Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015966

Physical Location & Seq

Genomic Coordinates Reverse (-)

19129230 .. 19130712

Gene Structure 1483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAACACATGTAGCACCATGGAAGCAGCTTCTCTTTGGCGCCATTGAAGCCAATTCTCATCTAAGCCACTCTTCTTATGTTCAGCTCGCAACGATTGGTTTAAATGGACGGCCTTCGAATCGTACCGTCGTATTCAGGGGATTTGAAGAGAACAGTGACAGGATTCAAATCAACACCGATCTTCGCAGTCGTAAGATTGAAGAGCTTAAGCATTGTCCTTTTTCTGAGATGTGTTGGTATTTCTCGGATACTTGGGAGCAATTCCGGATCAATGGAAGAATTGAGGTCATTGATGCGTCCAATCCTGACCAGACCAAGCTTCAGCAAAGAGAGAAAGCTTGGTTTGCTAATTCTTTAAGGTCAAGGCTTATCTACGTCTGTCCTACTCCCGGTAGTCCTTGCAACAGCGAGCAATCAAGCCAACAAGTTAAATTAGATCCTTCAAGTGGTCCAGTTCCTGAATACTGCCTGCTGCTTCTAGAGCCAGAAAAGGTTGATTACTTGAATCTGAAAACTAATCAGAGGCTTTTCTTTTCTTCCATGGCTACTGGAACTGGAGAGAAGTGCTGGACTTCAGAAAAGGTTAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046184 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

Pyridox_oxase_2

Protein Analysis

198

Amino Acids

22.62

Weight (kDa)

6.89

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridox_oxase_2	PF12766	6 - 98	9.4e-32	Pyridoxamine 5'-phosphate oxidase
PNPOx_N	PF01243	20 - 119	5.7e-09	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46580
fragaria_vesca	FvH4_7g16970
malus_domestica	MD01G1084300.v1.1
prunus_persica	Prupe.2G192000_v2.0.a1 Prupe.2G192000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360221
rosa_laevigata	RLG00000027819
rosa_multiflora	Rmu_ssc0000368.1_g000051
rosa_roxburghii	Rroxscaffold_4G00296280
rosa_rugosa	Rorug01G0276100
rosa_samantha	Rh1AG289800 Rh1BG255400 Rh1CG272700 Rh1DG285000
rosa_wichuraiana	Rw1G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	267
AclWI	GGATC	2 cut(s)	278, 434
AcuI	CTGAAG	2 cut(s)	308, 561
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	392, 449
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	6 cut(s)	50, 149, 170, 203, 447, 508
AluBI	AGCT	5 cut(s)	31, 88, 208, 322, 341
AluI	AGCT	5 cut(s)	31, 88, 208, 322, 341
AlwI	GGATC	2 cut(s)	278, 434
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	28, 475
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	393
AsuII	TTCGAA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	40, 462
BceAI	ACGGC	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	393
BfaI	CTAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	29, 476
BlsI	GCNGC	2 cut(s)	30, 477
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	20, 543
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 449
Bse1I	ACTGG	3 cut(s)	455, 556, 562
Bse8I	GATNNNNATC	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	20, 543
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	392, 449
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	3 cut(s)	455, 556, 562
BseXI	GCAGC	2 cut(s)	40, 462
BshFI	GGCC	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	268, 393
BslI	CCNNNNNNNGG	2 cut(s)	392, 449
BsnI	GGCC	1 cut(s)	115
Bsp119I	TTCGAA	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	181, 270, 439
Bsp19I	CCATGG	2 cut(s)	20, 543
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	220
BspEI	TCCGGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	278, 434
BspQI	GCTCTTC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	455, 556, 562
BssECI	CCNNGG	2 cut(s)	20, 543
BssMI	GATC	3 cut(s)	181, 270, 439
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	2 cut(s)	20, 543
Bst4CI	ACNGT	2 cut(s)	130, 158
Bst6I	CTCTTC	3 cut(s)	79, 144, 198
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	90, 413, 473
BstDEI	CTNAG	2 cut(s)	65, 228
BstDSI	CCRYGG	2 cut(s)	20, 543
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	3 cut(s)	184, 273, 442
BstMBI	GATC	3 cut(s)	181, 270, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 347, 484
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	40, 462
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	115
BtgI	CCRYGG	2 cut(s)	20, 543
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	90, 413, 473
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	3 cut(s)	11, 21, 544
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	2 cut(s)	65, 228
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	3 cut(s)	183, 272, 441
DpnII	GATC	3 cut(s)	181, 270, 439
DraI	TTTAAA	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	79, 144, 198
EarI	CTCTTC	3 cut(s)	79, 144, 198
Eco130I	CCWWGG	2 cut(s)	20, 543
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	308, 561
EcoT14I	CCWWGG	2 cut(s)	20, 543
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	20, 543
FaeI	CATG	3 cut(s)	14, 24, 547
FaiI	YATR	5 cut(s)	12, 22, 81, 545, 595
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FatI	CATG	3 cut(s)	10, 20, 543
Fnu4HI	GCNGC	2 cut(s)	29, 476
Fsp4HI	GCNGC	2 cut(s)	29, 476
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	29, 476
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	2 cut(s)	268, 393
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	14, 24, 547
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	2 cut(s)	320, 339
HinfI	GANTC	3 cut(s)	121, 166, 508
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	2 cut(s)	268, 393
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	5 cut(s)	229, 250, 513, 525, 580
Hpy188III	TCNNGA	4 cut(s)	268, 308, 461, 482
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	126, 453
HpyCH4III	ACNGT	2 cut(s)	130, 158
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 347, 484
HpyF3I	CTNAG	2 cut(s)	65, 228
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	14, 24, 547
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	267
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	181, 270, 439
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	40, 462
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	183, 272, 441
MboI	GATC	3 cut(s)	181, 270, 439
MboII	GAAGA	6 cut(s)	66, 161, 176, 215, 291, 531
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	5 cut(s)	55, 263, 282, 352, 434
Mly113I	GGCGCC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	280, 519
MroI	TCCGGA	1 cut(s)	267
MseI	TTAA	5 cut(s)	104, 210, 359, 432, 588
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	268, 393
MspR9I	CCNGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	50, 347, 484
NarI	GGCGCC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	393
NcoI	CCATGG	2 cut(s)	20, 543
NdeII	GATC	3 cut(s)	181, 270, 439
NlaIII	CATG	3 cut(s)	14, 24, 547
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	119
PciI	ACATGT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	121, 166, 508
PkrI	GCNGC	2 cut(s)	30, 477
PluTI	GGCGCC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	5 cut(s)	104, 210, 359, 432, 588
SatI	GCNGC	2 cut(s)	29, 476
Sau3AI	GATC	3 cut(s)	181, 270, 439
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	286
SfoI	GGCGCC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	119
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	55, 263, 282, 352, 434
SspDI	GGCGCC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	20, 543
TaaI	ACNGT	2 cut(s)	130, 158
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	119
TasI	AATT	5 cut(s)	55, 263, 282, 352, 434
TfiI	GAWTC	3 cut(s)	121, 166, 508
Tru1I	TTAA	5 cut(s)	104, 210, 359, 432, 588
Tru9I	TTAA	5 cut(s)	104, 210, 359, 432, 588
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	28, 475
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.