Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015966

Physical Location & Seq

Genomic Coordinates Reverse (-)

14533085 .. 14535567

Gene Structure 2483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAACAGTAACAGCTCCAGCGCCATGGAAGCAGCTTCTTCTCAGTGCCTTGGAAGCCAACGCCCACCTCAGACACTCTTCCTACTTTCAGCTCGCAACGATCGGTTCTAATGGGAGACCTTCAAATCGGACTGTGGTTTTCAGGGGATTTCAAGAGGACAGTGATAAGATTCAGATAAACACTGATTGCAGAACCCGTAAGATTGAGGAGCTTAAACATTGTCCTTTTGCTGAGATATGTTGGTACTTCACCGACTCTTGGGAGCAATTTCGGATCAATGGAACAGTTGATATTATTGATGGATCCAATTCTGATCCCATGAAACTTCAGCAAAGAGAAAAATCTTGGTTTGCCGGTTCTTTGAGATCAAGACTGCAGTATTTGGGACCAAGTCCAGGTCTCCCCAATCCAAGTGAACAACCAGCCAATGAAGTCTCTCTAGATCCTTCTACAGGCCCAGTTGGGGCATTTTGTTTGCTTGTTCTAGATCCACATCAGGTTGATTACTTGAATCTGAAGAGTAACCAGAGGCTGTCATTCACATCCACTCCAAGTTCCGATGGAGAAAAGAGCTGGACTTCAGAAAAGGTTAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046184 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

Pyridox_oxase_2

Protein Analysis

201

Amino Acids

22.39

Weight (kDa)

6.08

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridox_oxase_2	PF12766	8 - 100	1.6e-32	Pyridoxamine 5'-phosphate oxidase
PNPOx_N	PF01243	20 - 119	1.7e-09	Pyridoxamine 5'-phosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46580
fragaria_vesca	FvH4_7g16970
malus_domestica	MD01G1084300.v1.1
prunus_persica	Prupe.2G192000_v2.0.a1 Prupe.2G192000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360221
rosa_laevigata	RLG00000027819
rosa_multiflora	Rmu_ssc0000368.1_g000051
rosa_roxburghii	Rroxscaffold_4G00296280
rosa_rugosa	Rorug01G0276100
rosa_samantha	Rh1AG289800 Rh1BG255400 Rh1CG272700 Rh1DG285000
rosa_wichuraiana	Rw1G025710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	284, 300, 311, 313, 440, 485
AcuI	CTGAAG	3 cut(s)	314, 539, 567
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	261, 398, 455, 466
AgsI	TTSAA	3 cut(s)	126, 155, 514
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	5 cut(s)	17, 37, 94, 214, 576
AluI	AGCT	5 cut(s)	17, 37, 94, 214, 576
Alw26I	GTCTC	3 cut(s)	112, 407, 442
AlwI	GGATC	6 cut(s)	284, 300, 311, 313, 440, 485
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	389, 458
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	296, 557
BciT130I	CCWGG	1 cut(s)	399
BcoDI	GTCTC	3 cut(s)	112, 407, 442
BfaI	CTAG	2 cut(s)	443, 488
BfmI	CTRYAG	2 cut(s)	377, 453
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	389, 458
BmiI	GGNNCC	2 cut(s)	307, 390
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	2 cut(s)	112, 407
BsaJI	CCNNGG	2 cut(s)	26, 51
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	4 cut(s)	261, 398, 455, 466
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	461
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	26, 51
BseGI	GGATG	1 cut(s)	545
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	4 cut(s)	261, 398, 455, 466
BseMII	CTCAG	3 cut(s)	58, 85, 225
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	4 cut(s)	261, 398, 455, 466
BsmAI	GTCTC	3 cut(s)	112, 407, 442
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	459
Bso31I	GGTCTC	2 cut(s)	112, 407
Bsp143I	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
Bsp19I	CCATGG	1 cut(s)	26
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	3 cut(s)	57, 84, 226
BspLI	GGNNCC	2 cut(s)	307, 390
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	6 cut(s)	284, 300, 311, 313, 440, 485
BspTNI	GGTCTC	2 cut(s)	112, 407
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	26, 51
BssMI	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
BssT1I	CCWWGG	2 cut(s)	26, 51
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	4 cut(s)	10, 136, 164, 289
Bst6I	CTCTTC	2 cut(s)	85, 515
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	44, 71, 234
BstDSI	CCRYGG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	545
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	7 cut(s)	105, 279, 308, 319, 371, 448, 493
BstMAI	GTCTC	3 cut(s)	112, 407, 442
BstMBI	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 56
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	377, 453
BstV1I	GCAGC	1 cut(s)	46
BstX2I	RGATCY	3 cut(s)	305, 445, 490
BstXI	CCANNNNNNTGG	1 cut(s)	27
BstYI	RGATCY	3 cut(s)	305, 445, 490
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	545
BtsIMutI	CAGTG	3 cut(s)	52, 169, 183
Cac8I	GCNNGC	1 cut(s)	96
CaiI	CAGNNNCTG	1 cut(s)	535
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	389, 458
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	27, 322
CviJI	RGCY	9 cut(s)	17, 37, 59, 94, 214, 428, 459, 535, 576
CviKI_1	RGCY	9 cut(s)	17, 37, 59, 94, 214, 428, 459, 535, 576
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	44, 71, 234
DpnI	GATC	7 cut(s)	104, 278, 307, 318, 370, 447, 492
DpnII	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
Eam1104I	CTCTTC	2 cut(s)	85, 515
EarI	CTCTTC	2 cut(s)	85, 515
Eco130I	CCWWGG	2 cut(s)	26, 51
Eco31I	GGTCTC	2 cut(s)	112, 407
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	3 cut(s)	314, 539, 567
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	26, 51
ErhI	CCWWGG	2 cut(s)	26, 51
FaeI	CATG	2 cut(s)	30, 325
FaiI	YATR	3 cut(s)	28, 241, 323
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	2 cut(s)	26, 321
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	443, 488
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	30, 325
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	3 cut(s)	172, 257, 514
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	8 cut(s)	74, 132, 177, 276, 316, 519, 562, 586
Hpy188III	TCNNGA	4 cut(s)	155, 372, 443, 488
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	132, 459
HpyCH4III	ACNGT	4 cut(s)	10, 136, 164, 289
HpyCH4V	TGCA	2 cut(s)	192, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 56
HpyF3I	CTNAG	3 cut(s)	44, 71, 234
Hsp92II	CATG	2 cut(s)	30, 325
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
LmnI	GCTCC	3 cut(s)	22, 211, 265
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	443, 488
MaeIII	GTNAC	2 cut(s)	10, 524
MalI	GATC	7 cut(s)	104, 278, 307, 318, 370, 447, 492
MboI	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
MboII	GAAGA	3 cut(s)	32, 72, 532
MflI	RGATCY	3 cut(s)	305, 445, 490
MluCI	AATT	2 cut(s)	269, 310
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	80, 151, 202, 525
MseI	TTAA	3 cut(s)	216, 594, 601
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	31, 56
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
NlaIII	CATG	2 cut(s)	30, 325
NlaIV	GGNNCC	2 cut(s)	307, 390
PfeI	GAWTC	2 cut(s)	172, 514
PflFI	GACNNNGTC	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	36
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	307, 390
PspPI	GGNCC	2 cut(s)	389, 458
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	3 cut(s)	305, 445, 490
PsyI	GACNNNGTC	1 cut(s)	393
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	3 cut(s)	216, 594, 601
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	7 cut(s)	102, 276, 305, 316, 368, 445, 490
Sau96I	GGNCC	2 cut(s)	389, 458
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	399
SfcI	CTRYAG	2 cut(s)	377, 453
SinI	GGWCC	1 cut(s)	389
Sse9I	AATT	2 cut(s)	269, 310
SspMI	CTAG	2 cut(s)	443, 488
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	2 cut(s)	26, 51
TaaI	ACNGT	4 cut(s)	10, 136, 164, 289
TasI	AATT	2 cut(s)	269, 310
TfiI	GAWTC	2 cut(s)	172, 514
Tru1I	TTAA	3 cut(s)	216, 594, 601
Tru9I	TTAA	3 cut(s)	216, 594, 601
TscAI	CASTG	3 cut(s)	52, 169, 190
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	338, 447
TspRI	CASTG	3 cut(s)	52, 169, 190
Tth111I	GACNNNGTC	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	453
XbaI	TCTAGA	2 cut(s)	442, 487
XspI	CTAG	2 cut(s)	443, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.