FvH4_6g39550

tyrosine--tRNA

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
31233797 .. 31236542
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39550.t1

Sequence Viewer

Length: 1449 bp
ATGAATATGAGAATGGCTGCTGTCACCACTTCAAGGGCTTTTTTATTCTCCCATCATTACTATAGCCTCCCATTATGTGTTCCTTCTTTCTTCAGGGTTCCCAGATTTCACCGTAACCCCATCCTCTTATCGGCTGTCAAGTGTTTGCAGTCCTCTTCCGGGCGTCAAAATGTGGTTGACATTTTGGAAGAAAGAGGATTGCTTGAGTCCTTGACCAGCGAGCAGCTGAGGCATGCCTGCTCCGACCCTAGTATCCCTCCTCTTAAGGTCTATTGCGGCTTTGACCCAACCGCTGAGTCATTGCACTTAGGAAACCTTCTTGGCCTTATAGTCCTCTCATGGTTCCAAAAATGTGGCCATCAGACTGTAGCTCTGATTGGCGGGGCCACTGCCCGTGTTGGAGACCCTTCAGGCAAGAGTTTGGAGAGGCCAGAGCTTGATCTGGAGACTTTGTCACGAAACACCTCAGGTATTAGCAATACCGTTGGGAAAATTTTGGGGTCCAGCGGGGTTTCCATCTTCAACAATTATGATTGGTGGAAAGAGGTTAGATTGCTGGATTTTCTGAAAGATGTGGGTCGGTTTGCGAGGGTGGGGAGCATGATGGCCAAGGAGAGTGTTAAGAAGAGGTTGGAATCAGAACAAGGAATGAGCTACACAGAGTTCACATACCAGTTGTTGCAGGGTTATGATTTCCTCTACCTCTTCCGCAGTGAAGGCGTCAATGTTCAGATTGGAGGTAGCGATCAATGGGGAAATATAACTGCAGGGACCGAACTCATACGGAAGATTCTTCGGGCAGATGATGCGGCTTACGGCCTGACATTCCGTCTTCTCTTAAAGAGCGATGGCACCAAGTTTGGCAAGTCTGAAGATGGTGCCATATGGCTTTCCCCATCCATGTTGTCTCCCTACAAGTTCTATCAGTATTTCTTCTCCGTTTCAGATGCTGATGTCGTCAGATTCCTCAAGATTCTAACTTTCCTGGACATGAACGACATCAGACAGATAGAGAGTGACATGAAGAGACCTGGATACCTGCCCAACACAGCACAGCGCAGGCTTGCTGAAGAGGTTACTCGTTTTGTCCACGGTCAAGATGGTCTAGATGAAGCTCTCAAAGCAACTGAAGCAATGAGGCCGGGAGCTGACACTAAATTAGACTGGAAAACTATGCAAGCCATTTCTGAGGATGTCCCCTCCTGCTCTTTCCCTTATCATCAGGTCCTTGATCTTTCTGTTGTTGATCTTTCAGTGTCGTCCGGTTTGTTTGACAGCAAATCAGCTGCCCGACGTCTATTGAAGCAAGGGGGGCTTTACTTGAACAACTCAAGAGTTGATAGTGAAAGTAAGAGAATTGAACCACAAGACGTTGTGGATGGAAAACTTCTCCTTTTGTCTGCAGGCAAGAAGAACAAGGTTCTTGTACGGATATCAAGTAGCAGCTGA

Protein Analysis

483

Amino Acids

53.78

Weight (kDa)

8.56

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 87 - 378 1.5e-76 tRNA synthetases class I (W and Y)
SYY_C-terminal PF22421 394 - 476 3.6e-10 Tyrosine--tRNA ligase SYY-like C-terminal domain
S4 PF01479 420 - 459 1.2e-06 S4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1297
Acc36I ACCTGC 1 cut(s) 1047
AccB1I GGYRCC 2 cut(s) 851, 878
AciI CCGC 6 cut(s) 276, 291, 381, 507, 709, 809
AcoI YGGCCR 2 cut(s) 355, 606
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 5 cut(s) 76, 393, 891, 1089, 1149
AcyI GRCGYC 3 cut(s) 163, 720, 1294
AfaI GTAC 1 cut(s) 1428
AfiI CCNNNNNNNGG 3 cut(s) 33, 130, 159
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 5 cut(s) 33, 523, 1303, 1324, 1361
AhdI GACNNNNNGTC 1 cut(s) 828
AjnI CCWGG 2 cut(s) 984, 1030
AluBI AGCT 8 cut(s) 226, 371, 436, 654, 1115, 1148, 1286, 1446
AluI AGCT 8 cut(s) 226, 371, 436, 654, 1115, 1148, 1286, 1446
Alw26I GTCTC 4 cut(s) 396, 440, 912, 1021
AlwNI CAGNNNCTG 1 cut(s) 950
AoxI GGCC 7 cut(s) 322, 355, 384, 428, 606, 817, 1139
ApeKI GCWGC 4 cut(s) 17, 223, 1286, 1443
ApoI RAATTY 1 cut(s) 492
AspLEI GCGC 1 cut(s) 1059
AspS9I GGNCC 4 cut(s) 384, 501, 771, 1225
AsuC2I CCSGG 2 cut(s) 160, 1143
AsuHPI GGTGA 2 cut(s) 16, 101
AvaII GGWCC 3 cut(s) 501, 771, 1225
AxyI CCTNAGG 1 cut(s) 466
BaeI ACNNNNGTAYC 2 cut(s) 235, 268
BalI TGGCCA 2 cut(s) 357, 608
BanI GGYRCC 2 cut(s) 851, 878
BbsI GAAGAC 1 cut(s) 824
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 4, 235, 1273
BceAI ACGGC 1 cut(s) 832
BciT130I CCWGG 2 cut(s) 986, 1032
BciVI GTATCC 2 cut(s) 263, 1028
BcnI CCSGG 2 cut(s) 160, 1143
BcoDI GTCTC 4 cut(s) 396, 440, 912, 1021
BfaI CTAG 2 cut(s) 249, 1106
BfmI CTRYAG 4 cut(s) 61, 366, 765, 1401
BfrI CTTAAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 1047
BfuI GTATCC 2 cut(s) 263, 1028
BisI GCNGC 6 cut(s) 18, 224, 277, 810, 1287, 1444
BlsI GCNGC 6 cut(s) 19, 225, 278, 811, 1288, 1445
Bme1390I CCNGG 4 cut(s) 160, 986, 1032, 1143
Bme18I GGWCC 3 cut(s) 501, 771, 1225
BmeRI GACNNNNNGTC 1 cut(s) 828
BmgT120I GGNCC 4 cut(s) 384, 501, 771, 1225
BmiI GGNNCC 7 cut(s) 99, 344, 385, 502, 772, 853, 880
BmrFI CCNGG 4 cut(s) 160, 986, 1032, 1143
BmsI GCATC 2 cut(s) 796, 937
BpiI GAAGAC 1 cut(s) 824
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 227
BpuEI CTTGAG 3 cut(s) 224, 953, 1315
BpuMI CCSGG 2 cut(s) 160, 1143
BsaHI GRCGYC 3 cut(s) 163, 720, 1294
BsaI GGTCTC 2 cut(s) 396, 1021
BsaJI CCNNGG 2 cut(s) 609, 1090
BsaWI WCCGGW 1 cut(s) 1262
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 130, 159
Bse1I ACTGG 2 cut(s) 673, 1169
Bse21I CCTNAGG 1 cut(s) 466
Bse3DI GCAATG 2 cut(s) 299, 1140
BseBI CCWGG 2 cut(s) 986, 1032
BseDI CCNNGG 2 cut(s) 609, 1090
BseGI GGATG 4 cut(s) 120, 896, 1198, 1384
BseLI CCNNNNNNNGG 3 cut(s) 33, 130, 159
BseMI GCAATG 2 cut(s) 299, 1140
BseMII CTCAG 4 cut(s) 218, 285, 480, 1179
BseNI ACTGG 2 cut(s) 673, 1169
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 3 cut(s) 4, 235, 1273
BshFI GGCC 7 cut(s) 324, 357, 386, 430, 608, 819, 1141
BshNI GGYRCC 2 cut(s) 851, 878
BsiSI CCGG 3 cut(s) 159, 1142, 1263
BslFI GGGAC 2 cut(s) 784, 1181
BslI CCNNNNNNNGG 3 cut(s) 33, 130, 159
BsmAI GTCTC 4 cut(s) 396, 440, 912, 1021
BsmFI GGGAC 2 cut(s) 784, 1181
BsnI GGCC 7 cut(s) 324, 357, 386, 430, 608, 819, 1141
Bso31I GGTCTC 2 cut(s) 396, 1021
Bsp143I GATC 4 cut(s) 439, 745, 1231, 1246
BspACI CCGC 6 cut(s) 276, 291, 381, 507, 709, 809
BspANI GGCC 7 cut(s) 324, 357, 386, 430, 608, 819, 1141
BspCNI CTCAG 4 cut(s) 219, 286, 479, 1180
BspLI GGNNCC 7 cut(s) 99, 344, 385, 502, 772, 853, 880
BspMAI CTGCAG 2 cut(s) 769, 1405
BspMI ACCTGC 1 cut(s) 1047
BspT107I GGYRCC 2 cut(s) 851, 878
BspTI CTTAAG 1 cut(s) 263
BspTNI GGTCTC 2 cut(s) 396, 1021
BsrDI GCAATG 2 cut(s) 299, 1140
BsrI ACTGG 2 cut(s) 673, 1169
BssECI CCNNGG 2 cut(s) 609, 1090
BssMI GATC 4 cut(s) 439, 745, 1231, 1246
BssNI GRCGYC 3 cut(s) 163, 720, 1294
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 986, 1032
Bst4CI ACNGT 4 cut(s) 113, 367, 484, 1094
Bst6I CTCTTC 5 cut(s) 160, 620, 710, 1019, 1065
BstACI GRCGYC 3 cut(s) 163, 720, 1294
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 806
BstC8I GCNNGC 7 cut(s) 221, 234, 238, 1061, 1065, 1179, 1405
BstDEI CTNAG 5 cut(s) 227, 294, 307, 466, 1188
BstDSI CCRYGG 1 cut(s) 1090
BstF5I GGATG 4 cut(s) 120, 896, 1198, 1384
BstHHI GCGC 1 cut(s) 1059
BstKTI GATC 4 cut(s) 442, 748, 1234, 1249
BstMAI GTCTC 4 cut(s) 396, 440, 912, 1021
BstMBI GATC 4 cut(s) 439, 745, 1231, 1246
BstMWI GCNNNNNNNGC 6 cut(s) 229, 717, 806, 1121, 1130, 1312
BstNI CCWGG 2 cut(s) 986, 1032
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 4 cut(s) 158, 984, 1030, 1141
BstSFI CTRYAG 4 cut(s) 61, 366, 765, 1401
BstV1I GCAGC 3 cut(s) 4, 235, 1273
BstV2I GAAGAC 1 cut(s) 824
BstXI CCANNNNNNTGG 1 cut(s) 353
Bsu36I CCTNAGG 1 cut(s) 466
BsuI GTATCC 2 cut(s) 263, 1028
BsuRI GGCC 7 cut(s) 324, 357, 386, 430, 608, 819, 1141
BtgI CCRYGG 1 cut(s) 1090
BtgZI GCGATG 1 cut(s) 861
BtsCI GGATG 4 cut(s) 120, 896, 1198, 1384
BtsI GCAGTG 2 cut(s) 387, 718
BtsIMutI CAGTG 3 cut(s) 387, 718, 1260
BveI ACCTGC 1 cut(s) 1047
Cac8I GCNNGC 7 cut(s) 221, 234, 238, 1061, 1065, 1179, 1405
CaiI CAGNNNCTG 1 cut(s) 950
CfoI GCGC 1 cut(s) 1059
Cfr13I GGNCC 4 cut(s) 384, 501, 771, 1225
CseI GACGC 2 cut(s) 152, 709
Csp6I GTAC 1 cut(s) 1427
CviAII CATG 6 cut(s) 233, 339, 601, 901, 991, 1021
CviQI GTAC 1 cut(s) 1427
DdeI CTNAG 5 cut(s) 227, 294, 307, 466, 1188
DpnI GATC 4 cut(s) 441, 747, 1233, 1248
DpnII GATC 4 cut(s) 439, 745, 1231, 1246
DriI GACNNNNNGTC 1 cut(s) 828
EaeI YGGCCR 2 cut(s) 355, 606
Eam1104I CTCTTC 5 cut(s) 160, 620, 710, 1019, 1065
Eam1105I GACNNNNNGTC 1 cut(s) 828
EarI CTCTTC 5 cut(s) 160, 620, 710, 1019, 1065
Eco130I CCWWGG 1 cut(s) 609
Eco31I GGTCTC 2 cut(s) 396, 1021
Eco32I GATATC 1 cut(s) 1434
Eco47I GGWCC 3 cut(s) 501, 771, 1225
Eco57I CTGAAG 5 cut(s) 76, 393, 891, 1089, 1149
Eco81I CCTNAGG 1 cut(s) 466
EcoO109I RGGNCCY 1 cut(s) 1225
EcoRII CCWGG 2 cut(s) 984, 1030
EcoRV GATATC 1 cut(s) 1434
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 6 cut(s) 236, 342, 604, 904, 994, 1024
FalI AAGNNNNNCTT 2 cut(s) 1299, 1331
FaqI GGGAC 2 cut(s) 784, 1181
FatI CATG 6 cut(s) 232, 338, 600, 900, 990, 1020
FauI CCCGC 2 cut(s) 374, 500
FauNDI CATATG 1 cut(s) 884
Fnu4HI GCNGC 6 cut(s) 18, 224, 277, 810, 1287, 1444
FokI GGATG 4 cut(s) 107, 883, 1205, 1391
Fsp4HI GCNGC 6 cut(s) 18, 224, 277, 810, 1287, 1444
FspBI CTAG 2 cut(s) 249, 1106
GlaI GCGC 1 cut(s) 1058
GluI GCNGC 6 cut(s) 18, 224, 277, 810, 1287, 1444
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 7 cut(s) 324, 357, 386, 430, 608, 819, 1141
HapII CCGG 3 cut(s) 159, 1142, 1263
HgaI GACGC 2 cut(s) 152, 709
HhaI GCGC 1 cut(s) 1059
Hin1I GRCGYC 3 cut(s) 163, 720, 1294
Hin1II CATG 6 cut(s) 236, 342, 604, 904, 994, 1024
Hin6I GCGC 1 cut(s) 1057
HinP1I GCGC 1 cut(s) 1057
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 6 cut(s) 206, 296, 635, 790, 963, 973
HpaII CCGG 3 cut(s) 159, 1142, 1263
HphI GGTGA 2 cut(s) 16, 101
Hpy166II GTNNAC 3 cut(s) 178, 666, 1090
Hpy188III TCNNGA 6 cut(s) 443, 456, 970, 1097, 1106, 1332
Hpy8I GTNNAC 3 cut(s) 178, 666, 1090
Hpy99I CGWCG 1 cut(s) 1296
HpyAV CCTTC 4 cut(s) 93, 326, 417, 710
HpyCH4III ACNGT 4 cut(s) 113, 367, 484, 1094
HpyCH4IV ACGT 2 cut(s) 1294, 1371
HpyCH4V TGCA 6 cut(s) 148, 304, 682, 767, 1177, 1403
HpyF10VI GCNNNNNNNGC 6 cut(s) 229, 717, 806, 1121, 1130, 1312
HpyF3I CTNAG 5 cut(s) 227, 294, 307, 466, 1188
HpySE526I ACGT 2 cut(s) 1294, 1371
Hsp92I GRCGYC 3 cut(s) 163, 720, 1294
Hsp92II CATG 6 cut(s) 236, 342, 604, 904, 994, 1024
HspAI GCGC 1 cut(s) 1057
Kzo9I GATC 4 cut(s) 439, 745, 1231, 1246
LmnI GCTCC 3 cut(s) 245, 597, 1145
Lsp1109I GCAGC 3 cut(s) 4, 235, 1273
LweI GCATC 2 cut(s) 796, 937
MaeI CTAG 2 cut(s) 249, 1106
MaeII ACGT 2 cut(s) 1294, 1371
MaeIII GTNAC 5 cut(s) 22, 113, 453, 1016, 1075
MalI GATC 4 cut(s) 441, 747, 1233, 1248
MboI GATC 4 cut(s) 439, 745, 1231, 1246
MlsI TGGCCA 2 cut(s) 357, 608
MluCI AATT 4 cut(s) 492, 526, 1157, 1356
MluNI TGGCCA 2 cut(s) 357, 608
MlyI GAGTC 2 cut(s) 215, 305
MmeI TCCRAC 3 cut(s) 267, 379, 612
Mox20I TGGCCA 2 cut(s) 357, 608
MscI TGGCCA 2 cut(s) 357, 608
MseI TTAA 3 cut(s) 264, 621, 839
Msp20I TGGCCA 2 cut(s) 357, 608
MspA1I CMGCKG 5 cut(s) 226, 293, 507, 1286, 1446
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 3 cut(s) 159, 1142, 1263
MspR9I CCNGG 4 cut(s) 160, 986, 1032, 1143
MvaI CCWGG 2 cut(s) 986, 1032
MwoI GCNNNNNNNGC 6 cut(s) 229, 717, 806, 1121, 1130, 1312
NciI CCSGG 2 cut(s) 160, 1143
NdeI CATATG 1 cut(s) 884
NdeII GATC 4 cut(s) 439, 745, 1231, 1246
NlaIII CATG 6 cut(s) 236, 342, 604, 904, 994, 1024
NlaIV GGNNCC 7 cut(s) 99, 344, 385, 502, 772, 853, 880
NmuCI GTSAC 3 cut(s) 22, 453, 1016
NspI RCATGY 1 cut(s) 236
PaeI GCATGC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 635, 790, 963, 973
PflFI GACNNNGTC 1 cut(s) 451
PfoI TCCNGGA 1 cut(s) 984
PkrI GCNGC 6 cut(s) 19, 225, 278, 811, 1288, 1445
PleI GAGTC 2 cut(s) 214, 304
PpsI GAGTC 2 cut(s) 214, 304
PpuMI RGGWCCY 1 cut(s) 1225
Psp5II RGGWCCY 1 cut(s) 1225
Psp6I CCWGG 2 cut(s) 984, 1030
PspGI CCWGG 2 cut(s) 984, 1030
PspN4I GGNNCC 7 cut(s) 99, 344, 385, 502, 772, 853, 880
PspPI GGNCC 4 cut(s) 384, 501, 771, 1225
PspPPI RGGWCCY 1 cut(s) 1225
PstI CTGCAG 2 cut(s) 769, 1405
PstNI CAGNNNCTG 1 cut(s) 950
PsyI GACNNNGTC 1 cut(s) 451
PvuII CAGCTG 3 cut(s) 226, 1286, 1446
RsaI GTAC 1 cut(s) 1428
RsaNI GTAC 1 cut(s) 1427
SaqAI TTAA 3 cut(s) 264, 621, 839
SatI GCNGC 6 cut(s) 18, 224, 277, 810, 1287, 1444
Sau3AI GATC 4 cut(s) 439, 745, 1231, 1246
Sau96I GGNCC 4 cut(s) 384, 501, 771, 1225
SchI GAGTC 2 cut(s) 215, 305
ScrFI CCNGG 4 cut(s) 160, 986, 1032, 1143
SfaNI GCATC 2 cut(s) 796, 937
SfcI CTRYAG 4 cut(s) 61, 366, 765, 1401
SinI GGWCC 3 cut(s) 501, 771, 1225
SmlI CTYRAG 4 cut(s) 203, 263, 968, 1330
SmoI CTYRAG 4 cut(s) 203, 263, 968, 1330
SphI GCATGC 1 cut(s) 236
Sse9I AATT 4 cut(s) 492, 526, 1157, 1356
SsiI CCGC 6 cut(s) 276, 291, 381, 507, 709, 809
SspMI CTAG 2 cut(s) 249, 1106
StyD4I CCNGG 4 cut(s) 158, 984, 1030, 1141
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 113, 367, 484, 1094
TaiI ACGT 2 cut(s) 1297, 1374
TaqII GACCGA 1 cut(s) 788
TasI AATT 4 cut(s) 492, 526, 1157, 1356
TauI GCSGC 2 cut(s) 279, 812
TfiI GAWTC 4 cut(s) 635, 790, 963, 973
Tru1I TTAA 3 cut(s) 264, 621, 839
Tru9I TTAA 3 cut(s) 264, 621, 839
TscAI CASTG 3 cut(s) 394, 718, 1260
TseFI GTSAC 3 cut(s) 22, 453, 1016
TseI GCWGC 4 cut(s) 17, 223, 1286, 1443
Tsp45I GTSAC 3 cut(s) 22, 453, 1016
TspDTI ATGAA 4 cut(s) 17, 1007, 1037, 1125
TspGWI ACGGA 4 cut(s) 799, 818, 928, 1444
TspRI CASTG 3 cut(s) 394, 718, 1260
Tth111I GACNNNGTC 1 cut(s) 451
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 3 cut(s) 501, 771, 1225
XapI RAATTY 1 cut(s) 492
XbaI TCTAGA 1 cut(s) 1105
XceI RCATGY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XspI CTAG 2 cut(s) 249, 1106
ZraI GACGTC 1 cut(s) 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.