Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007586

Physical Location & Seq

Genomic Coordinates Forward (+)

17699694 .. 17705364

Gene Structure 5671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17240.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGCCTTGGTGGGATATTGGATTGCTTTCTCGTCTCAAAAACTTGAGTGGCGTCGTCTTTCAGGGTGTGTCAAGCAAGAAGCCGGAGATTTCTGCGGTTAATACTGATTTGTTCACACCCATTCACTTACCATTGATAGAACACAGGGAGGATGAGAACAAAATGCAGGAAGTTCAGCTTGGTTCGCATACCATAAGGTCCCATGGAGTGACACTTGCAAGGACACACATGCATGATTGGGTGATACTGATGCTTCTTGGGTTGATAGTTGTCATCCTTAATGTGATTCATCCATTTTATCGCTTCGTAGGAAAAGACATGATGGCTGATCTTAAATATCCCTTGAAAGTTAACACAGTACCTGTTTGGGCTGTCCCTATGTATGCAGTTGCACTGCCCATAGCAATTTTTGTTGTTGTCTATTTCCGCAGGAGAGATGTCTATGACCTTCACCATGCCATACTAGGTCTATTGTTCTCTGTCCTGATAACAGGGGTTCTTACAGATGCTATAAAAGATGCAGTTGGTCGACCCCGACCAGACTTCTTTTGGCGCTGTTTTCCAGATGGGAAGGATGTGTATGATAAATGGGGAAATGTTGTATGCAATGGTGTGAAGAGTGTTATAAAGGAGGGGCACAAGAGTTTTCCAAGTGGCCATACTTCATGGTCCTTTGCTGGTCTTGGATTTCTCTCTCTGTATTTGTCAGGAAAAATACAAGTATTTGATCGCAAAGGCCATGTTGCAAAACTTTGCATTGTTATTTTTCCACTACTTGTTGCATCACTTGTCGGAATTTCTCGAGTTGATGACTACTGGCACCACTGGCAAGATGTATTTGCTGGAGGTCTTCTAGGGCTTACGGTTGCTACATTTTGCTATTTGCAGTTCTTTCCACCCCCATATCATGCCCAAGGTTGGGGCCCGTATGCTTACTTCCAGGTGTTGGAGGAGTCACGTTCAGGGACACAGGTTACCAGCACAGTAAATGCGAGCAATGTGCAGGTCATAGATTCTCGGGTTGGGAATCAGGTAGACGAAACAAGCATCCATGGATGTATGGGGTTAACATTAGCACGTGATTCTGGTTCGGCATTGGAAGATTTAGAATCTGGAAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

375

Amino Acids

41.89

Weight (kDa)

7.75

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600
malus_domestica	MD09G1256800.v1.1 MD17G1250400.v1.1
prunus_persica	Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1
pyrus_communis	pycom09g17240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	994
AccB1I	GGYRCC	1 cut(s)	819
AccB7I	CCANNNNNTGG	1 cut(s)	946
AccI	GTMKAC	2 cut(s)	529, 1035
AciI	CCGC	2 cut(s)	95, 427
AcoI	YGGCCR	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	795
AcvI	CACGTG	1 cut(s)	1079
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	918, 919, 946
AgsI	TTSAA	1 cut(s)	346
AjnI	CCWGG	1 cut(s)	939
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	2 cut(s)	801, 1017
AoxI	GGCC	3 cut(s)	655, 736, 922
ApaI	GGGCCC	1 cut(s)	926
ApoI	RAATTY	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	555
AspS9I	GGNCC	4 cut(s)	198, 669, 922, 923
AsuHPI	GGTGA	2 cut(s)	253, 443
AvaI	CYCGRG	2 cut(s)	801, 1017
AvaII	GGWCC	2 cut(s)	198, 669
BaeGI	GKGCMC	2 cut(s)	639, 926
BalI	TGGCCA	1 cut(s)	657
BanI	GGYRCC	1 cut(s)	819
BanII	GRGCYC	1 cut(s)	926
BarI	GAAGNNNNNNTAC	2 cut(s)	920, 952
BbrPI	CACGTG	1 cut(s)	1079
BbsI	GAAGAC	1 cut(s)	842
BccI	CCATC	2 cut(s)	316, 560
BcgI	CGANNNNNNTGC	2 cut(s)	982, 1016
BciT130I	CCWGG	1 cut(s)	941
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	464, 854
BfoI	RGCGCY	1 cut(s)	556
BfuAI	ACCTGC	1 cut(s)	994
Bme1390I	CCNGG	1 cut(s)	941
Bme18I	GGWCC	2 cut(s)	198, 669
BmeT110I	CYCGRG	2 cut(s)	801, 1017
BmgT120I	GGNCC	4 cut(s)	198, 669, 922, 923
BmiI	GGNNCC	4 cut(s)	200, 821, 923, 924
BmrFI	CCNGG	1 cut(s)	941
BmsI	GCATC	5 cut(s)	240, 496, 508, 791, 1056
BpiI	GAAGAC	1 cut(s)	842
BpmI	CTGGAG	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	1079
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	4 cut(s)	5, 202, 913, 1051
Bsc4I	CCNNNNNNNGG	3 cut(s)	918, 919, 946
Bse1I	ACTGG	2 cut(s)	821, 830
Bse3DI	GCAATG	2 cut(s)	613, 1003
BseBI	CCWGG	1 cut(s)	941
BseDI	CCNNGG	4 cut(s)	5, 202, 913, 1051
BseGI	GGATG	6 cut(s)	157, 273, 289, 580, 1047, 1061
BseLI	CCNNNNNNNGG	3 cut(s)	918, 919, 946
BseMI	GCAATG	2 cut(s)	613, 1003
BseNI	ACTGG	2 cut(s)	821, 830
BseRI	GAGGAG	1 cut(s)	965
BseSI	GKGCMC	2 cut(s)	639, 926
BsgI	GTGCAG	1 cut(s)	1022
BshFI	GGCC	3 cut(s)	657, 738, 924
BshNI	GGYRCC	1 cut(s)	819
BsiHKCI	CYCGRG	2 cut(s)	801, 1017
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	3 cut(s)	184, 359, 979
BslI	CCNNNNNNNGG	3 cut(s)	918, 919, 946
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	3 cut(s)	184, 359, 979
BsnI	GGCC	3 cut(s)	657, 738, 924
BsoBI	CYCGRG	2 cut(s)	801, 1017
Bsp120I	GGGCCC	1 cut(s)	922
Bsp1286I	GDGCHC	2 cut(s)	639, 926
Bsp143I	GATC	2 cut(s)	328, 727
Bsp19I	CCATGG	2 cut(s)	202, 1051
BspACI	CCGC	2 cut(s)	95, 427
BspANI	GGCC	3 cut(s)	657, 738, 924
BspLI	GGNNCC	4 cut(s)	200, 821, 923, 924
BspMI	ACCTGC	1 cut(s)	994
BspT107I	GGYRCC	1 cut(s)	819
BsrDI	GCAATG	2 cut(s)	613, 1003
BsrI	ACTGG	2 cut(s)	821, 830
BssECI	CCNNGG	4 cut(s)	5, 202, 913, 1051
BssMI	GATC	2 cut(s)	328, 727
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	4 cut(s)	5, 202, 913, 1051
Bst2UI	CCWGG	1 cut(s)	941
Bst4CI	ACNGT	3 cut(s)	358, 865, 985
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	1079
BstC8I	GCNNGC	1 cut(s)	994
BstDSI	CCRYGG	2 cut(s)	202, 1051
BstEII	GGTNACC	1 cut(s)	973
BstF5I	GGATG	6 cut(s)	157, 273, 289, 580, 1047, 1061
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	555
BstKTI	GATC	2 cut(s)	331, 730
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	328, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 826
BstNI	CCWGG	1 cut(s)	941
BstNSI	RCATGY	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	973
BstSCI	CCNGG	1 cut(s)	939
BstSLI	GKGCMC	2 cut(s)	639, 926
BstV2I	GAAGAC	1 cut(s)	842
BsuRI	GGCC	3 cut(s)	657, 738, 924
BtgI	CCRYGG	2 cut(s)	202, 1051
BtsCI	GGATG	6 cut(s)	157, 273, 289, 580, 1047, 1061
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	2 cut(s)	392, 823
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	1 cut(s)	994
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	555
Cfr13I	GGNCC	4 cut(s)	198, 669, 922, 923
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	9 cut(s)	203, 229, 233, 319, 455, 666, 740, 908, 1052
CviJI	RGCY	8 cut(s)	82, 178, 326, 371, 657, 738, 859, 924
CviKI_1	RGCY	8 cut(s)	82, 178, 326, 371, 657, 738, 859, 924
CviQI	GTAC	1 cut(s)	359
DpnI	GATC	2 cut(s)	330, 729
DpnII	GATC	2 cut(s)	328, 727
EaeI	YGGCCR	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
Eco130I	CCWWGG	4 cut(s)	5, 202, 913, 1051
Eco24I	GRGCYC	1 cut(s)	926
Eco47I	GGWCC	2 cut(s)	198, 669
Eco72I	CACGTG	1 cut(s)	1079
Eco88I	CYCGRG	2 cut(s)	801, 1017
Eco91I	GGTNACC	1 cut(s)	973
EcoO109I	RGGNCCY	2 cut(s)	198, 922
EcoO65I	GGTNACC	1 cut(s)	973
EcoRII	CCWGG	1 cut(s)	939
EcoT14I	CCWWGG	4 cut(s)	5, 202, 913, 1051
EcoT22I	ATGCAT	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	926
ErhI	CCWWGG	4 cut(s)	5, 202, 913, 1051
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	9 cut(s)	206, 232, 236, 322, 458, 669, 743, 911, 1055
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	3 cut(s)	184, 359, 979
FatI	CATG	9 cut(s)	202, 228, 232, 318, 454, 665, 739, 907, 1051
FblI	GTMKAC	2 cut(s)	529, 1035
FokI	GGATG	6 cut(s)	164, 260, 276, 587, 1034, 1068
FriOI	GRGCYC	1 cut(s)	926
FspBI	CTAG	2 cut(s)	464, 854
GlaI	GCGC	1 cut(s)	554
GsuI	CTGGAG	1 cut(s)	864
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	657, 738, 924
HapII	CCGG	1 cut(s)	83
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	9 cut(s)	206, 232, 236, 322, 458, 669, 743, 911, 1055
Hin6I	GCGC	1 cut(s)	553
HinP1I	GCGC	1 cut(s)	553
HincII	GTYRAC	3 cut(s)	352, 530, 1068
HindII	GTYRAC	3 cut(s)	352, 530, 1068
HinfI	GANTC	6 cut(s)	286, 953, 1013, 1027, 1082, 1109
HpaI	GTTAAC	2 cut(s)	352, 1068
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	2 cut(s)	253, 443
Hpy166II	GTNNAC	5 cut(s)	114, 352, 530, 1036, 1068
Hpy188I	TCNGA	1 cut(s)	794
Hpy188III	TCNNGA	5 cut(s)	484, 563, 708, 801, 1113
Hpy8I	GTNNAC	5 cut(s)	114, 352, 530, 1036, 1068
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	458, 565, 1110
HpyCH4III	ACNGT	3 cut(s)	358, 865, 985
HpyCH4IV	ACGT	2 cut(s)	958, 1078
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 826
HpySE526I	ACGT	2 cut(s)	958, 1078
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	9 cut(s)	206, 232, 236, 322, 458, 669, 743, 911, 1055
HspAI	GCGC	1 cut(s)	553
KspAI	GTTAAC	2 cut(s)	352, 1068
Kzo9I	GATC	2 cut(s)	328, 727
LweI	GCATC	5 cut(s)	240, 496, 508, 791, 1056
MaeI	CTAG	2 cut(s)	464, 854
MaeII	ACGT	2 cut(s)	958, 1078
MaeIII	GTNAC	3 cut(s)	208, 954, 973
MalI	GATC	2 cut(s)	330, 729
MboI	GATC	2 cut(s)	328, 727
MboII	GAAGA	3 cut(s)	628, 842, 1112
MhlI	GDGCHC	2 cut(s)	639, 926
MlsI	TGGCCA	1 cut(s)	657
MluCI	AATT	2 cut(s)	405, 795
MluNI	TGGCCA	1 cut(s)	657
MlyI	GAGTC	1 cut(s)	962
MmeI	TCCRAC	2 cut(s)	772, 927
MnlI	CCTC	4 cut(s)	142, 625, 839, 943
Mox20I	TGGCCA	1 cut(s)	657
Mph1103I	ATGCAT	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	657
MseI	TTAA	5 cut(s)	99, 279, 333, 351, 1067
MslI	CAYNNNNRTG	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	657
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	941
MvaI	CCWGG	1 cut(s)	941
MwoI	GCNNNNNNNGC	2 cut(s)	184, 826
NcoI	CCATGG	2 cut(s)	202, 1051
NdeII	GATC	2 cut(s)	328, 727
NlaIII	CATG	9 cut(s)	206, 232, 236, 322, 458, 669, 743, 911, 1055
NlaIV	GGNNCC	4 cut(s)	200, 821, 923, 924
NmuCI	GTSAC	2 cut(s)	208, 954
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	801
PfeI	GAWTC	5 cut(s)	286, 1013, 1027, 1082, 1109
PflMI	CCANNNNNTGG	1 cut(s)	946
PleI	GAGTC	1 cut(s)	961
PmaCI	CACGTG	1 cut(s)	1079
PmlI	CACGTG	1 cut(s)	1079
PpsI	GAGTC	1 cut(s)	961
Ppu21I	YACGTR	1 cut(s)	1079
PpuMI	RGGWCCY	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	939
PspCI	CACGTG	1 cut(s)	1079
PspEI	GGTNACC	1 cut(s)	973
PspGI	CCWGG	1 cut(s)	939
PspN4I	GGNNCC	4 cut(s)	200, 821, 923, 924
PspOMI	GGGCCC	1 cut(s)	922
PspPI	GGNCC	4 cut(s)	198, 669, 922, 923
PspPPI	RGGWCCY	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	528
SaqAI	TTAA	5 cut(s)	99, 279, 333, 351, 1067
Sau3AI	GATC	2 cut(s)	328, 727
Sau96I	GGNCC	4 cut(s)	198, 669, 922, 923
SchI	GAGTC	1 cut(s)	962
ScrFI	CCNGG	1 cut(s)	941
SduI	GDGCHC	2 cut(s)	639, 926
SfaNI	GCATC	5 cut(s)	240, 496, 508, 791, 1056
Sfr274I	CTCGAG	1 cut(s)	801
SinI	GGWCC	2 cut(s)	198, 669
SlaI	CTCGAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	43, 801
SmoI	CTYRAG	2 cut(s)	43, 801
Sse9I	AATT	2 cut(s)	405, 795
SsiI	CCGC	2 cut(s)	95, 427
SspMI	CTAG	2 cut(s)	464, 854
StyD4I	CCNGG	1 cut(s)	939
StyI	CCWWGG	4 cut(s)	5, 202, 913, 1051
TaaI	ACNGT	3 cut(s)	358, 865, 985
TaiI	ACGT	2 cut(s)	961, 1081
TaqI	TCGA	2 cut(s)	529, 802
TasI	AATT	2 cut(s)	405, 795
TfiI	GAWTC	5 cut(s)	286, 1013, 1027, 1082, 1109
Tru1I	TTAA	5 cut(s)	99, 279, 333, 351, 1067
Tru9I	TTAA	5 cut(s)	99, 279, 333, 351, 1067
TscAI	CASTG	2 cut(s)	399, 830
TseFI	GTSAC	2 cut(s)	208, 954
Tsp45I	GTSAC	2 cut(s)	208, 954
TspDTI	ATGAA	2 cut(s)	278, 654
TspRI	CASTG	2 cut(s)	399, 830
Van91I	CCANNNNNTGG	1 cut(s)	946
VpaK11BI	GGWCC	2 cut(s)	198, 669
XapI	RAATTY	1 cut(s)	795
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XhoI	CTCGAG	1 cut(s)	801
XmiI	GTMKAC	2 cut(s)	529, 1035
XspI	CTAG	2 cut(s)	464, 854
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.