Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0019137

Physical Location & Seq

Genomic Coordinates Reverse (-)

20726087 .. 20726893

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTTTGCTAAAAGCGATGAGCAGAGGCAGCAGCAGCACACCTATAACTAACTACAAGCACTACTTGTTCTTCATCGTCTTAAAACAGTTGAAGAGAGATCTCACCACAGAACTTAAGCATGGGCTTAGCTTATCACCCTCTGCAGCCTCTCAACAAGTACAATACAAGCCAACACAAGCCCTTTGTCTGAGTCTGCCGGGGAGAGCATCGGACAAGAATTTAATTAAGCCAGTTATTCAGAAGATGAATGCAGCGACTGCAGATGATGATTACAATGATATTGAGAACAGCAGCAGCAGCAGGAACACAAGAAGAAGACTGTATGTCAAGGTTTACATGGAAGGGCATGCCATTGGAAGAAAGCTGGACCTATTAGCCCATCATGGGGGAGATGATGTGGACAGAGTGCACTCTGGTCATTACGAACTTCATGTTTTGACATATGAGGACGAGGAAGGGGATTGGCTCATAGTTGGTGATGTTCCTTGGAAGCAAGTCTATTTCATCAATTCATTATCTCAATCCATATTCTTAATCGCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

183

Amino Acids

20.56

Weight (kDa)

7.87

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	145 - 171	7.4e-08	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46990 AT2G46990 AT3G62100 AT3G62100
malus_domestica	MD00G1016500.v1.1
prunus_persica	Prupe.3G001800_v2.0.a1
pyrus_communis	pycom09g19890 pycom17g28250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	220
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	387, 388
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	94
AhdI	GACNNNNNGTC	1 cut(s)	326
AluBI	AGCT	2 cut(s)	132, 367
AluI	AGCT	2 cut(s)	132, 367
Alw21I	GWGCWC	1 cut(s)	414
Alw44I	GTGCAC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	260
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	8 cut(s)	30, 33, 36, 146, 254, 294, 297, 300
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	97, 129, 491
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	8 cut(s)	42, 45, 48, 158, 266, 306, 309, 312
BccI	CCATC	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	201
BfmI	CTRYAG	2 cut(s)	144, 261
BfrI	CTTAAG	1 cut(s)	116
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	8 cut(s)	31, 34, 37, 147, 255, 295, 298, 301
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	8 cut(s)	32, 35, 38, 148, 256, 296, 299, 302
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	370
BmeRI	GACNNNNNGTC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	325
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	200, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	387, 388
Bse1I	ACTGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	200, 488
BseLI	CCNNNNNNNGG	2 cut(s)	387, 388
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	8 cut(s)	42, 45, 48, 158, 266, 306, 309, 312
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	387, 388
BsmI	GAATGC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	100
Bsp1720I	GCTNAGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	183
BspMAI	CTGCAG	2 cut(s)	148, 265
BspTI	CTTAAG	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	200, 488
BssMI	GATC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	90, 324
Bst6I	CTCTTC	1 cut(s)	89
BstAFI	CTTAAG	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	128, 191
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 36, 260, 300
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	144, 261
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	8 cut(s)	42, 45, 48, 158, 266, 306, 309, 312
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	5 cut(s)	122, 340, 350, 386, 434
CviJI	RGCY	9 cut(s)	127, 132, 149, 172, 182, 232, 367, 380, 469
CviKI_1	RGCY	9 cut(s)	127, 132, 149, 172, 182, 232, 367, 380, 469
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	128, 191
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	5 cut(s)	125, 343, 353, 389, 437
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	5 cut(s)	121, 339, 349, 385, 433
FauNDI	CATATG	1 cut(s)	445
Fnu4HI	GCNGC	8 cut(s)	31, 34, 37, 147, 255, 295, 298, 301
Fsp4HI	GCNGC	8 cut(s)	31, 34, 37, 147, 255, 295, 298, 301
GluI	GCNGC	8 cut(s)	31, 34, 37, 147, 255, 295, 298, 301
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	5 cut(s)	125, 343, 353, 389, 437
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	97, 129, 491
Hpy166II	GTNNAC	3 cut(s)	337, 403, 412
Hpy188I	TCNGA	3 cut(s)	192, 214, 243
Hpy8I	GTNNAC	3 cut(s)	337, 403, 412
HpyAV	CCTTC	2 cut(s)	338, 452
HpyCH4III	ACNGT	2 cut(s)	90, 324
HpyCH4V	TGCA	4 cut(s)	146, 254, 263, 412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 36, 260, 300
HpyF3I	CTNAG	2 cut(s)	128, 191
Hsp92II	CATG	5 cut(s)	125, 343, 353, 389, 437
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	213, 246, 289, 353, 402
Lsp1109I	GCAGC	8 cut(s)	42, 45, 48, 158, 266, 306, 309, 312
LweI	GCATC	1 cut(s)	218
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	6 cut(s)	64, 106, 256, 327, 330, 372
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	220, 225, 511
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	5 cut(s)	20, 151, 160, 442, 448
MseI	TTAA	5 cut(s)	83, 117, 224, 228, 536
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	30, 36, 260, 300
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	125, 343, 353, 389, 437
NspI	RCATGY	1 cut(s)	353
PacI	TTAATTAA	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	256
PkrI	GCNGC	8 cut(s)	32, 35, 38, 148, 256, 296, 299, 302
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	370
PstI	CTGCAG	2 cut(s)	148, 265
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	5 cut(s)	83, 117, 224, 228, 536
SatI	GCNGC	8 cut(s)	31, 34, 37, 147, 255, 295, 298, 301
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	5 cut(s)	46, 134, 336, 369, 375
SfaNI	GCATC	1 cut(s)	218
SfcI	CTRYAG	2 cut(s)	144, 261
SinI	GGWCC	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	3 cut(s)	220, 225, 511
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	90, 324
TasI	AATT	3 cut(s)	220, 225, 511
TatI	WGTACW	1 cut(s)	160
Tru1I	TTAA	5 cut(s)	83, 117, 224, 228, 536
Tru9I	TTAA	5 cut(s)	83, 117, 224, 228, 536
TseI	GCWGC	8 cut(s)	30, 33, 36, 146, 254, 294, 297, 300
TspDTI	ATGAA	5 cut(s)	64, 263, 422, 496, 504
Vha464I	CTTAAG	1 cut(s)	116
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	220
XceI	RCATGY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.