Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0019137

Physical Location & Seq

Genomic Coordinates Reverse (-)

2386797 .. 2387359

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1016500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAATGCAGCGACAGCAGATGATGAACACAATGATGTTGAGAGCAGCAGCAGCAGCAGGAACACAAGAAGAAGACTGTATGTCAAGGTTTACATGGAGGGGCATGCCATTGGAAGAAAGCTGGATCTATTAGCCCATCATGGTTTTCATGACATGATACGGACACTCGAACACATGTTCAACACCAACATTCTCTGGGGAGATGATGTGGACAGAGTGCACTCTGGTCATAACGATCTTCATGTTTTGACATATGAGGACGAGGAAGGGGATTGGCTCATAGTCGGTGACGTTCCTTGGGAGATGTTCTTGTCCGCAGCGAAAAGATTGAAGATCACAAGGACTTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

5.63

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	4 - 114	2.9e-27	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46990 AT2G46990 AT3G62100 AT3G62100
malus_domestica	MD00G1016500.v1.1
prunus_persica	Prupe.3G001800_v2.0.a1
pyrus_communis	pycom09g19890 pycom17g28250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	1 cut(s)	132
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	181, 331
AhdI	GACNNNNNGTC	1 cut(s)	80
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	222
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	6 cut(s)	8, 45, 48, 51, 54, 317
AsuHPI	GGTGA	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	6 cut(s)	20, 57, 60, 63, 66, 329
BccI	CCATC	1 cut(s)	144
BisI	GCNGC	6 cut(s)	9, 46, 49, 52, 55, 318
BlsI	GCNGC	6 cut(s)	10, 47, 50, 53, 56, 319
BmeRI	GACNNNNNGTC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
BseDI	CCNNGG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	6 cut(s)	20, 57, 60, 63, 66, 329
BsiHKAI	GWGCWC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	124, 235, 333
BspACI	CCGC	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	148
BspPI	GGATC	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	3 cut(s)	124, 235, 333
BssT1I	CCWWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	127, 238, 336
BstMBI	GATC	3 cut(s)	124, 235, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 51, 54
BstNSI	RCATGY	2 cut(s)	107, 178
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	6 cut(s)	20, 57, 60, 63, 66, 329
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	148
CviAII	CATG	8 cut(s)	94, 104, 140, 149, 154, 175, 242, 351
CviJI	RGCY	3 cut(s)	121, 134, 277
CviKI_1	RGCY	3 cut(s)	121, 134, 277
DpnI	GATC	3 cut(s)	126, 237, 335
DpnII	GATC	3 cut(s)	124, 235, 333
DriI	GACNNNNNGTC	1 cut(s)	80
Eam1105I	GACNNNNNGTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	8 cut(s)	97, 107, 143, 152, 157, 178, 245, 354
FatI	CATG	8 cut(s)	93, 103, 139, 148, 153, 174, 241, 350
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	6 cut(s)	9, 46, 49, 52, 55, 318
Fsp4HI	GCNGC	6 cut(s)	9, 46, 49, 52, 55, 318
GluI	GCNGC	6 cut(s)	9, 46, 49, 52, 55, 318
Hin1II	CATG	8 cut(s)	97, 107, 143, 152, 157, 178, 245, 354
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	3 cut(s)	91, 211, 220
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	3 cut(s)	91, 211, 220
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	8, 220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 51, 54
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	8 cut(s)	97, 107, 143, 152, 157, 178, 245, 354
Kzo9I	GATC	3 cut(s)	124, 235, 333
LpnPI	CCDG	4 cut(s)	43, 107, 181, 210
Lsp1109I	GCAGC	6 cut(s)	20, 57, 60, 63, 66, 329
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	126, 237, 335
MboI	GATC	3 cut(s)	124, 235, 333
MboII	GAAGA	5 cut(s)	81, 84, 126, 230, 343
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	91, 250, 256
MslI	CAYNNNNRTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	14, 51, 54
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	3 cut(s)	124, 235, 333
NlaIII	CATG	8 cut(s)	97, 107, 143, 152, 157, 178, 245, 354
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	2 cut(s)	107, 178
PaeI	GCATGC	1 cut(s)	107
PagI	TCATGA	1 cut(s)	148
PciI	ACATGT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	6 cut(s)	10, 47, 50, 53, 56, 319
PscI	ACATGT	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	33
SatI	GCNGC	6 cut(s)	9, 46, 49, 52, 55, 318
Sau3AI	GATC	3 cut(s)	124, 235, 333
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	3 cut(s)	90, 123, 294
SmiMI	CAYNNNNRTG	1 cut(s)	33
SphI	GCATGC	1 cut(s)	107
SsiI	CCGC	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	6 cut(s)	8, 45, 48, 51, 54, 317
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	17, 39, 137, 230
TspGWI	ACGGA	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	218
XceI	RCATGY	2 cut(s)	107, 178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.