Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0018728

Physical Location & Seq

Genomic Coordinates Reverse (-)

33132649 .. 33133101

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1202300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATGGTTGACGGTTTCAATGTTCAGACAAGAGTCTCAAGTTCGGAGCTGCTCAAGGATGAGTCCTCGGCACAAATTGATGAGGGGAAACCCAGAAAGAGAGGGAGAAAGCCTGCCAATGGGAGAGAAGAACCATTGAATCACGTGGAAGCAGAACGGCAGAGGCGCGAGAAGCTTAACCAGAGGTTCTATGCACTAAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTTCTTGGTGATGCCATTACCTATATCACCGATCTCCAGAAGAAGATGAGAGTCATGGAAACTGAAAAGCAGATGGTAAACAACAAGGGAAAGCAGTTGCCGGTTCCAGAGATTGATTTTCAGGAACGCCTCGAGGATGCAGTTGTGAGGATGAACTGCCCATTGGATTCTCACCCGGTTTCTGAAGTCTTCAGAACACTTAGGGAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

151

Amino Acids

17.35

Weight (kDa)

9.06

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	47 - 93	9.3e-13	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46510
malus_domestica	MD05G1202300.v1.1
rosa_chinensis	RchiOBHm_Chr6g0268091
rosa_laevigata	RLG00000013933
rosa_samantha	Rh6BG153700 Rh6BG162900 Rh6CG155600 Rh6DG138500 Rh6DG148700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	371
AccII	CGCG	1 cut(s)	168
AcuI	CTGAAG	2 cut(s)	415, 444
AcvI	CACGTG	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	19, 139
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	3 cut(s)	49, 175, 203
AluI	AGCT	3 cut(s)	49, 175, 203
Alw26I	GTCTC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	259, 260, 404
AvaI	CYCGRG	1 cut(s)	371
BbrPI	CACGTG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	2 cut(s)	220, 307
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	241, 367
BoxI	GACNNNNGTC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	22, 38
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	64, 382, 396
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	341, 416
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	197, 440
BstF5I	GGATG	3 cut(s)	64, 382, 396
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 200
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	64, 382, 396
Cac8I	GCNNGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	340
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	5 cut(s)	49, 112, 175, 203, 236
CviKI_1	RGCY	5 cut(s)	49, 112, 175, 203, 236
DdeI	CTNAG	2 cut(s)	197, 440
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	415, 444
Eco72I	CACGTG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	371
FaeI	CATG	1 cut(s)	298
FaiI	YATR	4 cut(s)	192, 218, 264, 296
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	3 cut(s)	71, 389, 403
Fsp4HI	GCNGC	1 cut(s)	50
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	260
HapII	CCGG	2 cut(s)	341, 416
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	5 cut(s)	33, 62, 139, 291, 407
HpaII	CCGG	2 cut(s)	341, 416
HphI	GGTGA	3 cut(s)	259, 260, 404
Hpy166II	GTNNAC	2 cut(s)	10, 319
Hpy188I	TCNGA	4 cut(s)	27, 46, 424, 434
Hpy188III	TCNNGA	3 cut(s)	277, 347, 362
Hpy8I	GTNNAC	2 cut(s)	10, 319
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	194, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 200
HpyF3I	CTNAG	2 cut(s)	197, 440
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	106, 126, 194, 290, 347, 354, 360, 429
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	2 cut(s)	241, 367
MaeII	ACGT	1 cut(s)	144
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	6 cut(s)	140, 233, 235, 292, 295, 421
MluCI	AATT	1 cut(s)	75
MlyI	GAGTC	3 cut(s)	42, 71, 300
MnlI	CCTC	9 cut(s)	76, 76, 95, 156, 177, 247, 367, 380, 381
MseI	TTAA	2 cut(s)	177, 451
MspI	CCGG	2 cut(s)	341, 416
MspR9I	CCNGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	172, 200
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	47
PaeR7I	CTCGAG	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	139, 407
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	3 cut(s)	41, 70, 299
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	3 cut(s)	41, 70, 299
Ppu21I	YACGTR	1 cut(s)	145
PshAI	GACNNNNGTC	1 cut(s)	32
PspCI	CACGTG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	345
PspXI	VCTCGAGB	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	177, 451
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	271
SchI	GAGTC	3 cut(s)	42, 71, 300
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	6 cut(s)	51, 147, 177, 188, 205, 263
SfaNI	GCATC	2 cut(s)	241, 367
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	3 cut(s)	37, 53, 371
SmoI	CTYRAG	3 cut(s)	37, 53, 371
Sse9I	AATT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	221, 372
TasI	AATT	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	139, 407
Tru1I	TTAA	2 cut(s)	177, 451
Tru9I	TTAA	2 cut(s)	177, 451
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.