Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0019137

Physical Location & Seq

Genomic Coordinates Forward (+)

141629 .. 143336

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGCAGAGGCAGAGCTCCTACAAGTAGTACTAGTTGTTCTTCATCTATTGACAGTAGCAACCACCCAGGCCCAGCTCTCTCAACAACGCCATCATCATCTTCCCAAACCCTCCCATCTTCTTTCTCACACTCACAGTTCAGACAGTTAAAGAGAGATCTTAGCACAGATCTCAGGCTTGGGCTTAGCTTATCACCCTCTGCCTCTCACTCTCAACAACACAACCCTTCTGTTGCAAGGGGGTCATCGTCGGATTTGGCGTATTCAAACCAGCCGAAGGAGGAGGCGATGAATAATTATGCAGCAGCTGCAGCAGATGAAGGCAGCAATGATAATGATGATCACACCACATCCACCTTCTATGTGAAGGTTTACATGGCAGGCCATGCTATTGGCAGGAAGTTGGATCTATTAGCGCATGATGGTTTTCATGACTTGATACGAACACTGGAACATATGTTCAACACCAACATTCTCTGGGGAGATGAGGTGGATAGAGTGCACTCTGAGTCTGGTCGTGATGTTCATGTTTTGACATATGAAGACGAGGAAGGGGATTGGCTGATGGTGGGGGATGTTCCTTGGGAGATGTTCTTGTCCGCAGCGAAAAGATTGAAGATCACAAGGACTTTTCCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

214

Amino Acids

23.36

Weight (kDa)

5.58

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46990 AT2G46990 AT3G62100 AT3G62100
malus_domestica	MD00G1016500.v1.1
prunus_persica	Prupe.3G001800_v2.0.a1
pyrus_communis	pycom09g19890 pycom17g28250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	600
AclWI	GGATC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	267, 463, 616
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	67
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	4 cut(s)	17, 77, 189, 308
AluI	AGCT	4 cut(s)	17, 77, 189, 308
Alw21I	GWGCWC	2 cut(s)	19, 504
Alw44I	GTGCAC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	414
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	70, 382
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	6 cut(s)	302, 305, 308, 311, 324, 602
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	549
Bbv12I	GWGCWC	2 cut(s)	19, 504
BbvI	GCAGC	6 cut(s)	295, 314, 317, 323, 336, 614
BccI	CCATC	4 cut(s)	100, 124, 416, 559
BciT130I	CCWGG	1 cut(s)	69
BclI	TGATCA	1 cut(s)	340
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	2 cut(s)	157, 169
BisI	GCNGC	6 cut(s)	303, 306, 309, 312, 325, 603
BlpI	GCTNAGC	1 cut(s)	185
BlsI	GCNGC	6 cut(s)	304, 307, 310, 313, 326, 604
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	67, 581
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	67, 581
BseGI	GGATG	2 cut(s)	350, 580
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	187, 498
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	6 cut(s)	295, 314, 317, 323, 336, 614
BseYI	CCCAGC	1 cut(s)	73
BshFI	GGCC	2 cut(s)	72, 384
BsiHKAI	GWGCWC	2 cut(s)	19, 504
BslI	CCNNNNNNNGG	1 cut(s)	277
BsnI	GGCC	2 cut(s)	72, 384
Bsp1286I	GDGCHC	2 cut(s)	19, 504
Bsp143I	GATC	5 cut(s)	157, 169, 340, 406, 618
Bsp1720I	GCTNAGC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	2 cut(s)	72, 384
BspCNI	CTCAG	2 cut(s)	186, 499
BspHI	TCATGA	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	2 cut(s)	67, 581
BssMI	GATC	5 cut(s)	157, 169, 340, 406, 618
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	3 cut(s)	56, 138, 147
BstAPI	GCANNNNNTGC	2 cut(s)	308, 386
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	4 cut(s)	161, 173, 185, 507
BstF5I	GGATG	2 cut(s)	350, 580
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	5 cut(s)	160, 172, 343, 409, 621
BstMBI	GATC	5 cut(s)	157, 169, 340, 406, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 311, 386
BstNI	CCWGG	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	504
BstV1I	GCAGC	6 cut(s)	295, 314, 317, 323, 336, 614
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	3 cut(s)	157, 169, 406
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	3 cut(s)	157, 169, 406
BsuRI	GGCC	2 cut(s)	72, 384
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	350, 580
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	308
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	6 cut(s)	376, 386, 419, 431, 527, 636
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	4 cut(s)	161, 173, 185, 507
DpnI	GATC	5 cut(s)	159, 171, 342, 408, 620
DpnII	GATC	5 cut(s)	157, 169, 340, 406, 618
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	6 cut(s)	379, 389, 422, 434, 530, 639
FatI	CATG	6 cut(s)	375, 385, 418, 430, 526, 635
FauNDI	CATATG	2 cut(s)	456, 538
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	6 cut(s)	303, 306, 309, 312, 325, 603
FokI	GGATG	2 cut(s)	337, 587
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	6 cut(s)	303, 306, 309, 312, 325, 603
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	6 cut(s)	303, 306, 309, 312, 325, 603
GsaI	CCCAGC	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	72, 384
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	6 cut(s)	379, 389, 422, 434, 530, 639
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	1 cut(s)	509
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	373, 502
Hpy188I	TCNGA	3 cut(s)	143, 253, 508
Hpy188III	TCNNGA	2 cut(s)	431, 518
Hpy8I	GTNNAC	2 cut(s)	373, 502
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	6 cut(s)	237, 271, 314, 361, 367, 545
HpyCH4III	ACNGT	3 cut(s)	56, 138, 147
HpyCH4V	TGCA	4 cut(s)	236, 302, 311, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 311, 386
HpyF3I	CTNAG	4 cut(s)	161, 173, 185, 507
Hsp92II	CATG	6 cut(s)	379, 389, 422, 434, 530, 639
HspAI	GCGC	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	157, 169, 340, 406, 618
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	6 cut(s)	295, 314, 317, 323, 336, 614
MaeI	CTAG	1 cut(s)	33
MalI	GATC	5 cut(s)	159, 171, 342, 408, 620
MboI	GATC	5 cut(s)	157, 169, 340, 406, 618
MboII	GAAGA	5 cut(s)	33, 93, 111, 554, 628
MflI	RGATCY	3 cut(s)	157, 169, 406
MhlI	GDGCHC	2 cut(s)	19, 504
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	231, 384
MnlI	CCTC	7 cut(s)	122, 208, 214, 274, 277, 481, 541
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	308, 311, 386
NdeI	CATATG	2 cut(s)	456, 538
NdeII	GATC	5 cut(s)	157, 169, 340, 406, 618
NlaIII	CATG	6 cut(s)	379, 389, 422, 434, 530, 639
PagI	TCATGA	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PkrI	GCNGC	6 cut(s)	304, 307, 310, 313, 326, 604
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	71
PsrI	GAACNNNNNNTAC	2 cut(s)	22, 54
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	3 cut(s)	157, 169, 406
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	6 cut(s)	303, 306, 309, 312, 325, 603
Sau3AI	GATC	5 cut(s)	157, 169, 340, 406, 618
Sau96I	GGNCC	1 cut(s)	71
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	19, 504
SetI	ASST	7 cut(s)	19, 79, 191, 310, 359, 372, 492
SfcI	CTRYAG	1 cut(s)	309
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	600
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	3 cut(s)	56, 138, 147
TasI	AATT	1 cut(s)	295
TatI	WGTACW	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	453
TseI	GCWGC	6 cut(s)	302, 305, 308, 311, 324, 602
TspDTI	ATGAA	6 cut(s)	33, 305, 333, 419, 515, 555
TspRI	CASTG	1 cut(s)	453
VneI	GTGCAC	1 cut(s)	500
XspI	CTAG	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.