AT3G02600

Lipid phosphate phosphatase 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007586
Physical Location & Seq
Forward (+)
550975 .. 554697
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02600.7

Sequence Viewer

Length: 1095 bp
ATGGCTCGCTTCAGTTTTCCTTGTTTTCCAAATTTTGGGGGTTTTAATCAGGCTGTGACAAATCGGGGGCCTGAGATTTCAGAAACTGCTGATAATTGGGTCTCACCATCTGACATTCCACTCATAGAACCTAATAGTAAAGAGCACAGGATGAGAGAGGCACAGCTAGGCGGTCACACTCTGAGGTCCCATGGAATGACTGTTGCAAGGACTCACATGCATGATTGGATCATTCTCGTGTTACTTGTTATTCTCGAGTGTGTACTCCTTATAATCCACCCATTTTATCGCTTTGTTGGTAAAGATATGATGACTGATCTAAGTTACCCGTTAAAGAGTAACACCGTACCAATTTGGTCTGTCCCGGTATATGCGATGCTGTTACCTTTGGTAATCTTCATCTTTATCTACTTCCGTCGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTCTGTTCTGGTGACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCCAGATGGCAAAGCTCTTTATGATAGCCTTGGAGATGTTATATGCCATGGTGATAAAAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATGGTCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTCAAGCATTTGACGGTAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTTGTCGGCATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGCTTGCTAGGTCTTGCGATCTCTACAATCTGTTATCTTCAATTTTTCCCGCCACCATATCACACCGAAGGTTGGGGACCATATGCTTACTTCCAAGTGTTGGAGGCTGCGAGAGTGCAAGGAGCAGCGAATGGAGCAGTGCAGCAGCCGCCGCCCCAAGTTAACAACGGTGAAGAAGAAGACGGTGGGTTTATGGGTTTACATTTGGTGGATAATCCGACTATGAGGAGAGAAGAGGATGTAGAAACTGGTAGAGGCTGA

Protein Analysis

364

Amino Acids

40.77

Weight (kDa)

6.23

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 100 - 244 1.6e-30 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AatII GACGTC 1 cut(s) 825
AccB7I CCANNNNNTGG 2 cut(s) 35, 934
AccI GTMKAC 1 cut(s) 517
AccII CGCG 1 cut(s) 446
AciI CCGC 5 cut(s) 171, 446, 884, 983, 986
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 822
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 3 cut(s) 264, 348, 486
AfiI CCNNNNNNNGG 3 cut(s) 35, 906, 934
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 2 cut(s) 707, 875
AjiI CACGTC 2 cut(s) 524, 651
AluBI AGCT 5 cut(s) 166, 563, 633, 739, 773
AluI AGCT 5 cut(s) 166, 563, 633, 739, 773
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 3 cut(s) 106, 461, 674
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 2 cut(s) 68, 724
ApeKI GCWGC 5 cut(s) 770, 941, 959, 976, 979
ApoI RAATTY 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 68, 186, 911
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 4 cut(s) 96, 487, 611, 1016
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 2 cut(s) 186, 911
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 5 cut(s) 782, 928, 971, 988, 991
BccI CCATC 2 cut(s) 115, 548
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 3 cut(s) 106, 461, 674
BfaI CTAG 3 cut(s) 167, 452, 842
BisI GCNGC 7 cut(s) 771, 942, 960, 977, 980, 983, 986
BlsI GCNGC 7 cut(s) 772, 943, 961, 978, 981, 984, 987
BmcAI AGTACT 1 cut(s) 486
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 2 cut(s) 186, 911
BmeT110I CYCGRG 1 cut(s) 254
BmgBI CACGTC 2 cut(s) 524, 651
BmgT120I GGNCC 3 cut(s) 68, 186, 911
BmiI GGNNCC 3 cut(s) 69, 188, 912
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 3 cut(s) 366, 484, 817
BoxI GACNNNNGTC 1 cut(s) 649
BpiI GAAGAC 1 cut(s) 1020
BpuMI CCSGG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 822
BsaI GGTCTC 3 cut(s) 106, 461, 674
BsaJI CCNNGG 3 cut(s) 190, 577, 595
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 906, 934
Bse1I ACTGG 1 cut(s) 1087
Bse8I GATNNNNATC 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 190, 577, 595
BseGI GGATG 2 cut(s) 156, 1078
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 35, 906, 934
BseMII CTCAG 2 cut(s) 63, 173
BseNI ACTGG 1 cut(s) 1087
BseRI GAGGAG 1 cut(s) 1075
BseXI GCAGC 5 cut(s) 782, 928, 971, 988, 991
BsgI GTGCAG 1 cut(s) 995
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 2 cut(s) 70, 726
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 3 cut(s) 172, 347, 924
BslI CCNNNNNNNGG 3 cut(s) 35, 906, 934
BsmAI GTCTC 3 cut(s) 106, 461, 674
BsmFI GGGAC 3 cut(s) 172, 347, 924
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 2 cut(s) 70, 726
Bso31I GGTCTC 3 cut(s) 106, 461, 674
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 228, 316, 433, 852
Bsp19I CCATGG 2 cut(s) 190, 595
BspACI CCGC 5 cut(s) 171, 446, 884, 983, 986
BspANI GGCC 2 cut(s) 70, 726
BspCNI CTCAG 2 cut(s) 64, 174
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 3 cut(s) 69, 188, 912
BspPI GGATC 1 cut(s) 236
BspTNI GGTCTC 3 cut(s) 106, 461, 674
BsrI ACTGG 1 cut(s) 1087
BssECI CCNNGG 3 cut(s) 190, 577, 595
BssMI GATC 4 cut(s) 228, 316, 433, 852
BssNI GRCGYC 1 cut(s) 822
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 3 cut(s) 190, 577, 595
Bst2BI CACGAG 1 cut(s) 236
Bst4CI ACNGT 5 cut(s) 202, 346, 719, 1004, 1019
Bst6I CTCTTC 2 cut(s) 415, 1062
BstACI GRCGYC 1 cut(s) 822
BstC8I GCNNGC 2 cut(s) 7, 839
BstDEI CTNAG 3 cut(s) 72, 182, 320
BstDSI CCRYGG 2 cut(s) 190, 595
BstF5I GGATG 2 cut(s) 156, 1078
BstFNI CGCG 1 cut(s) 446
BstKTI GATC 4 cut(s) 231, 319, 436, 855
BstMAI GTCTC 3 cut(s) 106, 461, 674
BstMBI GATC 4 cut(s) 228, 316, 433, 852
BstMWI GCNNNNNNNGC 4 cut(s) 814, 968, 982, 985
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 5 cut(s) 782, 928, 971, 988, 991
BstV2I GAAGAC 1 cut(s) 1020
BsuRI GGCC 2 cut(s) 70, 726
BtgI CCRYGG 2 cut(s) 190, 595
BtgZI GCGATG 1 cut(s) 389
BtrI CACGTC 2 cut(s) 524, 651
BtsCI GGATG 2 cut(s) 156, 1078
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 1 cut(s) 978
Cac8I GCNNGC 2 cut(s) 7, 839
CaiI CAGNNNCTG 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 68, 186, 911
CseI GACGC 1 cut(s) 598
Csp6I GTAC 3 cut(s) 263, 347, 485
CviAII CATG 5 cut(s) 191, 217, 221, 596, 654
CviQI GTAC 3 cut(s) 263, 347, 485
DdeI CTNAG 3 cut(s) 72, 182, 320
DpnI GATC 4 cut(s) 230, 318, 435, 854
DpnII GATC 4 cut(s) 228, 316, 433, 852
DraIII CACNNNGTG 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 415, 1062
EarI CTCTTC 2 cut(s) 415, 1062
Eco130I CCWWGG 3 cut(s) 190, 577, 595
Eco31I GGTCTC 3 cut(s) 106, 461, 674
Eco47I GGWCC 2 cut(s) 186, 911
Eco88I CYCGRG 1 cut(s) 254
EcoO109I RGGNCCY 2 cut(s) 68, 186
EcoT14I CCWWGG 3 cut(s) 190, 577, 595
EcoT22I ATGCAT 2 cut(s) 222, 746
ErhI CCWWGG 3 cut(s) 190, 577, 595
FaeI CATG 5 cut(s) 194, 220, 224, 599, 657
FaqI GGGAC 3 cut(s) 172, 347, 924
FatI CATG 5 cut(s) 190, 216, 220, 595, 653
FauI CCCGC 1 cut(s) 891
FauNDI CATATG 1 cut(s) 916
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 7 cut(s) 771, 942, 960, 977, 980, 983, 986
FokI GGATG 2 cut(s) 163, 1085
Fsp4HI GCNGC 7 cut(s) 771, 942, 960, 977, 980, 983, 986
FspBI CTAG 3 cut(s) 167, 452, 842
GluI GCNGC 7 cut(s) 771, 942, 960, 977, 980, 983, 986
HaeIII GGCC 2 cut(s) 70, 726
HapII CCGG 1 cut(s) 365
HgaI GACGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 5 cut(s) 194, 220, 224, 599, 657
HincII GTYRAC 2 cut(s) 518, 997
HindII GTYRAC 2 cut(s) 518, 997
HindIII AAGCTT 1 cut(s) 631
HinfI GANTC 2 cut(s) 211, 703
HpaI GTTAAC 1 cut(s) 997
HpaII CCGG 1 cut(s) 365
HphI GGTGA 4 cut(s) 96, 487, 611, 1016
Hpy166II GTNNAC 5 cut(s) 263, 518, 644, 997, 1034
Hpy188I TCNGA 5 cut(s) 82, 112, 183, 674, 1053
Hpy188III TCNNGA 4 cut(s) 254, 527, 551, 696
Hpy8I GTNNAC 5 cut(s) 263, 518, 644, 997, 1034
Hpy99I CGWCG 1 cut(s) 420
HpyAV CCTTC 2 cut(s) 614, 896
HpyCH4III ACNGT 5 cut(s) 202, 346, 719, 1004, 1019
HpyCH4IV ACGT 4 cut(s) 523, 650, 729, 822
HpyF10VI GCNNNNNNNGC 4 cut(s) 814, 968, 982, 985
HpyF3I CTNAG 3 cut(s) 72, 182, 320
HpySE526I ACGT 4 cut(s) 523, 650, 729, 822
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 5 cut(s) 194, 220, 224, 599, 657
KspAI GTTAAC 1 cut(s) 997
Kzo9I GATC 4 cut(s) 228, 316, 433, 852
LmnI GCTCC 2 cut(s) 956, 968
Lsp1109I GCAGC 5 cut(s) 782, 928, 971, 988, 991
LweI GCATC 3 cut(s) 366, 484, 817
MaeI CTAG 3 cut(s) 167, 452, 842
MaeII ACGT 4 cut(s) 523, 650, 729, 822
MaeIII GTNAC 8 cut(s) 55, 173, 240, 323, 338, 381, 475, 623
MalI GATC 4 cut(s) 230, 318, 435, 854
MboI GATC 4 cut(s) 228, 316, 433, 852
MboII GAAGA 9 cut(s) 388, 428, 432, 526, 863, 1019, 1022, 1025, 1079
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 4 cut(s) 31, 94, 351, 875
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 2 cut(s) 915, 1076
MnlI CCTC 7 cut(s) 151, 177, 827, 931, 1053, 1063, 1082
Mph1103I ATGCAT 2 cut(s) 222, 746
MseI TTAA 3 cut(s) 45, 332, 996
MslI CAYNNNNRTG 2 cut(s) 219, 236
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 511
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 4 cut(s) 814, 968, 982, 985
NciI CCSGG 1 cut(s) 365
NcoI CCATGG 2 cut(s) 190, 595
NdeI CATATG 1 cut(s) 916
NdeII GATC 4 cut(s) 228, 316, 433, 852
NlaIII CATG 5 cut(s) 194, 220, 224, 599, 657
NlaIV GGNNCC 3 cut(s) 69, 188, 912
NmuCI GTSAC 4 cut(s) 55, 173, 475, 623
NsiI ATGCAT 2 cut(s) 222, 746
NspI RCATGY 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 254
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 703
PflFI GACNNNGTC 1 cut(s) 522
PflMI CCANNNNNTGG 2 cut(s) 35, 934
PkrI GCNGC 7 cut(s) 772, 943, 961, 978, 981, 984, 987
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 186
PshAI GACNNNNGTC 1 cut(s) 649
PsiI TTATAA 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 186
PspN4I GGNNCC 3 cut(s) 69, 188, 912
PspPI GGNCC 3 cut(s) 68, 186, 911
PspPPI RGGWCCY 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 522
RsaI GTAC 3 cut(s) 264, 348, 486
RsaNI GTAC 3 cut(s) 263, 347, 485
RseI CAYNNNNRTG 2 cut(s) 219, 236
SalI GTCGAC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 45, 332, 996
SatI GCNGC 7 cut(s) 771, 942, 960, 977, 980, 983, 986
Sau3AI GATC 4 cut(s) 228, 316, 433, 852
Sau96I GGNCC 3 cut(s) 68, 186, 911
ScaI AGTACT 1 cut(s) 486
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 3 cut(s) 366, 484, 817
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 2 cut(s) 186, 911
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 2 cut(s) 219, 236
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 4 cut(s) 31, 94, 351, 875
SsiI CCGC 5 cut(s) 171, 446, 884, 983, 986
SspMI CTAG 3 cut(s) 167, 452, 842
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 3 cut(s) 190, 577, 595
TaaI ACNGT 5 cut(s) 202, 346, 719, 1004, 1019
TaiI ACGT 4 cut(s) 526, 653, 732, 825
TaqI TCGA 3 cut(s) 255, 418, 517
TasI AATT 4 cut(s) 31, 94, 351, 875
TatI WGTACW 2 cut(s) 262, 484
TauI GCSGC 2 cut(s) 985, 988
TfiI GAWTC 1 cut(s) 703
Tru1I TTAA 3 cut(s) 45, 332, 996
Tru9I TTAA 3 cut(s) 45, 332, 996
TscAI CASTG 1 cut(s) 978
TseFI GTSAC 4 cut(s) 55, 173, 475, 623
TseI GCWGC 5 cut(s) 770, 941, 959, 976, 979
Tsp45I GTSAC 4 cut(s) 55, 173, 475, 623
TspDTI ATGAA 2 cut(s) 388, 428
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 978
Tth111I GACNNNGTC 1 cut(s) 522
Van91I CCANNNNNTGG 2 cut(s) 35, 934
VpaK11BI GGWCC 2 cut(s) 186, 911
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 517
XspI CTAG 3 cut(s) 167, 452, 842
ZraI GACGTC 1 cut(s) 823
ZrmI AGTACT 1 cut(s) 486
Zsp2I ATGCAT 2 cut(s) 222, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.