Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007586

Physical Location & Seq

Genomic Coordinates Forward (+)

16251849 .. 16258664

Gene Structure 6816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G148800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCCTTGGTGGGATTTGGGATCGCTTTCTCGTCTTAAAAACTTCAGTGGCCTCTTTCAGGATGTGTCAAGCAAGAAGCCGGAGATTTCTGCTGTTAATAGTGATTCATTTACACCCATTGACCTTCCATTGATAGGACACAGGGAGGATGAGAATAAAATGCAGGAAGTTCAGCTTGGTTCGCATACTGTAAGGTCCCATGGGATGACAGTTGCAAGGACACACATGCATGATTGGGTGATACTAATGCTTCTTGGGTTGATAGTTGTCATCCTGAATGTGATTCATCCCTTTTATCGCTTTGTTGGAAAAGATATGATGACTGATCTTAAATATCCCTTGAAAAGTAACACAGTGCCTGTTTGGGCCATTCCTATGTATGCAGTTGCACTGCCCATAGCAATTTTTTTCATTGTCTATTTTCGTAGGAGAGACGTCTATGACCTTCACCATGCCATACTAGGTCTCTTATTCTCTGTTCTGATAACTGGGGTTATTACAGATGCTATAAAAGATGCAGTTGGTCGACCCCGGCCAGACTTCTTTTGGCGCTGTTTTCCAGATGGAAAGGATGTGTACGATCAATTGGGAAATGTTGTATGCCATGGTAAGAAGAGTGTCATAAAGGAGGGGCACAAGAGTTTTCCAAGTGGCCATACTTCGTGGTCCTTTGCTGGTCTAGGATTTCTCTCACTGTATTTGTCGGGAAAAATAAAAGTATTTGACCGCAAAGGCCATGTCGCAAAGCTATGCATTGTTTTTCTTCCTCTACTTTTTGCATCACTAGTCGGCGTTTCTCGTGTAGATGACTACTGGCACCACTGGCAGGACGTGTTTGCTGGAGGTCTCCTAGGATTTATAGTTGCTTCATTTTGCTATCTGCAGTTCTTTCCACCCCCATATCATGCTCAAGGTTGGGGCCCTTATGCTTACTTCCAGGTGTTGGAGGAGTCACGTTCGGTGACACAAGCAGCCACTATAGTAAATGGGTCCAATGTGCAGGTCACAGAGGCTCGGGTTGAAAATCAAGAAGACGAAACTAGCATCCATGGATGCATGGGGTTATCATTAGCACATAATTCTGGTTCAGCGTTGGAAGAACTGGAATCTGGGAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0044425 GO:0044459 GO:0044464 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

374

Amino Acids

41.94

Weight (kDa)

6.99

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007586)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600 AT3G02600
malus_domestica	MD09G1256800.v1.1 MD17G1250400.v1.1
prunus_persica	Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1 Prupe.3G148800_v2.0.a1
pyrus_communis	pycom09g17240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
Acc36I	ACCTGC	1 cut(s)	991
AccB1I	GGYRCC	1 cut(s)	816
AccB7I	CCANNNNNTGG	1 cut(s)	943
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	533, 652
AcuI	CTGAAG	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	4 cut(s)	58, 134, 826, 943
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	2 cut(s)	343, 1022
AhlI	ACTAGT	1 cut(s)	784
AjiI	CACGTC	1 cut(s)	832
AjnI	CCWGG	1 cut(s)	936
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	2 cut(s)	175, 748
AluI	AGCT	2 cut(s)	175, 748
Alw26I	GTCTC	3 cut(s)	426, 470, 851
AlwI	GGATC	1 cut(s)	28
AlwNI	CAGNNNCTG	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	1014
AoxI	GGCC	6 cut(s)	49, 366, 533, 652, 733, 919
ApaI	GGGCCC	1 cut(s)	923
ApeKI	GCWGC	1 cut(s)	971
ArsI	GACNNNNNNTTYG	2 cut(s)	723, 755
AspA2I	CCTAGG	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	6 cut(s)	195, 366, 666, 919, 920, 990
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	3 cut(s)	250, 440, 973
AvaI	CYCGRG	1 cut(s)	1014
AvaII	GGWCC	3 cut(s)	195, 666, 990
AvrII	CCTAGG	1 cut(s)	850
BaeGI	GKGCMC	2 cut(s)	636, 923
BalI	TGGCCA	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	923
BauI	CACGAG	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	1038
BbvI	GCAGC	1 cut(s)	983
BccI	CCATC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	938
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	3 cut(s)	426, 470, 851
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	5 cut(s)	461, 680, 785, 851, 1041
BfmI	CTRYAG	2 cut(s)	881, 978
BfoI	RGCGCY	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	991
BisI	GCNGC	1 cut(s)	972
BlnI	CCTAGG	1 cut(s)	850
BlsI	GCNGC	1 cut(s)	973
Bme1390I	CCNGG	2 cut(s)	532, 938
Bme18I	GGWCC	3 cut(s)	195, 666, 990
BmeT110I	CYCGRG	1 cut(s)	1014
BmgBI	CACGTC	1 cut(s)	832
BmgT120I	GGNCC	6 cut(s)	195, 366, 666, 919, 920, 990
BmiI	GGNNCC	5 cut(s)	197, 818, 920, 921, 991
BmrFI	CCNGG	2 cut(s)	532, 938
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	5 cut(s)	493, 505, 788, 1043, 1053
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	1 cut(s)	861
BpuEI	CTTGAG	1 cut(s)	894
BpuMI	CCSGG	1 cut(s)	532
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	2 cut(s)	470, 851
BsaJI	CCNNGG	6 cut(s)	5, 199, 530, 604, 850, 1048
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 134, 826, 943
Bse1I	ACTGG	4 cut(s)	493, 818, 827, 1107
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	6 cut(s)	5, 199, 530, 604, 850, 1048
BseGI	GGATG	8 cut(s)	67, 154, 210, 270, 286, 577, 1044, 1058
BseLI	CCNNNNNNNGG	4 cut(s)	58, 134, 826, 943
BseNI	ACTGG	4 cut(s)	493, 818, 827, 1107
BseRI	GAGGAG	1 cut(s)	962
BseSI	GKGCMC	2 cut(s)	636, 923
BseXI	GCAGC	1 cut(s)	983
BsgI	GTGCAG	1 cut(s)	1019
BshFI	GGCC	6 cut(s)	51, 368, 535, 654, 735, 921
BshNI	GGYRCC	1 cut(s)	816
BsiHKCI	CYCGRG	1 cut(s)	1014
BsiSI	CCGG	2 cut(s)	80, 532
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	4 cut(s)	58, 134, 826, 943
BsmAI	GTCTC	3 cut(s)	426, 470, 851
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	6 cut(s)	51, 368, 535, 654, 735, 921
Bso31I	GGTCTC	2 cut(s)	470, 851
BsoBI	CYCGRG	1 cut(s)	1014
Bsp120I	GGGCCC	1 cut(s)	919
Bsp1286I	GDGCHC	2 cut(s)	636, 923
Bsp143I	GATC	3 cut(s)	20, 325, 580
Bsp19I	CCATGG	3 cut(s)	199, 604, 1048
BspACI	CCGC	1 cut(s)	727
BspANI	GGCC	6 cut(s)	51, 368, 535, 654, 735, 921
BspLI	GGNNCC	5 cut(s)	197, 818, 920, 921, 991
BspMAI	CTGCAG	1 cut(s)	885
BspMI	ACCTGC	1 cut(s)	991
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	816
BspTNI	GGTCTC	2 cut(s)	470, 851
BsrI	ACTGG	4 cut(s)	493, 818, 827, 1107
BssECI	CCNNGG	6 cut(s)	5, 199, 530, 604, 850, 1048
BssMI	GATC	3 cut(s)	20, 325, 580
BssNI	GRCGYC	1 cut(s)	435
BssSI	CACGAG	1 cut(s)	798
BssT1I	CCWWGG	5 cut(s)	5, 199, 604, 850, 1048
Bst2BI	CACGAG	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	4 cut(s)	190, 211, 355, 696
Bst6I	CTCTTC	1 cut(s)	608
BstACI	GRCGYC	1 cut(s)	435
BstDSI	CCRYGG	3 cut(s)	199, 604, 1048
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	8 cut(s)	67, 154, 210, 270, 286, 577, 1044, 1058
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	3 cut(s)	23, 328, 583
BstMAI	GTCTC	3 cut(s)	426, 470, 851
BstMBI	GATC	3 cut(s)	20, 325, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 823
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	530, 936
BstSFI	CTRYAG	2 cut(s)	881, 978
BstSLI	GKGCMC	2 cut(s)	636, 923
BstV1I	GCAGC	1 cut(s)	983
BstV2I	GAAGAC	1 cut(s)	1038
BsuRI	GGCC	6 cut(s)	51, 368, 535, 654, 735, 921
BtgI	CCRYGG	3 cut(s)	199, 604, 1048
BtrI	CACGTC	1 cut(s)	832
BtsCI	GGATG	8 cut(s)	67, 154, 210, 270, 286, 577, 1044, 1058
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	5 cut(s)	52, 360, 389, 692, 820
BveI	ACCTGC	1 cut(s)	991
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	552
Cfr13I	GGNCC	6 cut(s)	195, 366, 666, 919, 920, 990
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	9 cut(s)	200, 226, 230, 452, 605, 737, 905, 1049, 1057
CviQI	GTAC	1 cut(s)	577
DpnI	GATC	3 cut(s)	22, 327, 582
DpnII	GATC	3 cut(s)	20, 325, 580
EaeI	YGGCCR	2 cut(s)	533, 652
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco130I	CCWWGG	5 cut(s)	5, 199, 604, 850, 1048
Eco24I	GRGCYC	1 cut(s)	923
Eco31I	GGTCTC	2 cut(s)	470, 851
Eco47I	GGWCC	3 cut(s)	195, 666, 990
Eco57I	CTGAAG	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	1014
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO109I	RGGNCCY	3 cut(s)	195, 919, 920
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	5 cut(s)	5, 199, 604, 850, 1048
EcoT22I	ATGCAT	3 cut(s)	231, 755, 1058
EcoT38I	GRGCYC	1 cut(s)	923
ErhI	CCWWGG	5 cut(s)	5, 199, 604, 850, 1048
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	9 cut(s)	203, 229, 233, 455, 608, 740, 908, 1052, 1060
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	9 cut(s)	199, 225, 229, 451, 604, 736, 904, 1048, 1056
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	972
FokI	GGATG	8 cut(s)	74, 161, 217, 257, 273, 584, 1031, 1065
FriOI	GRGCYC	1 cut(s)	923
Fsp4HI	GCNGC	1 cut(s)	972
FspBI	CTAG	5 cut(s)	461, 680, 785, 851, 1041
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	1 cut(s)	972
GsuI	CTGGAG	1 cut(s)	861
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	6 cut(s)	51, 368, 535, 654, 735, 921
HapII	CCGG	2 cut(s)	80, 532
HhaI	GCGC	1 cut(s)	552
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	9 cut(s)	203, 229, 233, 455, 608, 740, 908, 1052, 1060
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HinfI	GANTC	4 cut(s)	104, 283, 950, 1106
HpaII	CCGG	2 cut(s)	80, 532
HphI	GGTGA	3 cut(s)	250, 440, 973
Hpy166II	GTNNAC	2 cut(s)	527, 577
Hpy188I	TCNGA	1 cut(s)	483
Hpy188III	TCNNGA	5 cut(s)	59, 274, 560, 705, 1028
Hpy8I	GTNNAC	2 cut(s)	527, 577
HpyAV	CCTTC	2 cut(s)	134, 455
HpyCH4III	ACNGT	4 cut(s)	190, 211, 355, 696
HpyCH4IV	ACGT	3 cut(s)	435, 831, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 823
HpySE526I	ACGT	3 cut(s)	435, 831, 955
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	9 cut(s)	203, 229, 233, 455, 608, 740, 908, 1052, 1060
HspAI	GCGC	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	20, 325, 580
Lsp1109I	GCAGC	1 cut(s)	983
LweI	GCATC	5 cut(s)	493, 505, 788, 1043, 1053
MaeI	CTAG	5 cut(s)	461, 680, 785, 851, 1041
MaeII	ACGT	3 cut(s)	435, 831, 955
MaeIII	GTNAC	4 cut(s)	347, 951, 961, 1003
MalI	GATC	3 cut(s)	22, 327, 582
MboI	GATC	3 cut(s)	20, 325, 580
MboII	GAAGA	4 cut(s)	625, 755, 1043, 1109
MfeI	CAATTG	1 cut(s)	584
MhlI	GDGCHC	2 cut(s)	636, 923
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	3 cut(s)	402, 584, 1078
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	1 cut(s)	959
MmeI	TCCRAC	3 cut(s)	286, 924, 1074
MnlI	CCTC	8 cut(s)	62, 139, 622, 777, 836, 940, 1003, 1107
Mox20I	TGGCCA	1 cut(s)	654
Mph1103I	ATGCAT	3 cut(s)	231, 755, 1058
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	3 cut(s)	36, 96, 330
MslI	CAYNNNNRTG	2 cut(s)	228, 374
Msp20I	TGGCCA	1 cut(s)	654
MspI	CCGG	2 cut(s)	80, 532
MspR9I	CCNGG	2 cut(s)	532, 938
MunI	CAATTG	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	2 cut(s)	181, 823
NciI	CCSGG	1 cut(s)	532
NcoI	CCATGG	3 cut(s)	199, 604, 1048
NdeII	GATC	3 cut(s)	20, 325, 580
NlaIII	CATG	9 cut(s)	203, 229, 233, 455, 608, 740, 908, 1052, 1060
NlaIV	GGNNCC	5 cut(s)	197, 818, 920, 921, 991
NmuCI	GTSAC	3 cut(s)	951, 961, 1003
NsiI	ATGCAT	3 cut(s)	231, 755, 1058
NspI	RCATGY	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	104, 283, 1106
PflMI	CCANNNNNTGG	1 cut(s)	943
PkrI	GCNGC	1 cut(s)	973
PleI	GAGTC	1 cut(s)	958
PpsI	GAGTC	1 cut(s)	958
PpuMI	RGGWCCY	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	5 cut(s)	197, 818, 920, 921, 991
PspOMI	GGGCCC	1 cut(s)	919
PspPI	GGNCC	6 cut(s)	195, 366, 666, 919, 920, 990
PspPPI	RGGWCCY	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	885
PstNI	CAGNNNCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
RseI	CAYNNNNRTG	2 cut(s)	228, 374
SalI	GTCGAC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	36, 96, 330
SatI	GCNGC	1 cut(s)	972
Sau3AI	GATC	3 cut(s)	20, 325, 580
Sau96I	GGNCC	6 cut(s)	195, 366, 666, 919, 920, 990
SchI	GAGTC	1 cut(s)	959
ScrFI	CCNGG	2 cut(s)	532, 938
SduI	GDGCHC	2 cut(s)	636, 923
SfaNI	GCATC	5 cut(s)	493, 505, 788, 1043, 1053
SfcI	CTRYAG	2 cut(s)	881, 978
SinI	GGWCC	3 cut(s)	195, 666, 990
SmiMI	CAYNNNNRTG	2 cut(s)	228, 374
SmlI	CTYRAG	1 cut(s)	909
SmoI	CTYRAG	1 cut(s)	909
SpeI	ACTAGT	1 cut(s)	784
Sse9I	AATT	3 cut(s)	402, 584, 1078
SsiI	CCGC	1 cut(s)	727
SspMI	CTAG	5 cut(s)	461, 680, 785, 851, 1041
StyD4I	CCNGG	2 cut(s)	530, 936
StyI	CCWWGG	5 cut(s)	5, 199, 604, 850, 1048
TaaI	ACNGT	4 cut(s)	190, 211, 355, 696
TaiI	ACGT	3 cut(s)	438, 834, 958
TaqI	TCGA	1 cut(s)	526
TasI	AATT	3 cut(s)	402, 584, 1078
TfiI	GAWTC	3 cut(s)	104, 283, 1106
Tru1I	TTAA	3 cut(s)	36, 96, 330
Tru9I	TTAA	3 cut(s)	36, 96, 330
TscAI	CASTG	5 cut(s)	52, 360, 396, 699, 827
TseFI	GTSAC	3 cut(s)	951, 961, 1003
TseI	GCWGC	1 cut(s)	971
Tsp45I	GTSAC	3 cut(s)	951, 961, 1003
TspDTI	ATGAA	4 cut(s)	96, 275, 400, 858
TspRI	CASTG	5 cut(s)	52, 360, 396, 699, 827
Van91I	CCANNNNNTGG	1 cut(s)	943
VpaK11BI	GGWCC	3 cut(s)	195, 666, 990
XagI	CCTNNNNNAGG	1 cut(s)	56
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmaJI	CCTAGG	1 cut(s)	850
XmiI	GTMKAC	1 cut(s)	526
XspI	CTAG	5 cut(s)	461, 680, 785, 851, 1041
ZraI	GACGTC	1 cut(s)	436
Zsp2I	ATGCAT	3 cut(s)	231, 755, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.