Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006618

Physical Location & Seq

Genomic Coordinates Reverse (-)

570134 .. 572386

Gene Structure 2253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGCATATGCAACAGGAATAACGTTTGCCTCAAGGAGTATTTTGCCTATTTGTTCCAGAACCTTCTTATCTCCCTTGCGTGTCGCTTCTTTACTCGTCTTTCCTGAGAAATCATCTGCAACTTTCTTCAGAAGGGTCCAAGTTCCTCACCTTTTTTCCACTTCTACTACTACTCTGTTCTCTTCTGTTAAGTGTTCAATTCATTCTACTTCATCTCCTGAGACAGAGAATCAAGCTGTTTTTCGCCCTAATGTAGTCGATATACTTGAAGAAAGAGGTCTCCTCGAGTCAATCACAAGCGAGAATCTCAGGTCAGCTTGTTCTGATCCTAAAGTAGCTCCTTTAAGGGTCTACTGTGGGTTTGATCCAACGGCTGAGAGTTTACACTTGGGTAATCTACTTGGTATCATTGTGCTTTCTTGGTTCCAAAGATGTGGACATCAAGCCGTTGGTTTAATTGGTGGTGCCACGGGACGGGTTGGTGACCCATCTGGTAAAAGCTTAGAAAGACCTGAGCTTGACGCTGATACACTGGAGAAAAATATTGCGGGGATTACAAAAATCATTATCAAGATTCTAGGTAGTAATCCGAGTCCCGGTGGCTCTTACGTGATTTTTAATAACTATGACTGGTGGAAAGATATGACAATGCTCGACTTTCTGAACAAAGTCGGTAGGTTTGCTAGGGTTGGTACTATGATGGCAAAGGAGAGTGTGAAGAAGAGATTAGAATCAGAGCAAGGTATGAGCTACACCGAGTTCACTTATCAGTTGTTGCAAGCCTATGATTTTCTTCACCTGTTCAAGAACGAAGGGATCAATGTTCAGATAGGTGGCAGTGATCAATGGGGGAATATAACAGCTGGAACTGATTTGATCAGGAAGATTCTCCAAGCAGAAGAAGCGGCTTACGGGCTAACATTTCCTCTCCTACTGAAAAACGATGGAACGAAATTCGGGAAATCAGAAGATGGAGCAATCTGGCTATCTCCTTCGATGTTATCGCCTTATAAGTTCTATCAGTACTTCTTTTCAGTTCCAGACGTTGATGTGATACGCTTCTTAAAGACATTAACATTTCTGAGCTTGGATGAGATAAAGATCTTGGAAGATCAAATGAGCAAACCCGGCTATGTTCCCAACACCGCACAAATCAAACTCGCTGAAGAAGTAACCAGATTCGTACATGGCGAAGAGGGTTTGAAAGAAGCCATTAAAGCAACAGAAGCTTTAAGACCAGGTGCTGAGACAAAGCTTGATTGGAACTTGATTGAGAGAATAGCAGAGGATATACCTTCTTGCTCACTGCCTATTGATCGAGTGTCGGGTTTATCGATTGTGGATCTATCGGTTTCTGCAGGTTTGTTTGAGAGCAAATCTGCTGCGAGGAGAATGTTGAAGCAAGGTGGGTTTTATATGAACAATGAGAGAGTTGATGATGAGAATAAGAGAGTGGACGAAGAGGATATTGTTGAAGGGAGAGGTCTTGTTCTATCAGCAGGCAAGAAGAATAAAGTGGTCGTTAGAATTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016874 GO:0016875 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

S4 tRNA-synt_1b

Protein Analysis

511

Amino Acids

56.62

Weight (kDa)

6.02

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	113 - 410	1.7e-76	tRNA synthetases class I (W and Y)
SYY_C-terminal	PF22421	424 - 505	4.1e-12	Tyrosine--tRNA ligase SYY-like C-terminal domain
S4	PF01479	452 - 491	2e-07	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02660 AT3G02660
fragaria_vesca	FvH4_5g28930 FvH4_5g28930 FvH4_6g39550
malus_domestica	MD08G1236200.v1.1 MD15G1428200.v1.1
prunus_persica	Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221241
rosa_laevigata	RLG00000002167
rosa_multiflora	Rmu_sc0000324.1_g000017 Rmu_sc0032411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00238530
rosa_rugosa	Rorug07G0201700
rosa_samantha	Rh7AG340600 Rh7BG331800 Rh7CG358500 Rh7DG339400
rosa_wichuraiana	Rw7G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1011
Acc36I	ACCTGC	1 cut(s)	1349
AccB1I	GGYRCC	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	3 cut(s)	548, 905, 1146
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	4 cut(s)	320, 359, 824, 1350
AcsI	RAATTY	2 cut(s)	953, 1527
AcuI	CTGAAG	2 cut(s)	112, 1185
AfaI	GTAC	3 cut(s)	694, 1025, 1185
AfiI	CCNNNNNNNGG	2 cut(s)	474, 596
AgsI	TTSAA	6 cut(s)	198, 269, 805, 1204, 1399, 1475
AjnI	CCWGG	1 cut(s)	1237
Alw26I	GTCTC	3 cut(s)	215, 284, 1241
AlwI	GGATC	4 cut(s)	320, 359, 824, 1350
AlwNI	CAGNNNCTG	1 cut(s)	1244
Ama87I	CYCGRG	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	1382
ApoI	RAATTY	2 cut(s)	953, 1527
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	2 cut(s)	597, 1128
AsuHPI	GGTGA	3 cut(s)	140, 494, 788
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	1369
BccI	CCATC	4 cut(s)	496, 694, 938, 965
BceAI	ACGGC	2 cut(s)	387, 431
BciT130I	CCWGG	1 cut(s)	1239
BclI	TGATCA	2 cut(s)	841, 876
BcnI	CCSGG	2 cut(s)	597, 1128
BcoDI	GTCTC	3 cut(s)	215, 284, 1241
BfaI	CTAG	2 cut(s)	578, 684
BfmI	CTRYAG	1 cut(s)	1356
BfuAI	ACCTGC	1 cut(s)	1349
BglII	AGATCT	1 cut(s)	1101
BisI	GCNGC	2 cut(s)	906, 1383
BlsI	GCNGC	2 cut(s)	907, 1384
BmcAI	AGTACT	1 cut(s)	1025
Bme1390I	CCNGG	3 cut(s)	597, 1128, 1239
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	3 cut(s)	137, 425, 466
BmrFI	CCNGG	3 cut(s)	597, 1128, 1239
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	16
BpuMI	CCSGG	2 cut(s)	597, 1128
Bsa29I	ATCGAT	1 cut(s)	1334
BsaAI	YACGTR	1 cut(s)	610
BsaBI	GATNNNNATC	2 cut(s)	730, 1100
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 596
Bse1I	ACTGG	2 cut(s)	537, 635
Bse8I	GATNNNNATC	2 cut(s)	730, 1100
BseBI	CCWGG	1 cut(s)	1239
BseCI	ATCGAT	1 cut(s)	1334
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	1096
BseJI	GATNNNNATC	2 cut(s)	730, 1100
BseLI	CCNNNNNNNGG	2 cut(s)	474, 596
BseMII	CTCAG	7 cut(s)	96, 210, 322, 366, 504, 1073, 1236
BseNI	ACTGG	2 cut(s)	537, 635
BseRI	GAGGAG	2 cut(s)	272, 1402
BseXI	GCAGC	1 cut(s)	1369
BshNI	GGYRCC	1 cut(s)	464
BshVI	ATCGAT	1 cut(s)	1334
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	597, 1128
BslFI	GGGAC	2 cut(s)	486, 579
BslI	CCNNNNNNNGG	2 cut(s)	474, 596
BsmAI	GTCTC	3 cut(s)	215, 284, 1241
BsmFI	GGGAC	2 cut(s)	486, 579
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	284
Bsp143I	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
BspACI	CCGC	3 cut(s)	548, 905, 1146
BspCNI	CTCAG	7 cut(s)	97, 211, 321, 367, 505, 1074, 1237
BspDI	ATCGAT	1 cut(s)	1334
BspLI	GGNNCC	3 cut(s)	137, 425, 466
BspMAI	CTGCAG	1 cut(s)	1360
BspMI	ACCTGC	1 cut(s)	1349
BspPI	GGATC	4 cut(s)	320, 359, 824, 1350
BspT107I	GGYRCC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	537, 635
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
Bst2UI	CCWGG	1 cut(s)	1239
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	4 cut(s)	187, 716, 1188, 1455
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	780, 1501
BstDEI	CTNAG	8 cut(s)	105, 219, 308, 375, 502, 513, 1082, 1245
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	1096
BstKTI	GATC	9 cut(s)	328, 367, 819, 844, 879, 1104, 1114, 1318, 1345
BstMAI	GTCTC	3 cut(s)	215, 284, 1241
BstMBI	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
BstMWI	GCNNNNNNNGC	4 cut(s)	902, 1128, 1217, 1226
BstNI	CCWGG	1 cut(s)	1239
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	595, 1126, 1237
BstSFI	CTRYAG	1 cut(s)	1356
BstV1I	GCAGC	1 cut(s)	1369
BstX2I	RGATCY	2 cut(s)	1101, 1342
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	2 cut(s)	1101, 1342
Bsu15I	ATCGAT	1 cut(s)	1334
BsuTUI	ATCGAT	1 cut(s)	1334
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	1096
BtsI	GCAGTG	2 cut(s)	844, 1304
BtsIMutI	CAGTG	3 cut(s)	530, 844, 1304
BveI	ACCTGC	1 cut(s)	1349
Cac8I	GCNNGC	2 cut(s)	780, 1501
CaiI	CAGNNNCTG	1 cut(s)	1244
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	1334
CseI	GACGC	1 cut(s)	530
CsiI	ACCWGGT	1 cut(s)	1237
Csp6I	GTAC	3 cut(s)	693, 1024, 1184
CviAII	CATG	1 cut(s)	1187
CviQI	GTAC	3 cut(s)	693, 1024, 1184
DdeI	CTNAG	8 cut(s)	105, 219, 308, 375, 502, 513, 1082, 1245
DpnI	GATC	9 cut(s)	327, 366, 818, 843, 878, 1103, 1113, 1317, 1344
DpnII	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
Eam1104I	CTCTTC	4 cut(s)	187, 716, 1188, 1455
EarI	CTCTTC	4 cut(s)	187, 716, 1188, 1455
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	112, 1185
Eco88I	CYCGRG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	1237
FaeI	CATG	1 cut(s)	1190
FaqI	GGGAC	2 cut(s)	486, 579
FatI	CATG	1 cut(s)	1186
FauI	CCCGC	1 cut(s)	541
FauNDI	CATATG	1 cut(s)	7
FbaI	TGATCA	2 cut(s)	841, 876
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	906, 1383
FokI	GGATG	1 cut(s)	1103
Fsp4HI	GCNGC	2 cut(s)	906, 1383
FspBI	CTAG	2 cut(s)	578, 684
GluI	GCNGC	2 cut(s)	906, 1383
GsuI	CTGGAG	1 cut(s)	554
HapII	CCGG	2 cut(s)	597, 1128
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	1 cut(s)	1190
HindIII	AAGCTT	3 cut(s)	499, 1227, 1253
HinfI	GANTC	8 cut(s)	229, 287, 304, 574, 592, 731, 886, 1179
HpaII	CCGG	2 cut(s)	597, 1128
HphI	GGTGA	3 cut(s)	140, 494, 788
Hpy166II	GTNNAC	5 cut(s)	352, 383, 437, 762, 1456
Hpy188I	TCNGA	8 cut(s)	131, 325, 591, 663, 736, 828, 967, 1083
Hpy188III	TCNNGA	9 cut(s)	57, 104, 218, 571, 805, 880, 958, 1040, 1533
Hpy8I	GTNNAC	5 cut(s)	352, 383, 437, 762, 1456
HpyAV	CCTTC	6 cut(s)	73, 126, 806, 1002, 1305, 1469
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	3 cut(s)	23, 609, 1044
HpyCH4V	TGCA	4 cut(s)	11, 119, 778, 1358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	902, 1128, 1217, 1226
HpyF3I	CTNAG	8 cut(s)	105, 219, 308, 375, 502, 513, 1082, 1245
HpySE526I	ACGT	3 cut(s)	23, 609, 1044
Hsp92II	CATG	1 cut(s)	1190
Ksp22I	TGATCA	2 cut(s)	841, 876
Kzo9I	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
LmnI	GCTCC	2 cut(s)	343, 974
Lsp1109I	GCAGC	1 cut(s)	1369
MabI	ACCWGGT	1 cut(s)	1237
MaeI	CTAG	2 cut(s)	578, 684
MaeII	ACGT	3 cut(s)	23, 609, 1044
MaeIII	GTNAC	2 cut(s)	482, 1171
MalI	GATC	9 cut(s)	327, 366, 818, 843, 878, 1103, 1113, 1317, 1344
MboI	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
MflI	RGATCY	2 cut(s)	1101, 1342
MluCI	AATT	4 cut(s)	198, 456, 953, 1527
MlyI	GAGTC	2 cut(s)	296, 601
MmeI	TCCRAC	1 cut(s)	392
MseI	TTAA	8 cut(s)	189, 344, 455, 618, 1064, 1073, 1215, 1232
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	2 cut(s)	597, 1128
MspR9I	CCNGG	3 cut(s)	597, 1128, 1239
MvaI	CCWGG	1 cut(s)	1239
MwoI	GCNNNNNNNGC	4 cut(s)	902, 1128, 1217, 1226
NciI	CCSGG	2 cut(s)	597, 1128
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
NlaIII	CATG	1 cut(s)	1190
NlaIV	GGNNCC	3 cut(s)	137, 425, 466
NmuCI	GTSAC	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	2 cut(s)	1188, 1331
PfeI	GAWTC	6 cut(s)	229, 304, 574, 731, 886, 1179
PkrI	GCNGC	2 cut(s)	907, 1384
PleI	GAGTC	2 cut(s)	295, 600
PpsI	GAGTC	2 cut(s)	295, 600
Ppu21I	YACGTR	1 cut(s)	610
PsiI	TTATAA	1 cut(s)	1011
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	1237
PspEI	GGTNACC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	1237
PspN4I	GGNNCC	3 cut(s)	137, 425, 466
PspPI	GGNCC	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	1360
PstNI	CAGNNNCTG	1 cut(s)	1244
PsuI	RGATCY	2 cut(s)	1101, 1342
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	3 cut(s)	694, 1025, 1185
RsaNI	GTAC	3 cut(s)	693, 1024, 1184
SaqAI	TTAA	8 cut(s)	189, 344, 455, 618, 1064, 1073, 1215, 1232
SatI	GCNGC	2 cut(s)	906, 1383
Sau3AI	GATC	9 cut(s)	325, 364, 816, 841, 876, 1101, 1111, 1315, 1342
Sau96I	GGNCC	1 cut(s)	136
ScaI	AGTACT	1 cut(s)	1025
SchI	GAGTC	2 cut(s)	296, 601
ScrFI	CCNGG	3 cut(s)	597, 1128, 1239
SexAI	ACCWGGT	1 cut(s)	1237
SfcI	CTRYAG	1 cut(s)	1356
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	31, 284
SmoI	CTYRAG	2 cut(s)	31, 284
Sse9I	AATT	4 cut(s)	198, 456, 953, 1527
SsiI	CCGC	3 cut(s)	548, 905, 1146
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	2 cut(s)	578, 684
StyD4I	CCNGG	3 cut(s)	595, 1126, 1237
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	3 cut(s)	26, 612, 1047
TaqI	TCGA	6 cut(s)	258, 285, 654, 995, 1318, 1334
TasI	AATT	4 cut(s)	198, 456, 953, 1527
TatI	WGTACW	1 cut(s)	1023
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	6 cut(s)	229, 304, 574, 731, 886, 1179
Tru1I	TTAA	8 cut(s)	189, 344, 455, 618, 1064, 1073, 1215, 1232
Tru9I	TTAA	8 cut(s)	189, 344, 455, 618, 1064, 1073, 1215, 1232
TscAI	CASTG	3 cut(s)	537, 844, 1311
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	1 cut(s)	1382
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	191, 201, 1433
TspRI	CASTG	3 cut(s)	537, 844, 1311
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	2 cut(s)	953, 1527
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	578, 684
ZrmI	AGTACT	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.