Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015966

Physical Location & Seq

Genomic Coordinates Reverse (-)

19046008 .. 19048337

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1084300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAACACTAACAGCGCCGGCGCCATGGAAGCAGCTCCTTCTCAGCGCAATGGAATCAAATTCCCACCTCAGGCACTCTTCCTACATTCAGCTAGCTACGATCGGTTGTAACGGGAGACCTTCAAATCGGACCGTTGTTTTCAGGGGATTTCAAGAGGACAGTGATAAGATTCAAATCCACACCGATTGCAGAAGTCGTAAGATTGAGGAGCTTAAGAATTGCCCTTTTGCTGAGATATGTTGGTACTTTACTGATTCGTGGGAGCAATTTCGGATCAATGGAATAGTTGACATGATTGATGGATCAGATCCCGACGCCGTAAAACTTAAGCAAAGAGAGAAATGTTGGTTCTCCACTTCTCTGAGATCAAGACTGCAGTATTTGGGGCCGCATCCAGGACTTCCTGATCCGAGTGAAGAAACACCGGCGCAAGTGTTTCTTGACCCTTCTGCAGGCCCGGCTGCTGCGTTTTGCGTGCTTGTTCTGGACCCTCAACAGGTTGATTTCTTGAATCTGACGAGTAACCAGAGGGTAACATTTTCATCGACGCAAAGTCCCAATGGAGACAAGTGCTGGACTTCAGAAAGGGTTAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046184 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

Pyridox_oxase_2

Protein Analysis

201

Amino Acids

22.52

Weight (kDa)

5.8

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridox_oxase_2	PF12766	8 - 100	6.3e-31	Pyridoxamine 5'-phosphate oxidase
PNPOx_N	PF01243	24 - 104	1.8e-06	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46580
fragaria_vesca	FvH4_7g16970
malus_domestica	MD01G1084300.v1.1
prunus_persica	Prupe.2G192000_v2.0.a1 Prupe.2G192000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360221
rosa_laevigata	RLG00000027819
rosa_multiflora	Rmu_ssc0000368.1_g000051
rosa_roxburghii	Rroxscaffold_4G00296280
rosa_rugosa	Rorug01G0276100
rosa_samantha	Rh1AG289800 Rh1BG255400 Rh1CG272700 Rh1DG285000
rosa_wichuraiana	Rw1G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	4 cut(s)	284, 305, 313, 404
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	2 cut(s)	23, 318
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 499
AflII	CTTAAG	2 cut(s)	215, 329
AgsI	TTSAA	4 cut(s)	126, 155, 176, 514
AhdI	GACNNNNNGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	4 cut(s)	37, 94, 98, 214
AluI	AGCT	4 cut(s)	37, 94, 98, 214
Alw26I	GTCTC	2 cut(s)	112, 561
AlwI	GGATC	4 cut(s)	284, 305, 313, 404
AoxI	GGCC	2 cut(s)	389, 457
ApeKI	GCWGC	3 cut(s)	34, 464, 467
ApoI	RAATTY	1 cut(s)	61
AspLEI	GCGC	4 cut(s)	19, 25, 50, 433
AspS9I	GGNCC	4 cut(s)	132, 389, 458, 490
AsuC2I	CCSGG	1 cut(s)	461
AsuNHI	GCTAGC	1 cut(s)	94
AvaII	GGWCC	2 cut(s)	132, 490
AxyI	CCTNAGG	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	22
BbvI	GCAGC	3 cut(s)	46, 451, 454
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	112, 561
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	377, 453
BfoI	RGCGCY	2 cut(s)	20, 26
BfrI	CTTAAG	2 cut(s)	215, 329
BisI	GCNGC	4 cut(s)	35, 392, 465, 468
BlsI	GCNGC	4 cut(s)	36, 393, 466, 469
Bme1390I	CCNGG	2 cut(s)	399, 461
Bme18I	GGWCC	2 cut(s)	132, 490
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmgT120I	GGNCC	4 cut(s)	132, 389, 458, 490
BmiI	GGNNCC	3 cut(s)	24, 390, 492
BmrFI	CCNGG	2 cut(s)	399, 461
BmsI	GCATC	1 cut(s)	403
BmtI	GCTAGC	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	176
BsaHI	GRCGYC	2 cut(s)	23, 318
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 499
Bse118I	RCCGGY	2 cut(s)	19, 427
Bse21I	CCTNAGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 499
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	4 cut(s)	58, 85, 225, 356
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	3 cut(s)	46, 451, 454
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	391, 459
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	20, 428, 461
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	4 cut(s)	72, 398, 455, 499
BsmAI	GTCTC	2 cut(s)	112, 561
BsmFI	GGGAC	1 cut(s)	543
BsnI	GGCC	2 cut(s)	391, 459
Bso31I	GGTCTC	1 cut(s)	112
Bsp143I	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	2 cut(s)	391, 459
BspCNI	CTCAG	4 cut(s)	57, 84, 226, 357
BspLI	GGNNCC	3 cut(s)	24, 390, 492
BspMAI	CTGCAG	2 cut(s)	381, 457
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	4 cut(s)	284, 305, 313, 404
BspT107I	GGYRCC	1 cut(s)	22
BspTI	CTTAAG	2 cut(s)	215, 329
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	2 cut(s)	19, 427
BssAI	RCCGGY	2 cut(s)	19, 427
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
BssNI	GRCGYC	2 cut(s)	23, 318
BssT1I	CCWWGG	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	2 cut(s)	136, 164
Bst6I	CTCTTC	1 cut(s)	85
BstACI	GRCGYC	2 cut(s)	23, 318
BstAFI	CTTAAG	2 cut(s)	215, 329
BstC8I	GCNNGC	4 cut(s)	21, 96, 457, 479
BstDEI	CTNAG	4 cut(s)	44, 71, 234, 365
BstDSI	CCRYGG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	394
BstH2I	RGCGCY	2 cut(s)	20, 26
BstHHI	GCGC	4 cut(s)	19, 25, 50, 433
BstKTI	GATC	6 cut(s)	105, 279, 308, 313, 371, 412
BstMAI	GTCTC	2 cut(s)	112, 561
BstMBI	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 461
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	397, 459
BstSFI	CTRYAG	2 cut(s)	377, 453
BstV1I	GCAGC	3 cut(s)	46, 451, 454
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	391, 459
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	4 cut(s)	21, 96, 457, 479
CfoI	GCGC	4 cut(s)	19, 25, 50, 433
Cfr10I	RCCGGY	2 cut(s)	19, 427
Cfr13I	GGNCC	4 cut(s)	132, 389, 458, 490
CpoI	CGGWCCG	1 cut(s)	132
CseI	GACGC	2 cut(s)	326, 559
Csp6I	GTAC	1 cut(s)	247
CspCI	CAANNNNNGTGG	2 cut(s)	170, 205
CspI	CGGWCCG	1 cut(s)	132
CviAII	CATG	2 cut(s)	27, 295
CviJI	RGCY	7 cut(s)	37, 94, 98, 214, 391, 459, 464
CviKI_1	RGCY	7 cut(s)	37, 94, 98, 214, 391, 459, 464
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	4 cut(s)	44, 71, 234, 365
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	6 cut(s)	104, 278, 307, 312, 370, 411
DpnII	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
DriI	GACNNNNNGTC	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	2 cut(s)	132, 490
Eco57I	CTGAAG	1 cut(s)	567
Eco81I	CCTNAGG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	26
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	2 cut(s)	30, 298
FaiI	YATR	4 cut(s)	28, 241, 296, 601
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	2 cut(s)	26, 294
Fnu4HI	GCNGC	4 cut(s)	35, 392, 465, 468
FokI	GGATG	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	35, 392, 465, 468
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	4 cut(s)	18, 24, 49, 432
GluI	GCNGC	4 cut(s)	35, 392, 465, 468
HaeII	RGCGCY	2 cut(s)	20, 26
HaeIII	GGCC	2 cut(s)	391, 459
HapII	CCGG	3 cut(s)	20, 428, 461
HgaI	GACGC	2 cut(s)	326, 559
HhaI	GCGC	4 cut(s)	19, 25, 50, 433
Hin1I	GRCGYC	2 cut(s)	23, 318
Hin1II	CATG	2 cut(s)	30, 298
Hin6I	GCGC	4 cut(s)	17, 23, 48, 431
HinP1I	GCGC	4 cut(s)	17, 23, 48, 431
HincII	GTYRAC	2 cut(s)	292, 595
HindII	GTYRAC	2 cut(s)	292, 595
HinfI	GANTC	4 cut(s)	56, 172, 257, 514
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	3 cut(s)	20, 428, 461
Hpy166II	GTNNAC	2 cut(s)	292, 595
Hpy188I	TCNGA	7 cut(s)	132, 276, 310, 366, 414, 519, 586
Hpy188III	TCNNGA	7 cut(s)	155, 314, 372, 407, 443, 488, 511
Hpy8I	GTNNAC	2 cut(s)	292, 595
Hpy99I	CGWCG	2 cut(s)	320, 553
HpyAV	CCTTC	3 cut(s)	50, 132, 459
HpyCH4III	ACNGT	2 cut(s)	136, 164
HpyCH4V	TGCA	3 cut(s)	192, 379, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 461
HpyF3I	CTNAG	4 cut(s)	44, 71, 234, 365
Hsp92I	GRCGYC	2 cut(s)	23, 318
Hsp92II	CATG	2 cut(s)	30, 298
HspAI	GCGC	4 cut(s)	17, 23, 48, 431
KasI	GGCGCC	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
LmnI	GCTCC	3 cut(s)	42, 211, 265
Lsp1109I	GCAGC	3 cut(s)	46, 451, 454
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	3 cut(s)	110, 524, 535
MalI	GATC	6 cut(s)	104, 278, 307, 312, 370, 411
MboI	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
MboII	GAAGA	2 cut(s)	72, 431
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	3 cut(s)	61, 220, 269
Mly113I	GGCGCC	1 cut(s)	23
MnlI	CCTC	5 cut(s)	80, 151, 202, 504, 525
MreI	CGCCGGCG	1 cut(s)	19
MroNI	GCCGGC	1 cut(s)	19
MseI	TTAA	3 cut(s)	216, 330, 594
MspCI	CTTAAG	2 cut(s)	215, 329
MspI	CCGG	3 cut(s)	20, 428, 461
MspR9I	CCNGG	2 cut(s)	399, 461
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	31, 461
NaeI	GCCGGC	1 cut(s)	21
NarI	GGCGCC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
NgoMIV	GCCGGC	1 cut(s)	19
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	30, 298
NlaIV	GGNNCC	3 cut(s)	24, 390, 492
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	4 cut(s)	56, 172, 257, 514
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	36, 393, 466, 469
Ple19I	CGATCG	1 cut(s)	105
PluTI	GGCGCC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	24, 390, 492
PspPI	GGNCC	4 cut(s)	132, 389, 458, 490
PstI	CTGCAG	2 cut(s)	381, 457
PsuI	RGATCY	1 cut(s)	310
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
Rsr2I	CGGWCCG	1 cut(s)	132
RsrII	CGGWCCG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	216, 330, 594
SatI	GCNGC	4 cut(s)	35, 392, 465, 468
Sau3AI	GATC	6 cut(s)	102, 276, 305, 310, 368, 409
Sau96I	GGNCC	4 cut(s)	132, 389, 458, 490
ScrFI	CCNGG	2 cut(s)	399, 461
SetI	ASST	7 cut(s)	39, 72, 96, 100, 124, 216, 504
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	2 cut(s)	377, 453
SfoI	GGCGCC	1 cut(s)	24
SgrAI	CRCCGGYG	2 cut(s)	19, 427
SinI	GGWCC	2 cut(s)	132, 490
SmlI	CTYRAG	2 cut(s)	215, 329
SmoI	CTYRAG	2 cut(s)	215, 329
Sse9I	AATT	3 cut(s)	61, 220, 269
SsiI	CCGC	1 cut(s)	392
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	397, 459
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	136, 164
TaqI	TCGA	1 cut(s)	548
TasI	AATT	3 cut(s)	61, 220, 269
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	4 cut(s)	56, 172, 257, 514
Tru1I	TTAA	3 cut(s)	216, 330, 594
Tru9I	TTAA	3 cut(s)	216, 330, 594
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	3 cut(s)	34, 464, 467
TspDTI	ATGAA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	169
Vha464I	CTTAAG	2 cut(s)	215, 329
VpaK11BI	GGWCC	2 cut(s)	132, 490
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	1 cut(s)	61
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.