MD09G1256800.v1.1

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0007586
Physical Location & Seq
Forward (+)
32853091 .. 32859428
6338 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1256800.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGCCTTGGTGGGATATTGGATTGCTTTCTCGTCTCAAAAACTTGAGAGGCGTCGTCTTTCAGGGTGTGTCAAGCAAGAAGCCGGAGATTTCTGTGGTTAATACTGATTTGTTCACACCCATTCACTTACCATTGATAGAACACAGGGAGGATGAGAACAAAATGCAGGCAGTTCAGCTTGGTTCGCATACCGTAAGGTCCCATGGAGTGACACTTGCAAGGACACACATGCATGATTGGGTGATACTGATGCTTCTTGGGTTGATAGTTGTCATCCTTAATGTGATTCATCCATTTTATCGCTTCGTAGGAAAAGACATGATGACTGATCTTAAATATCCCTTGAAAACTAACACAGTACCTGTTTGGGCCGTCCCTATGTATGCAGTTGCACTGCCCATTGCAATTTTTGTTGTTGTCTATTTCCGCAGGAGAGATGTCTATGACCTTCACCATGCCATACTAGGTCTATTGTTCTCTGTCCTGATAACAGGGGTTCTTACAGCTGCTATAAAAGATGCAGTTGGTCGACCCCGACCAGACTTCTTTTGGCGTTGTTTTCCAGATGGGAAGGATGTGTATGATGAATGGGGAAATGTTGTATGCAATGGTGTGAAGAGTGTTATAAAGGAGGGGCACAAGAGTTTTCCAAGTGGCCATACTTCATGGTCCTTTGCTGGTCTTGGATTTCTCTCTCTGTATTTGTCAGGAAAAATACAAGTATTTGATCGCAAAGGCCATGTTGCAAAACTTTGCATTGTTATTTTTCCACTACTTGTTGCATCACTTGTCGGAATTTCTCGAGTCGATGACTACTGGCACCACTGGCAAGATGTATTTGCTGGAGGTCTTCTAGGGCTTACGGTTGCTACATTTTGCTATTTGCAGTTCTTTCCACCCCCATATCATGCCCAAGGTTGGGGCCCGTATGCTTACTTCCAGGTGTTGGAGGAGTCACGTTCAGGGACACAGGTTACCAGCACGGTAAATGCGAGCAATGTGCAGGTCAGAGATTCTTGGGTTGGGAATCAGGTAGACGAAACAAGCATCCATGGATGTATGGGGTTAACATTAGCACGTGATTCTGGTTCGGCATTGGAAGATTTAGAATCTGGAAGGAGATAG

Protein Analysis

375

Amino Acids

41.98

Weight (kDa)

8.22

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 154 - 298 7.8e-32 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 946
AccI GTMKAC 2 cut(s) 529, 1035
AciI CCGC 1 cut(s) 427
AcoI YGGCCR 1 cut(s) 655
AcsI RAATTY 1 cut(s) 795
AcvI CACGTG 1 cut(s) 1079
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 3 cut(s) 918, 919, 946
AgsI TTSAA 1 cut(s) 346
AjnI CCWGG 1 cut(s) 939
AluBI AGCT 2 cut(s) 178, 506
AluI AGCT 2 cut(s) 178, 506
Alw26I GTCTC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 801
AoxI GGCC 4 cut(s) 369, 655, 736, 922
ApaI GGGCCC 1 cut(s) 926
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 795
AspS9I GGNCC 5 cut(s) 198, 369, 669, 922, 923
AsuHPI GGTGA 2 cut(s) 253, 443
AvaI CYCGRG 1 cut(s) 801
AvaII GGWCC 2 cut(s) 198, 669
BaeGI GKGCMC 2 cut(s) 639, 926
BalI TGGCCA 1 cut(s) 657
BanI GGYRCC 1 cut(s) 819
BanII GRGCYC 1 cut(s) 926
BarI GAAGNNNNNNTAC 2 cut(s) 920, 952
BbrPI CACGTG 1 cut(s) 1079
BbsI GAAGAC 1 cut(s) 842
BbvI GCAGC 1 cut(s) 493
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 356
BcgI CGANNNNNNTGC 2 cut(s) 982, 1016
BciT130I CCWGG 1 cut(s) 941
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 2 cut(s) 464, 854
BfuAI ACCTGC 1 cut(s) 994
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme1390I CCNGG 1 cut(s) 941
Bme18I GGWCC 2 cut(s) 198, 669
BmeT110I CYCGRG 1 cut(s) 801
BmgT120I GGNCC 5 cut(s) 198, 369, 669, 922, 923
BmiI GGNNCC 4 cut(s) 200, 821, 923, 924
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 4 cut(s) 240, 508, 791, 1056
BpiI GAAGAC 1 cut(s) 842
BpmI CTGGAG 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 1079
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 4 cut(s) 5, 202, 913, 1051
Bsc4I CCNNNNNNNGG 3 cut(s) 918, 919, 946
Bse1I ACTGG 2 cut(s) 821, 830
Bse3DI GCAATG 3 cut(s) 399, 613, 1003
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 4 cut(s) 5, 202, 913, 1051
BseGI GGATG 6 cut(s) 157, 273, 289, 580, 1047, 1061
BseLI CCNNNNNNNGG 3 cut(s) 918, 919, 946
BseMI GCAATG 3 cut(s) 399, 613, 1003
BseNI ACTGG 2 cut(s) 821, 830
BseRI GAGGAG 1 cut(s) 965
BseSI GKGCMC 2 cut(s) 639, 926
BseXI GCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 1022
BshFI GGCC 4 cut(s) 371, 657, 738, 924
BshNI GGYRCC 1 cut(s) 819
BsiHKCI CYCGRG 1 cut(s) 801
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 3 cut(s) 184, 359, 979
BslI CCNNNNNNNGG 3 cut(s) 918, 919, 946
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 3 cut(s) 184, 359, 979
BsnI GGCC 4 cut(s) 371, 657, 738, 924
BsoBI CYCGRG 1 cut(s) 801
Bsp120I GGGCCC 1 cut(s) 922
Bsp1286I GDGCHC 2 cut(s) 639, 926
Bsp143I GATC 2 cut(s) 328, 727
Bsp19I CCATGG 2 cut(s) 202, 1051
BspACI CCGC 1 cut(s) 427
BspANI GGCC 4 cut(s) 371, 657, 738, 924
BspLI GGNNCC 4 cut(s) 200, 821, 923, 924
BspMI ACCTGC 1 cut(s) 994
BspT107I GGYRCC 1 cut(s) 819
BsrDI GCAATG 3 cut(s) 399, 613, 1003
BsrI ACTGG 2 cut(s) 821, 830
BssECI CCNNGG 4 cut(s) 5, 202, 913, 1051
BssMI GATC 2 cut(s) 328, 727
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 4 cut(s) 5, 202, 913, 1051
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 4 cut(s) 193, 358, 865, 985
Bst6I CTCTTC 1 cut(s) 611
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 1079
BstC8I GCNNGC 2 cut(s) 168, 994
BstDSI CCRYGG 2 cut(s) 202, 1051
BstEII GGTNACC 1 cut(s) 973
BstF5I GGATG 6 cut(s) 157, 273, 289, 580, 1047, 1061
BstKTI GATC 2 cut(s) 331, 730
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 328, 727
BstMWI GCNNNNNNNGC 2 cut(s) 184, 826
BstNI CCWGG 1 cut(s) 941
BstNSI RCATGY 1 cut(s) 232
BstPI GGTNACC 1 cut(s) 973
BstSCI CCNGG 1 cut(s) 939
BstSLI GKGCMC 2 cut(s) 639, 926
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 1 cut(s) 842
BsuRI GGCC 4 cut(s) 371, 657, 738, 924
BtgI CCRYGG 2 cut(s) 202, 1051
BtsCI GGATG 6 cut(s) 157, 273, 289, 580, 1047, 1061
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 2 cut(s) 392, 823
BveI ACCTGC 1 cut(s) 994
Cac8I GCNNGC 2 cut(s) 168, 994
CaiI CAGNNNCTG 1 cut(s) 362
Cfr13I GGNCC 5 cut(s) 198, 369, 669, 922, 923
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 359
CviAII CATG 9 cut(s) 203, 229, 233, 319, 455, 666, 740, 908, 1052
CviJI RGCY 8 cut(s) 82, 178, 371, 506, 657, 738, 859, 924
CviKI_1 RGCY 8 cut(s) 82, 178, 371, 506, 657, 738, 859, 924
CviQI GTAC 1 cut(s) 359
DpnI GATC 2 cut(s) 330, 729
DpnII GATC 2 cut(s) 328, 727
EaeI YGGCCR 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
Eco130I CCWWGG 4 cut(s) 5, 202, 913, 1051
Eco24I GRGCYC 1 cut(s) 926
Eco47I GGWCC 2 cut(s) 198, 669
Eco72I CACGTG 1 cut(s) 1079
Eco88I CYCGRG 1 cut(s) 801
Eco91I GGTNACC 1 cut(s) 973
EcoO109I RGGNCCY 2 cut(s) 198, 922
EcoO65I GGTNACC 1 cut(s) 973
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 4 cut(s) 5, 202, 913, 1051
EcoT22I ATGCAT 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 926
ErhI CCWWGG 4 cut(s) 5, 202, 913, 1051
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 9 cut(s) 206, 232, 236, 322, 458, 669, 743, 911, 1055
FaqI GGGAC 3 cut(s) 184, 359, 979
FatI CATG 9 cut(s) 202, 228, 232, 318, 454, 665, 739, 907, 1051
FblI GTMKAC 2 cut(s) 529, 1035
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 6 cut(s) 164, 260, 276, 587, 1034, 1068
FriOI GRGCYC 1 cut(s) 926
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 2 cut(s) 464, 854
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 4 cut(s) 371, 657, 738, 924
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 9 cut(s) 206, 232, 236, 322, 458, 669, 743, 911, 1055
HincII GTYRAC 2 cut(s) 530, 1068
HindII GTYRAC 2 cut(s) 530, 1068
HinfI GANTC 7 cut(s) 286, 804, 953, 1013, 1027, 1082, 1109
HpaI GTTAAC 1 cut(s) 1068
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 253, 443
Hpy166II GTNNAC 4 cut(s) 114, 530, 1036, 1068
Hpy188I TCNGA 2 cut(s) 794, 1010
Hpy188III TCNNGA 5 cut(s) 484, 563, 708, 801, 1113
Hpy8I GTNNAC 4 cut(s) 114, 530, 1036, 1068
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 458, 565, 1110
HpyCH4III ACNGT 4 cut(s) 193, 358, 865, 985
HpyCH4IV ACGT 2 cut(s) 958, 1078
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 826
HpySE526I ACGT 2 cut(s) 958, 1078
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 9 cut(s) 206, 232, 236, 322, 458, 669, 743, 911, 1055
KspAI GTTAAC 1 cut(s) 1068
Kzo9I GATC 2 cut(s) 328, 727
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 4 cut(s) 240, 508, 791, 1056
MaeI CTAG 2 cut(s) 464, 854
MaeII ACGT 2 cut(s) 958, 1078
MaeIII GTNAC 3 cut(s) 208, 954, 973
MalI GATC 2 cut(s) 330, 729
MboI GATC 2 cut(s) 328, 727
MboII GAAGA 3 cut(s) 628, 842, 1112
MhlI GDGCHC 2 cut(s) 639, 926
MlsI TGGCCA 1 cut(s) 657
MluCI AATT 2 cut(s) 405, 795
MluNI TGGCCA 1 cut(s) 657
MlyI GAGTC 2 cut(s) 813, 962
MmeI TCCRAC 2 cut(s) 772, 927
MnlI CCTC 5 cut(s) 41, 142, 625, 839, 943
Mox20I TGGCCA 1 cut(s) 657
Mph1103I ATGCAT 1 cut(s) 234
MscI TGGCCA 1 cut(s) 657
MseI TTAA 4 cut(s) 99, 279, 333, 1067
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 941
MvaI CCWGG 1 cut(s) 941
MwoI GCNNNNNNNGC 2 cut(s) 184, 826
NcoI CCATGG 2 cut(s) 202, 1051
NdeII GATC 2 cut(s) 328, 727
NlaIII CATG 9 cut(s) 206, 232, 236, 322, 458, 669, 743, 911, 1055
NlaIV GGNNCC 4 cut(s) 200, 821, 923, 924
NmuCI GTSAC 2 cut(s) 208, 954
NsiI ATGCAT 1 cut(s) 234
NspI RCATGY 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 801
PcsI WCGNNNNNNNCGW 1 cut(s) 989
PfeI GAWTC 5 cut(s) 286, 1013, 1027, 1082, 1109
PflMI CCANNNNNTGG 1 cut(s) 946
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 2 cut(s) 812, 961
PmaCI CACGTG 1 cut(s) 1079
PmlI CACGTG 1 cut(s) 1079
PpsI GAGTC 2 cut(s) 812, 961
Ppu21I YACGTR 1 cut(s) 1079
PpuMI RGGWCCY 1 cut(s) 198
PsiI TTATAA 1 cut(s) 626
Psp5II RGGWCCY 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 939
PspCI CACGTG 1 cut(s) 1079
PspEI GGTNACC 1 cut(s) 973
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 4 cut(s) 200, 821, 923, 924
PspOMI GGGCCC 1 cut(s) 922
PspPI GGNCC 5 cut(s) 198, 369, 669, 922, 923
PspPPI RGGWCCY 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 231
SalI GTCGAC 1 cut(s) 528
SaqAI TTAA 4 cut(s) 99, 279, 333, 1067
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 2 cut(s) 328, 727
Sau96I GGNCC 5 cut(s) 198, 369, 669, 922, 923
SchI GAGTC 2 cut(s) 813, 962
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 2 cut(s) 639, 926
SfaNI GCATC 4 cut(s) 240, 508, 791, 1056
Sfr274I CTCGAG 1 cut(s) 801
SinI GGWCC 2 cut(s) 198, 669
SlaI CTCGAG 1 cut(s) 801
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 43, 801
SmoI CTYRAG 2 cut(s) 43, 801
Sse9I AATT 2 cut(s) 405, 795
SsiI CCGC 1 cut(s) 427
SspMI CTAG 2 cut(s) 464, 854
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 4 cut(s) 5, 202, 913, 1051
TaaI ACNGT 4 cut(s) 193, 358, 865, 985
TaiI ACGT 2 cut(s) 961, 1081
TaqI TCGA 3 cut(s) 529, 802, 807
TasI AATT 2 cut(s) 405, 795
TfiI GAWTC 5 cut(s) 286, 1013, 1027, 1082, 1109
Tru1I TTAA 4 cut(s) 99, 279, 333, 1067
Tru9I TTAA 4 cut(s) 99, 279, 333, 1067
TscAI CASTG 2 cut(s) 399, 830
TseFI GTSAC 2 cut(s) 208, 954
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 208, 954
TspDTI ATGAA 3 cut(s) 278, 600, 654
TspRI CASTG 2 cut(s) 399, 830
Van91I CCANNNNNTGG 1 cut(s) 946
VpaK11BI GGWCC 2 cut(s) 198, 669
XapI RAATTY 1 cut(s) 795
XceI RCATGY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 546
XhoI CTCGAG 1 cut(s) 801
XmiI GTMKAC 2 cut(s) 529, 1035
XspI CTAG 2 cut(s) 464, 854
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.