Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019137

Physical Location & Seq

Genomic Coordinates Forward (+)

22995686 .. 22996809

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGAAGAGGGAGAAGCTCATCGTCTTCATCGATAGAGAGCAGCTGCAAAAGCAACCCATTTGGTGTGTCTTCGAGTAATACTCGGAACCTAAGCACGGACCTGAGACTCGGGCTCAGCTTCGGATCATCTTCCGGACAATATTACAACGGTGGAGATAACCATGAATATGATGGAGTCGGTGCGGCAGAGGAAATGATGATCATGGAAGAAGAAGAGCAAAACGAGTGTAATAGTGTCGGAAGCTTCTACGTGAAAGTGAACATGGAAGGAGTTCCTATTGGGAGAAAGATCGATCTTTTATCTCTTAATGGATATCATGATTTGATCACAACTCTCGACTACATGTTCAATGCTTCAATCCTTTGGGCTGAAGAAGAAGATATGTGTAGTGAGAAGAGTCACGTGCTAACGTACGCAGACAAAGAAGGTGACTGGATGATGGTTGGAGATGTTCCTTGGGAGATGTTCTTGTCTAGCGTGAGAAGACTAAAGATCTCAAGAGCTTATCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

172

Amino Acids

19.24

Weight (kDa)

4.66

Isoelectric Point (pI)

63.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	71 - 155	3.8e-22	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46990 AT2G46990 AT3G62100 AT3G62100
malus_domestica	MD00G1016500.v1.1
prunus_persica	Prupe.3G001800_v2.0.a1
pyrus_communis	pycom09g19890 pycom17g28250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	134
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	393
AcvI	CACGTG	1 cut(s)	406
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	352, 360
AluBI	AGCT	5 cut(s)	18, 45, 120, 246, 506
AluI	AGCT	5 cut(s)	18, 45, 120, 246, 506
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	42, 45
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	117
BbrPI	CACGTG	1 cut(s)	406
BbsI	GAAGAC	3 cut(s)	18, 63, 493
BbvI	GCAGC	2 cut(s)	32, 54
BccI	CCATC	2 cut(s)	167, 436
BclI	TGATCA	2 cut(s)	201, 327
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	477
BglII	AGATCT	1 cut(s)	495
BisI	GCNGC	3 cut(s)	43, 46, 186
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	3 cut(s)	44, 47, 187
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	89
BpiI	GAAGAC	3 cut(s)	18, 63, 493
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	484
Bsa29I	ATCGAT	2 cut(s)	32, 294
BsaAI	YACGTR	2 cut(s)	253, 406
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	440
BseAI	TCCGGA	1 cut(s)	134
BseCI	ATCGAT	2 cut(s)	32, 294
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	95, 130
BseNI	ACTGG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	32, 54
BshVI	ATCGAT	2 cut(s)	32, 294
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	135
BsiWI	CGTACG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	96, 129
BspDI	ATCGAT	2 cut(s)	32, 294
BspEI	TCCGGA	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	133
BspQI	GCTCTTC	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
BssT1I	CCWWGG	1 cut(s)	458
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	2 cut(s)	210, 392
BstBAI	YACGTR	2 cut(s)	253, 406
BstDEI	CTNAG	3 cut(s)	92, 104, 116
BstF5I	GGATG	1 cut(s)	444
BstKTI	GATC	6 cut(s)	128, 204, 294, 298, 330, 498
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	32, 54
BstV2I	GAAGAC	3 cut(s)	18, 63, 493
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
Bsu15I	ATCGAT	2 cut(s)	32, 294
BsuTUI	ATCGAT	2 cut(s)	32, 294
BtsCI	GGATG	1 cut(s)	444
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	100
ClaI	ATCGAT	2 cut(s)	32, 294
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	5 cut(s)	164, 205, 265, 320, 346
CviJI	RGCY	7 cut(s)	18, 45, 115, 120, 246, 371, 506
CviKI_1	RGCY	7 cut(s)	18, 45, 115, 120, 246, 371, 506
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	92, 104, 116
DpnI	GATC	6 cut(s)	127, 203, 293, 297, 329, 497
DpnII	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
Eam1104I	CTCTTC	2 cut(s)	210, 392
EarI	CTCTTC	2 cut(s)	210, 392
Eco130I	CCWWGG	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	393
Eco72I	CACGTG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	5 cut(s)	167, 208, 268, 323, 349
FaiI	YATR	7 cut(s)	165, 171, 206, 266, 321, 347, 386
FatI	CATG	5 cut(s)	163, 204, 264, 319, 345
FbaI	TGATCA	2 cut(s)	201, 327
Fnu4HI	GCNGC	3 cut(s)	43, 46, 186
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	43, 46, 186
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	3 cut(s)	43, 46, 186
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	5 cut(s)	167, 208, 268, 323, 349
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	3 cut(s)	108, 177, 400
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	87, 125, 242
Hpy188III	TCNNGA	4 cut(s)	135, 320, 338, 501
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	263, 422
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	3 cut(s)	252, 405, 413
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	3 cut(s)	92, 104, 116
HpySE526I	ACGT	3 cut(s)	252, 405, 413
Hsp92II	CATG	5 cut(s)	167, 208, 268, 323, 349
Kpn2I	TCCGGA	1 cut(s)	134
Ksp22I	TGATCA	2 cut(s)	201, 327
Kzo9I	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
LguI	GCTCTTC	1 cut(s)	210
LpnPI	CCDG	3 cut(s)	116, 148, 421
Lsp1109I	GCAGC	2 cut(s)	32, 54
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	3 cut(s)	252, 405, 413
MaeIII	GTNAC	2 cut(s)	401, 431
MalI	GATC	6 cut(s)	127, 203, 293, 297, 329, 497
MboI	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	117
MlyI	GAGTC	3 cut(s)	102, 186, 409
MmeI	TCCRAC	2 cut(s)	220, 427
MnlI	CCTC	1 cut(s)	184
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
NlaIII	CATG	5 cut(s)	167, 208, 268, 323, 349
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	2 cut(s)	401, 431
NspI	RCATGY	1 cut(s)	349
PagI	TCATGA	1 cut(s)	319
PciI	ACATGT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	273
Pfl23II	CGTACG	1 cut(s)	414
PkrI	GCNGC	3 cut(s)	44, 47, 187
PleI	GAGTC	3 cut(s)	102, 185, 408
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
PpsI	GAGTC	3 cut(s)	102, 185, 408
Ppu21I	YACGTR	2 cut(s)	253, 406
PscI	ACATGT	1 cut(s)	345
PspCI	CACGTG	1 cut(s)	406
PspLI	CGTACG	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	43, 46, 186
Sau3AI	GATC	6 cut(s)	125, 201, 291, 295, 327, 495
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	3 cut(s)	102, 186, 409
SduI	GDGCHC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
SsiI	CCGC	1 cut(s)	185
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	3 cut(s)	255, 408, 416
TaqI	TCGA	4 cut(s)	32, 74, 294, 339
TauI	GCSGC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	401, 431
TseI	GCWGC	2 cut(s)	42, 45
Tsp45I	GTSAC	2 cut(s)	401, 431
TspDTI	ATGAA	2 cut(s)	18, 180
TspGWI	ACGGA	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.