19I CGATCG 1 cut(s) 621
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PscI ACATGT 1 cut(s) 535
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 811
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 630, 1599
PspPI GGNCC 2 cut(s) 506, 899
PsrI GAACNNNNNNTAC 2 cut(s) 121, 153
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 3 cut(s) 233, 404, 1597
PvuI CGATCG 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 1 cut(s) 1069
RsaNI GTAC 1 cut(s) 1068
RseI CAYNNNNRTG 2 cut(s) 761, 1571
SacI GAGCTC 1 cut(s) 811
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 4 cut(s) 324, 558, 696, 1221
SatI GCNGC 2 cut(s) 1017, 1626
Sau3AI GATC 6 cut(s) 233, 404, 618, 1004, 1244, 1597
Sau96I GGNCC 2 cut(s) 506, 899
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 811
SfaNI GCATC 2 cut(s) 541, 628
SfuI TTCGAA 2 cut(s) 101, 1025
SinI GGWCC 2 cut(s) 506, 899
SmiMI CAYNNNNRTG 2 cut(s) 761, 1571
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 6 cut(s) 97, 187, 319, 418, 976, 1299
SsiI CCGC 4 cut(s) 504, 605, 1001, 1658
SspMI CTAG 4 cut(s) 159, 231, 944, 1674
SstI GAGCTC 1 cut(s) 811
StyD4I CCNGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 497, 1396
TaqI TCGA 6 cut(s) 85, 101, 274, 831, 1025, 1649
TaqII GACCGA 1 cut(s) 1150
TasI AATT 6 cut(s) 97, 187, 319, 418, 976, 1299
TatI WGTACW 1 cut(s) 1067
Tru1I TTAA 4 cut(s) 324, 558, 696, 1221
Tru9I TTAA 4 cut(s) 324, 558, 696, 1221
TscAI CASTG 1 cut(s) 1089
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 2 cut(s) 1016, 1625
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 8 cut(s) 17, 45, 377, 426, 706, 1362, 1445, 1449
TspGWI ACGGA 1 cut(s) 1179
TspRI CASTG 1 cut(s) 1089
Van91I CCANNNNNTGG 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 506, 899
XapI RAATTY 1 cut(s) 187
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 1 cut(s) 539
XmnI GAANNNNTTC 1 cut(s) 1111
XspI CTAG 4 cut(s) 159, 231, 944, 1674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.