Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46510 |
| malus_domestica | MD05G1202300.v1.1 |
| rosa_chinensis | RchiOBHm_Chr6g0268091 |
| rosa_laevigata | RLG00000013933 |
| rosa_samantha | Rh6BG153700 Rh6BG162900 Rh6CG155600 Rh6DG138500 Rh6DG148700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 318 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 908 |
| AccII | CGCG | 2 cut(s) | 815, 1212 |
| AccIII | TCCGGA | 1 cut(s) | 236 |
| AciI | CCGC | 4 cut(s) | 504, 605, 1001, 1658 |
| AclWI | GGATC | 5 cut(s) | 228, 412, 1012, 1592, 1605 |
| AcoI | YGGCCR | 1 cut(s) | 173 |
| AcsI | RAATTY | 1 cut(s) | 187 |
| AcuI | CTGAAG | 2 cut(s) | 510, 1569 |
| AfaI | GTAC | 1 cut(s) | 1069 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 908, 1163 |
| AflIII | ACRYGT | 2 cut(s) | 535, 813 |
| AgsI | TTSAA | 7 cut(s) | 490, 707, 753, 1183, 1322, 1424, 1485 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 245 |
| AjnI | CCWGG | 1 cut(s) | 508 |
| AleI | CACNNNNGTG | 1 cut(s) | 1571 |
| Alw21I | GWGCWC | 1 cut(s) | 811 |
| Alw26I | GTCTC | 7 cut(s) | 167, 341, 1126, 1201, 1287, 1634, 1690 |
| AlwI | GGATC | 5 cut(s) | 228, 412, 1012, 1592, 1605 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1016 |
| Ama87I | CYCGRG | 1 cut(s) | 1637 |
| Aor13HI | TCCGGA | 1 cut(s) | 236 |
| AoxI | GGCC | 1 cut(s) | 173 |
| ApeKI | GCWGC | 2 cut(s) | 1016, 1625 |
| ApoI | RAATTY | 1 cut(s) | 187 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1111 |
| AspS9I | GGNCC | 2 cut(s) | 506, 899 |
| AsuHPI | GGTGA | 2 cut(s) | 509, 757 |
| AsuII | TTCGAA | 2 cut(s) | 101, 1025 |
| AvaI | CYCGRG | 1 cut(s) | 1637 |
| AvaII | GGWCC | 2 cut(s) | 506, 899 |
| BalI | TGGCCA | 1 cut(s) | 175 |
| BamHI | GGATCC | 1 cut(s) | 1597 |
| BanII | GRGCYC | 1 cut(s) | 811 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 470, 502 |
| BbsI | GAAGAC | 2 cut(s) | 420, 1557 |
| Bbv12I | GWGCWC | 1 cut(s) | 811 |
| BbvI | GCAGC | 2 cut(s) | 1003, 1637 |
| BccI | CCATC | 2 cut(s) | 257, 1039 |
| BciT130I | CCWGG | 1 cut(s) | 510 |
| BciVI | GTATCC | 1 cut(s) | 828 |
| BcoDI | GTCTC | 7 cut(s) | 167, 341, 1126, 1201, 1287, 1634, 1690 |
| BfaI | CTAG | 4 cut(s) | 159, 231, 944, 1674 |
| BfuI | GTATCC | 1 cut(s) | 828 |
| BisI | GCNGC | 2 cut(s) | 1017, 1626 |
| BlsI | GCNGC | 2 cut(s) | 1018, 1627 |
| Bme1390I | CCNGG | 1 cut(s) | 510 |
| Bme18I | GGWCC | 2 cut(s) | 506, 899 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 245 |
| BmeT110I | CYCGRG | 1 cut(s) | 1637 |
| BmgT120I | GGNCC | 2 cut(s) | 506, 899 |
| BmiI | GGNNCC | 2 cut(s) | 630, 1599 |
| BmrFI | CCNGG | 1 cut(s) | 510 |
| BmsI | GCATC | 2 cut(s) | 541, 628 |
| BpiI | GAAGAC | 2 cut(s) | 420, 1557 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 793, 825, 847, 879, 1631, 1663 |
| BpmI | CTGGAG | 1 cut(s) | 789 |
| Bpu14I | TTCGAA | 2 cut(s) | 101, 1025 |
| BpuEI | CTTGAG | 1 cut(s) | 671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1473 |
| BsaI | GGTCTC | 3 cut(s) | 1126, 1634, 1690 |
| BsaJI | CCNNGG | 1 cut(s) | 509 |
| BsaWI | WCCGGW | 1 cut(s) | 236 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1520, 1550 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 908, 1163 |
| Bse1I | ACTGG | 3 cut(s) | 737, 772, 1082 |
| Bse3DI | GCAATG | 2 cut(s) | 1506, 1661 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1473 |
| BseAI | TCCGGA | 1 cut(s) | 236 |
| BseBI | CCWGG | 1 cut(s) | 510 |
| BseDI | CCNNGG | 1 cut(s) | 509 |
| BseGI | GGATG | 4 cut(s) | 31, 856, 934, 1474 |
| BseJI | GATNNNNATC | 1 cut(s) | 1473 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 908, 1163 |
| BseMI | GCAATG | 2 cut(s) | 1506, 1661 |
| BseMII | CTCAG | 5 cut(s) | 444, 555, 935, 1058, 1188 |
| BseNI | ACTGG | 3 cut(s) | 737, 772, 1082 |
| BseRI | GAGGAG | 2 cut(s) | 736, 855 |
| BseXI | GCAGC | 2 cut(s) | 1003, 1637 |
| Bsh1236I | CGCG | 2 cut(s) | 815, 1212 |
| Bsh1285I | CGRYCG | 1 cut(s) | 621 |
| BshFI | GGCC | 1 cut(s) | 175 |
| BsiEI | CGRYCG | 1 cut(s) | 621 |
| BsiHKAI | GWGCWC | 1 cut(s) | 811 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1637 |
| BsiSI | CCGG | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 908, 1163 |
| BsmAI | GTCTC | 7 cut(s) | 167, 341, 1126, 1201, 1287, 1634, 1690 |
| BsmBI | CGTCTC | 2 cut(s) | 1201, 1287 |
| BsnI | GGCC | 1 cut(s) | 175 |
| Bso31I | GGTCTC | 3 cut(s) | 1126, 1634, 1690 |
| BsoBI | CYCGRG | 1 cut(s) | 1637 |
| Bsp119I | TTCGAA | 2 cut(s) | 101, 1025 |
| Bsp1286I | GDGCHC | 1 cut(s) | 811 |
| Bsp13I | TCCGGA | 1 cut(s) | 236 |
| Bsp1407I | TGTACA | 1 cut(s) | 1067 |
| Bsp143I | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| BspACI | CCGC | 4 cut(s) | 504, 605, 1001, 1658 |
| BspANI | GGCC | 1 cut(s) | 175 |
| BspCNI | CTCAG | 5 cut(s) | 445, 556, 934, 1057, 1189 |
| BspEI | TCCGGA | 1 cut(s) | 236 |
| BspFNI | CGCG | 2 cut(s) | 815, 1212 |
| BspHI | TCATGA | 1 cut(s) | 717 |
| BspLI | GGNNCC | 2 cut(s) | 630, 1599 |
| BspPI | GGATC | 5 cut(s) | 228, 412, 1012, 1592, 1605 |
| BspQI | GCTCTTC | 1 cut(s) | 1167 |
| BspT104I | TTCGAA | 2 cut(s) | 101, 1025 |
| BspTNI | GGTCTC | 3 cut(s) | 1126, 1634, 1690 |
| BsrDI | GCAATG | 2 cut(s) | 1506, 1661 |
| BsrGI | TGTACA | 1 cut(s) | 1067 |
| BsrI | ACTGG | 3 cut(s) | 737, 772, 1082 |
| BssECI | CCNNGG | 1 cut(s) | 509 |
| BssMI | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| Bst2UI | CCWGG | 1 cut(s) | 510 |
| Bst4CI | ACNGT | 2 cut(s) | 497, 1396 |
| Bst6I | CTCTTC | 7 cut(s) | 285, 339, 362, 1124, 1162, 1167, 1431 |
| BstAUI | TGTACA | 1 cut(s) | 1067 |
| BstBI | TTCGAA | 2 cut(s) | 101, 1025 |
| BstC8I | GCNNGC | 1 cut(s) | 1158 |
| BstF5I | GGATG | 4 cut(s) | 31, 856, 934, 1474 |
| BstFNI | CGCG | 2 cut(s) | 815, 1212 |
| BstKTI | GATC | 6 cut(s) | 236, 407, 621, 1007, 1247, 1600 |
| BstMAI | GTCTC | 7 cut(s) | 167, 341, 1126, 1201, 1287, 1634, 1690 |
| BstMBI | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| BstMCI | CGRYCG | 1 cut(s) | 621 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 602, 790 |
| BstNI | CCWGG | 1 cut(s) | 510 |
| BstNSI | RCATGY | 1 cut(s) | 539 |
| BstSCI | CCNGG | 1 cut(s) | 508 |
| BstUI | CGCG | 2 cut(s) | 815, 1212 |
| BstV1I | GCAGC | 2 cut(s) | 1003, 1637 |
| BstV2I | GAAGAC | 2 cut(s) | 420, 1557 |
| BstX2I | RGATCY | 3 cut(s) | 233, 404, 1597 |
| BstYI | RGATCY | 3 cut(s) | 233, 404, 1597 |
| BsuI | GTATCC | 1 cut(s) | 828 |
| BsuRI | GGCC | 1 cut(s) | 175 |
| BtsCI | GGATG | 4 cut(s) | 31, 856, 934, 1474 |
| BtsIMutI | CAGTG | 1 cut(s) | 1089 |
| Cac8I | GCNNGC | 1 cut(s) | 1158 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1016 |
| CciI | TCATGA | 1 cut(s) | 717 |
| Cfr13I | GGNCC | 2 cut(s) | 506, 899 |
| CseI | GACGC | 4 cut(s) | 994, 1218, 1304, 1660 |
| Csp6I | GTAC | 1 cut(s) | 1068 |
| CviAII | CATG | 8 cut(s) | 226, 331, 351, 475, 536, 718, 763, 1187 |
| CviQI | GTAC | 1 cut(s) | 1068 |
| DpnI | GATC | 6 cut(s) | 235, 406, 620, 1006, 1246, 1599 |
| DpnII | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| DriI | GACNNNNNGTC | 1 cut(s) | 245 |
| EaeI | YGGCCR | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 7 cut(s) | 285, 339, 362, 1124, 1162, 1167, 1431 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 245 |
| EarI | CTCTTC | 7 cut(s) | 285, 339, 362, 1124, 1162, 1167, 1431 |
| Ecl136II | GAGCTC | 1 cut(s) | 809 |
| Eco24I | GRGCYC | 1 cut(s) | 811 |
| Eco31I | GGTCTC | 3 cut(s) | 1126, 1634, 1690 |
| Eco47I | GGWCC | 2 cut(s) | 506, 899 |
| Eco53kI | GAGCTC | 1 cut(s) | 809 |
| Eco57I | CTGAAG | 2 cut(s) | 510, 1569 |
| Eco88I | CYCGRG | 1 cut(s) | 1637 |
| EcoICRI | GAGCTC | 1 cut(s) | 809 |
| EcoRII | CCWGG | 1 cut(s) | 508 |
| EcoT38I | GRGCYC | 1 cut(s) | 811 |
| Esp3I | CGTCTC | 2 cut(s) | 1201, 1287 |
| FaeI | CATG | 8 cut(s) | 229, 334, 354, 478, 539, 721, 766, 1190 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1602, 1634 |
| FatI | CATG | 8 cut(s) | 225, 330, 350, 474, 535, 717, 762, 1186 |
| FauI | CCCGC | 2 cut(s) | 598, 994 |
| Fnu4HI | GCNGC | 2 cut(s) | 1017, 1626 |
| FokI | GGATG | 4 cut(s) | 38, 863, 941, 1461 |
| FriOI | GRGCYC | 1 cut(s) | 811 |
| Fsp4HI | GCNGC | 2 cut(s) | 1017, 1626 |
| FspBI | CTAG | 4 cut(s) | 159, 231, 944, 1674 |
| GluI | GCNGC | 2 cut(s) | 1017, 1626 |
| GsuI | CTGGAG | 1 cut(s) | 789 |
| HaeIII | GGCC | 1 cut(s) | 175 |
| HapII | CCGG | 1 cut(s) | 237 |
| HgaI | GACGC | 4 cut(s) | 994, 1218, 1304, 1660 |
| Hin1II | CATG | 8 cut(s) | 229, 334, 354, 478, 539, 721, 766, 1190 |
| HincII | GTYRAC | 2 cut(s) | 559, 1417 |
| HindII | GTYRAC | 2 cut(s) | 559, 1417 |
| HindIII | AAGCTT | 5 cut(s) | 383, 708, 782, 1217, 1616 |
| HpaI | GTTAAC | 1 cut(s) | 559 |
| HpaII | CCGG | 1 cut(s) | 237 |
| HphI | GGTGA | 2 cut(s) | 509, 757 |
| Hpy166II | GTNNAC | 3 cut(s) | 559, 1417, 1679 |
| Hpy188III | TCNNGA | 9 cut(s) | 231, 237, 275, 650, 718, 1322, 1333, 1409, 1485 |
| Hpy8I | GTNNAC | 3 cut(s) | 559, 1417, 1679 |
| Hpy99I | CGWCG | 1 cut(s) | 1654 |
| HpyAV | CCTTC | 3 cut(s) | 494, 872, 1677 |
| HpyCH4III | ACNGT | 2 cut(s) | 497, 1396 |
| HpyCH4V | TGCA | 3 cut(s) | 379, 554, 1160 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 602, 790 |
| Hsp92II | CATG | 8 cut(s) | 229, 334, 354, 478, 539, 721, 766, 1190 |
| Kpn2I | TCCGGA | 1 cut(s) | 236 |
| KspAI | GTTAAC | 1 cut(s) | 559 |
| Kzo9I | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| LguI | GCTCTTC | 1 cut(s) | 1167 |
| LmnI | GCTCC | 2 cut(s) | 806, 1100 |
| Lsp1109I | GCAGC | 2 cut(s) | 1003, 1637 |
| LweI | GCATC | 2 cut(s) | 541, 628 |
| MaeI | CTAG | 4 cut(s) | 159, 231, 944, 1674 |
| MaeIII | GTNAC | 4 cut(s) | 442, 727, 745, 911 |
| MalI | GATC | 6 cut(s) | 235, 406, 620, 1006, 1246, 1599 |
| MboI | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| MflI | RGATCY | 3 cut(s) | 233, 404, 1597 |
| MhlI | GDGCHC | 1 cut(s) | 811 |
| MlsI | TGGCCA | 1 cut(s) | 175 |
| MluCI | AATT | 6 cut(s) | 97, 187, 319, 418, 976, 1299 |
| MluI | ACGCGT | 1 cut(s) | 813 |
| MluNI | TGGCCA | 1 cut(s) | 175 |
| MlyI | GAGTC | 1 cut(s) | 575 |
| MmeI | TCCRAC | 2 cut(s) | 926, 1575 |
| Mox20I | TGGCCA | 1 cut(s) | 175 |
| MroI | TCCGGA | 1 cut(s) | 236 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1111 |
| MscI | TGGCCA | 1 cut(s) | 175 |
| MseI | TTAA | 4 cut(s) | 324, 558, 696, 1221 |
| MslI | CAYNNNNRTG | 2 cut(s) | 761, 1571 |
| Msp20I | TGGCCA | 1 cut(s) | 175 |
| MspA1I | CMGCKG | 1 cut(s) | 195 |
| MspI | CCGG | 1 cut(s) | 237 |
| MspR9I | CCNGG | 1 cut(s) | 510 |
| MvaI | CCWGG | 1 cut(s) | 510 |
| MvnI | CGCG | 2 cut(s) | 815, 1212 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 602, 790 |
| NdeII | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| NlaIII | CATG | 8 cut(s) | 229, 334, 354, 478, 539, 721, 766, 1190 |
| NlaIV | GGNNCC | 2 cut(s) | 630, 1599 |
| NmuCI | GTSAC | 1 cut(s) | 745 |
| NspI | RCATGY | 1 cut(s) | 539 |
| NspV | TTCGAA | 2 cut(s) | 101, 1025 |
| OliI | CACNNNNGTG | 1 cut(s) | 1571 |
| PagI | TCATGA | 1 cut(s) | 717 |
| PciI | ACATGT | 1 cut(s) | 535 |
| PciSI | GCTCTTC | 1 cut(s) | 1167 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1111 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 908 |
| PkrI | GCNGC | 2 cut(s) | 1018, 1627 |
| Ple19I | CGATCG | 1 cut(s) | 621 |
| PleI | GAGTC | 1 cut(s) | 574 |
| PpsI | GAGTC | 1 cut(s) | 574 |
| PscI | ACATGT | 1 cut(s) | 535 |
| PsiI | TTATAA | 1 cut(s) | 318 |
| Psp124BI | GAGCTC | 1 cut(s) | 811 |
| Psp6I | CCWGG | 1 cut(s) | 508 |
| PspGI | CCWGG | 1 cut(s) | 508 |
| PspN4I | GGNNCC | 2 cut(s) | 630, 1599 |
| PspPI | GGNCC | 2 cut(s) | 506, 899 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 121, 153 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1016 |
| PsuI | RGATCY | 3 cut(s) | 233, 404, 1597 |
| PvuI | CGATCG | 1 cut(s) | 621 |
| PvuII | CAGCTG | 1 cut(s) | 195 |
| RsaI | GTAC | 1 cut(s) | 1069 |
| RsaNI | GTAC | 1 cut(s) | 1068 |
| RseI | CAYNNNNRTG | 2 cut(s) | 761, 1571 |
| SacI | GAGCTC | 1 cut(s) | 811 |
| SapI | GCTCTTC | 1 cut(s) | 1167 |
| SaqAI | TTAA | 4 cut(s) | 324, 558, 696, 1221 |
| SatI | GCNGC | 2 cut(s) | 1017, 1626 |
| Sau3AI | GATC | 6 cut(s) | 233, 404, 618, 1004, 1244, 1597 |
| Sau96I | GGNCC | 2 cut(s) | 506, 899 |
| SchI | GAGTC | 1 cut(s) | 575 |
| ScrFI | CCNGG | 1 cut(s) | 510 |
| SduI | GDGCHC | 1 cut(s) | 811 |
| SfaNI | GCATC | 2 cut(s) | 541, 628 |
| SfuI | TTCGAA | 2 cut(s) | 101, 1025 |
| SinI | GGWCC | 2 cut(s) | 506, 899 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 761, 1571 |
| SmlI | CTYRAG | 1 cut(s) | 650 |
| SmoI | CTYRAG | 1 cut(s) | 650 |
| Sse9I | AATT | 6 cut(s) | 97, 187, 319, 418, 976, 1299 |
| SsiI | CCGC | 4 cut(s) | 504, 605, 1001, 1658 |
| SspMI | CTAG | 4 cut(s) | 159, 231, 944, 1674 |
| SstI | GAGCTC | 1 cut(s) | 811 |
| StyD4I | CCNGG | 1 cut(s) | 508 |
| TaaI | ACNGT | 2 cut(s) | 497, 1396 |
| TaqI | TCGA | 6 cut(s) | 85, 101, 274, 831, 1025, 1649 |
| TaqII | GACCGA | 1 cut(s) | 1150 |
| TasI | AATT | 6 cut(s) | 97, 187, 319, 418, 976, 1299 |
| TatI | WGTACW | 1 cut(s) | 1067 |
| Tru1I | TTAA | 4 cut(s) | 324, 558, 696, 1221 |
| Tru9I | TTAA | 4 cut(s) | 324, 558, 696, 1221 |
| TscAI | CASTG | 1 cut(s) | 1089 |
| TseFI | GTSAC | 1 cut(s) | 745 |
| TseI | GCWGC | 2 cut(s) | 1016, 1625 |
| Tsp45I | GTSAC | 1 cut(s) | 745 |
| TspDTI | ATGAA | 8 cut(s) | 17, 45, 377, 426, 706, 1362, 1445, 1449 |
| TspGWI | ACGGA | 1 cut(s) | 1179 |
| TspRI | CASTG | 1 cut(s) | 1089 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 908 |
| VpaK11BI | GGWCC | 2 cut(s) | 506, 899 |
| XapI | RAATTY | 1 cut(s) | 187 |
| XbaI | TCTAGA | 1 cut(s) | 230 |
| XceI | RCATGY | 1 cut(s) | 539 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1111 |
| XspI | CTAG | 4 cut(s) | 159, 231, 944, 1674 |