Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015966

Physical Location & Seq

Genomic Coordinates Forward (+)

16361596 .. 16363976

Gene Structure 2381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGGAACAGTGCCATGGAAGCAGCTTCTTCTCACTGCCTTGGAATCCAATGCCCACCTCAGGCACTCTTCCTACTTTCAACTCGCAACGATTGGTTCTAATGGCAGACCTTCAAATCGGACGGTGGTTTTCAGGGGATTTCAAGAGGACAGTGATAAGATTCAGATAAACACGGATTGCAGAACTCGTAAGATTGAGGAGCTTAAGCATTGTCCTTTTGCTGAGATATGTTGGTACTTCACTTACTCTTGGGAGCAATTTCGGATCAATGGAACAGTTGAAATTATTGATGGATCCAATTCTGATCCCATAAAACTTCAGATGGGACATGTTCTAGGCTCAAGACAAAATTTGGCTAGGTTGGAATGTTTAAGCTGGCAAAGAGAAAATTCTTGGTTTTCCGGTTCTTTGAGATCAAGACTGCAGTATTTGGGACCGAGTCCAGGTCTTCCTAATCTAAGTGAACAACCATCCAATGAAGTCTCTCTAGATCCTTCTACCGGCCCGGTTGGGGCATTTTGTTTGCTTGTTCTAGATCCACATCAGGTTGATTACTTGAATCTGAAGAGTAACCAGAGGCTGTCATTCACATCCACTCCAAGTCCCAATGGAGAAAAGAGCTGGACTTCAGAAAGGGTTAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046184 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

Pyridox_oxase_2

Protein Analysis

215

Amino Acids

24.35

Weight (kDa)

6.96

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridox_oxase_2	PF12766	5 - 96	1.4e-31	Pyridoxamine 5'-phosphate oxidase
PNPOx_N	PF01243	18 - 98	5.5e-09	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46580
fragaria_vesca	FvH4_7g16970
malus_domestica	MD01G1084300.v1.1
prunus_persica	Prupe.2G192000_v2.0.a1 Prupe.2G192000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360221
rosa_laevigata	RLG00000027819
rosa_multiflora	Rmu_ssc0000368.1_g000051
rosa_roxburghii	Rroxscaffold_4G00296280
rosa_rugosa	Rorug01G0276100
rosa_samantha	Rh1AG289800 Rh1BG255400 Rh1CG272700 Rh1DG285000
rosa_wichuraiana	Rw1G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	272, 288, 299, 301, 485, 530
AcsI	RAATTY	2 cut(s)	349, 388
AcuI	CTGAAG	3 cut(s)	302, 584, 612
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	60, 443, 500, 511
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	5 cut(s)	80, 114, 143, 281, 559
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	4 cut(s)	25, 202, 375, 621
AluI	AGCT	4 cut(s)	25, 202, 375, 621
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	6 cut(s)	272, 288, 299, 301, 485, 530
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	349, 388
AspS9I	GGNCC	2 cut(s)	434, 503
AsuC2I	CCSGG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	434
AxyI	CCTNAGG	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	3 cut(s)	284, 316, 478
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	4 cut(s)	335, 357, 488, 533
BfmI	CTRYAG	1 cut(s)	422
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	444, 506
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	434, 503
BmiI	GGNNCC	2 cut(s)	295, 435
BmrFI	CCNGG	2 cut(s)	444, 506
BpiI	GAAGAC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	14, 39
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 443, 500, 511
Bse118I	RCCGGY	1 cut(s)	500
Bse21I	CCTNAGG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	14, 39
BseGI	GGATG	2 cut(s)	470, 590
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	4 cut(s)	60, 443, 500, 511
BseMII	CTCAG	2 cut(s)	73, 213
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	504
BsiSI	CCGG	3 cut(s)	402, 501, 506
BslFI	GGGAC	3 cut(s)	339, 447, 588
BslI	CCNNNNNNNGG	4 cut(s)	60, 443, 500, 511
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	3 cut(s)	339, 447, 588
BsnI	GGCC	1 cut(s)	504
Bsp143I	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
Bsp19I	CCATGG	1 cut(s)	14
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	2 cut(s)	72, 214
BspLI	GGNNCC	2 cut(s)	295, 435
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	6 cut(s)	272, 288, 299, 301, 485, 530
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	14, 39
BssMI	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
BssT1I	CCWWGG	2 cut(s)	14, 39
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	4 cut(s)	10, 124, 152, 277
Bst6I	CTCTTC	2 cut(s)	73, 560
BstAFI	CTTAAG	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	3 cut(s)	59, 222, 458
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	470, 590
BstKTI	GATC	6 cut(s)	267, 296, 307, 416, 493, 538
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	442, 504
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	3 cut(s)	293, 490, 535
BstYI	RGATCY	3 cut(s)	293, 490, 535
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	504
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	470, 590
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	15, 33, 157
Cac8I	GCNNGC	1 cut(s)	377
CaiI	CAGNNNCTG	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	434, 503
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	15, 329
CviJI	RGCY	8 cut(s)	25, 202, 339, 356, 375, 504, 580, 621
CviKI_1	RGCY	8 cut(s)	25, 202, 339, 356, 375, 504, 580, 621
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	3 cut(s)	59, 222, 458
DpnI	GATC	6 cut(s)	266, 295, 306, 415, 492, 537
DpnII	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
Eam1104I	CTCTTC	2 cut(s)	73, 560
EarI	CTCTTC	2 cut(s)	73, 560
Eco130I	CCWWGG	2 cut(s)	14, 39
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	3 cut(s)	302, 584, 612
Eco81I	CCTNAGG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	14, 39
ErhI	CCWWGG	2 cut(s)	14, 39
FaeI	CATG	2 cut(s)	18, 332
FaiI	YATR	4 cut(s)	16, 229, 311, 330
FaqI	GGGAC	3 cut(s)	339, 447, 588
FatI	CATG	2 cut(s)	14, 328
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	2 cut(s)	457, 577
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	4 cut(s)	335, 357, 488, 533
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	3 cut(s)	402, 501, 506
Hin1II	CATG	2 cut(s)	18, 332
HinfI	GANTC	4 cut(s)	44, 160, 439, 559
HpaII	CCGG	3 cut(s)	402, 501, 506
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	7 cut(s)	120, 165, 264, 304, 321, 564, 631
Hpy188III	TCNNGA	5 cut(s)	143, 342, 417, 488, 533
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	2 cut(s)	120, 504
HpyCH4III	ACNGT	4 cut(s)	10, 124, 152, 277
HpyCH4V	TGCA	2 cut(s)	180, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	3 cut(s)	59, 222, 458
Hsp92II	CATG	2 cut(s)	18, 332
Kzo9I	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
LmnI	GCTCC	2 cut(s)	199, 253
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	4 cut(s)	335, 357, 488, 533
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	6 cut(s)	266, 295, 306, 415, 492, 537
MboI	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
MboII	GAAGA	4 cut(s)	20, 60, 440, 577
MflI	RGATCY	3 cut(s)	293, 490, 535
MluCI	AATT	5 cut(s)	257, 282, 298, 349, 388
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	68, 139, 190, 570
MseI	TTAA	4 cut(s)	204, 371, 639, 646
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	402, 501, 506
MspR9I	CCNGG	2 cut(s)	444, 506
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	506
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
NlaIII	CATG	2 cut(s)	18, 332
NlaIV	GGNNCC	2 cut(s)	295, 435
NspI	RCATGY	1 cut(s)	332
PciI	ACATGT	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	44, 160, 559
PflFI	GACNNNGTC	1 cut(s)	438
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PscI	ACATGT	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	295, 435
PspPI	GGNCC	2 cut(s)	434, 503
PstI	CTGCAG	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	3 cut(s)	293, 490, 535
PsyI	GACNNNGTC	1 cut(s)	438
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	4 cut(s)	204, 371, 639, 646
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	6 cut(s)	264, 293, 304, 413, 490, 535
Sau96I	GGNCC	2 cut(s)	434, 503
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	444, 506
SetI	ASST	9 cut(s)	27, 60, 112, 204, 362, 377, 448, 549, 623
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	203, 340
SmoI	CTYRAG	2 cut(s)	203, 340
Sse9I	AATT	5 cut(s)	257, 282, 298, 349, 388
SspMI	CTAG	4 cut(s)	335, 357, 488, 533
StyD4I	CCNGG	2 cut(s)	442, 504
StyI	CCWWGG	2 cut(s)	14, 39
TaaI	ACNGT	4 cut(s)	10, 124, 152, 277
TaqII	GACCGA	1 cut(s)	451
TasI	AATT	5 cut(s)	257, 282, 298, 349, 388
TfiI	GAWTC	3 cut(s)	44, 160, 559
Tru1I	TTAA	4 cut(s)	204, 371, 639, 646
Tru9I	TTAA	4 cut(s)	204, 371, 639, 646
TscAI	CASTG	3 cut(s)	15, 40, 157
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	3 cut(s)	15, 40, 157
Tth111I	GACNNNGTC	1 cut(s)	438
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	349, 388
XbaI	TCTAGA	2 cut(s)	487, 532
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	4 cut(s)	335, 357, 488, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.