Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019137

Physical Location & Seq

Genomic Coordinates Forward (+)

19307714 .. 19309071

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGAAGAGGGAGAAGTTCATCGTCTTCTTCAATAGAGAGTAGCAGCAAGAGCAACCCATTCGGTGCTTCGTCAAGTACTCGAAACCTAAGCACGGACCTGAGACTCGGACTCAGCTTCGGGACATCCTCAGGGACTCAATATTTCAACGGTGGCTATGGGTACTCCGTTGCAGCTCCGGCGGTAGAGGATGCGGAATATGTGGCGGCTGTGGAGGAGGAAGAAGAGAATGAGTGTAACAGTGTAGGGAGCTTTTACGTGAAAGTGAACATGGAAGGAGTTCCAATTGGAAGAAAGATCGATCTAATGTCTCTTAATGGCTACCGCGACTTGATCAGAACCCTTGATTTCATGTTCAACGCATCCATTCTCTGGGCTGAAGAAGAAGACATGTGCAATGAGAAGAGTCACGTGCTAACGTACGCAGATAAGGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTGTCTACTGTGAGAAGACTGAAGATTTCAAGAGCTAATTACCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

175

Amino Acids

19.44

Weight (kDa)

4.73

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	73 - 157	2.3e-22	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46990 AT2G46990 AT3G62100 AT3G62100
malus_domestica	MD00G1016500.v1.1
prunus_persica	Prupe.3G001800_v2.0.a1
pyrus_communis	pycom09g19890 pycom17g28250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	482
AccII	CGCG	1 cut(s)	327
AciI	CCGC	4 cut(s)	182, 194, 206, 325
AcuI	CTGAAG	2 cut(s)	399, 518
AcvI	CACGTG	1 cut(s)	412
AfaI	GTAC	3 cut(s)	79, 164, 422
AfiI	CCNNNNNNNGG	2 cut(s)	94, 372
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	33, 148, 358, 507
AluBI	AGCT	4 cut(s)	117, 176, 252, 512
AluI	AGCT	4 cut(s)	117, 176, 252, 512
Alw26I	GTCTC	2 cut(s)	97, 315
ApeKI	GCWGC	2 cut(s)	45, 173
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	130
BbrPI	CACGTG	1 cut(s)	412
BbsI	GAAGAC	3 cut(s)	18, 393, 499
BbvI	GCAGC	2 cut(s)	57, 185
BccI	CCATC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	97, 315
BisI	GCNGC	3 cut(s)	46, 174, 207
BlsI	GCNGC	3 cut(s)	47, 175, 208
BmcAI	AGTACT	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmsI	GCATC	2 cut(s)	181, 371
BpiI	GAAGAC	3 cut(s)	18, 393, 499
Bpu10I	CCTNAGC	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	300
BsaAI	YACGTR	2 cut(s)	259, 412
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 372
Bse1I	ACTGG	1 cut(s)	446
Bse21I	CCTNAGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	403
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	4 cut(s)	125, 196, 362, 450
BseLI	CCNNNNNNNGG	2 cut(s)	94, 372
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	92, 127, 144
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	57, 185
Bsh1236I	CGCG	1 cut(s)	327
BshVI	ATCGAT	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	179
BsiWI	CGTACG	1 cut(s)	420
BslFI	GGGAC	2 cut(s)	136, 148
BslI	CCNNNNNNNGG	2 cut(s)	94, 372
BsmAI	GTCTC	2 cut(s)	97, 315
BsmFI	GGGAC	2 cut(s)	136, 148
Bsp143I	GATC	3 cut(s)	297, 301, 333
BspACI	CCGC	4 cut(s)	182, 194, 206, 325
BspCNI	CTCAG	3 cut(s)	93, 126, 143
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	3 cut(s)	297, 301, 333
BssT1I	CCWWGG	1 cut(s)	464
Bst4CI	ACNGT	3 cut(s)	152, 242, 487
Bst6I	CTCTTC	2 cut(s)	219, 398
BstBAI	YACGTR	2 cut(s)	259, 412
BstDEI	CTNAG	4 cut(s)	89, 101, 113, 130
BstF5I	GGATG	4 cut(s)	125, 196, 362, 450
BstFNI	CGCG	1 cut(s)	327
BstKTI	GATC	3 cut(s)	300, 304, 336
BstMAI	GTCTC	2 cut(s)	97, 315
BstMBI	GATC	3 cut(s)	297, 301, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 179
BstNSI	RCATGY	1 cut(s)	394
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	57, 185
BstV2I	GAAGAC	3 cut(s)	18, 393, 499
Bsu15I	ATCGAT	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	4 cut(s)	125, 196, 362, 450
BtsIMutI	CAGTG	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	3 cut(s)	78, 163, 421
CviAII	CATG	3 cut(s)	271, 352, 391
CviJI	RGCY	8 cut(s)	117, 156, 176, 209, 252, 321, 377, 512
CviKI_1	RGCY	8 cut(s)	117, 156, 176, 209, 252, 321, 377, 512
CviQI	GTAC	3 cut(s)	78, 163, 421
DdeI	CTNAG	4 cut(s)	89, 101, 113, 130
DpnI	GATC	3 cut(s)	299, 303, 335
DpnII	GATC	3 cut(s)	297, 301, 333
Eam1104I	CTCTTC	2 cut(s)	219, 398
EarI	CTCTTC	2 cut(s)	219, 398
Eco130I	CCWWGG	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	399, 518
Eco72I	CACGTG	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	3 cut(s)	274, 355, 394
FaiI	YATR	5 cut(s)	159, 201, 272, 353, 392
FaqI	GGGAC	2 cut(s)	136, 148
FatI	CATG	3 cut(s)	270, 351, 390
FbaI	TGATCA	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	3 cut(s)	46, 174, 207
FokI	GGATG	4 cut(s)	112, 203, 349, 457
Fsp4HI	GCNGC	3 cut(s)	46, 174, 207
GluI	GCNGC	3 cut(s)	46, 174, 207
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	3 cut(s)	274, 355, 394
HinfI	GANTC	4 cut(s)	105, 111, 136, 406
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	268, 483
Hpy188I	TCNGA	2 cut(s)	110, 338
Hpy188III	TCNNGA	2 cut(s)	121, 507
Hpy8I	GTNNAC	2 cut(s)	268, 483
HpyAV	CCTTC	2 cut(s)	269, 428
HpyCH4III	ACNGT	3 cut(s)	152, 242, 487
HpyCH4IV	ACGT	3 cut(s)	258, 411, 419
HpyCH4V	TGCA	2 cut(s)	173, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 179
HpyF3I	CTNAG	4 cut(s)	89, 101, 113, 130
HpySE526I	ACGT	3 cut(s)	258, 411, 419
Hsp92II	CATG	3 cut(s)	274, 355, 394
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	297, 301, 333
LmnI	GCTCC	2 cut(s)	181, 249
LpnPI	CCDG	5 cut(s)	113, 117, 192, 358, 427
Lsp1109I	GCAGC	2 cut(s)	57, 185
LweI	GCATC	2 cut(s)	181, 371
MaeII	ACGT	3 cut(s)	258, 411, 419
MaeIII	GTNAC	3 cut(s)	236, 407, 437
MalI	GATC	3 cut(s)	299, 303, 335
MboI	GATC	3 cut(s)	297, 301, 333
MfeI	CAATTG	1 cut(s)	285
MluCI	AATT	2 cut(s)	285, 514
MlyI	GAGTC	4 cut(s)	99, 105, 130, 415
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	4 cut(s)	139, 181, 208, 211
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	285
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	51, 179
NdeII	GATC	3 cut(s)	297, 301, 333
NlaIII	CATG	3 cut(s)	274, 355, 394
NmuCI	GTSAC	2 cut(s)	407, 437
NspI	RCATGY	1 cut(s)	394
PciI	ACATGT	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	279
Pfl23II	CGTACG	1 cut(s)	420
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	47, 175, 208
PleI	GAGTC	4 cut(s)	99, 105, 130, 414
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	4 cut(s)	99, 105, 130, 414
Ppu21I	YACGTR	2 cut(s)	259, 412
PscI	ACATGT	1 cut(s)	390
PspCI	CACGTG	1 cut(s)	412
PspLI	CGTACG	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	97
RsaI	GTAC	3 cut(s)	79, 164, 422
RsaNI	GTAC	3 cut(s)	78, 163, 421
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	46, 174, 207
Sau3AI	GATC	3 cut(s)	297, 301, 333
Sau96I	GGNCC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	79
SchI	GAGTC	4 cut(s)	99, 105, 130, 415
SfaNI	GCATC	2 cut(s)	181, 371
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	285, 514
SsiI	CCGC	4 cut(s)	182, 194, 206, 325
SspI	AATATT	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	3 cut(s)	152, 242, 487
TaiI	ACGT	3 cut(s)	261, 414, 422
TaqI	TCGA	2 cut(s)	82, 300
TasI	AATT	2 cut(s)	285, 514
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	407, 437
TseI	GCWGC	2 cut(s)	45, 173
Tsp45I	GTSAC	2 cut(s)	407, 437
TspDTI	ATGAA	2 cut(s)	9, 340
TspGWI	ACGGA	2 cut(s)	110, 157
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	97
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.