Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006618

Physical Location & Seq

Genomic Coordinates Forward (+)

17637599 .. 17638669

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0201700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCAATCAGTATCCAATTGCTAGGAAATAATCTTAATGGCAGCATCCCTTCGAGCCTGGGAAAATGCCATAGGTTGCTAGAATTGGATCTTGCTCAAAATAACCTTGACGGCACAATACCTCAACAACTACTCATTGGCCTTCCCTTATCAATTTATTTGTACTTTTCGGAAAATCGCTTTAGTGGGTCCCTGCCTGTGGAGGTTGGAACGTTGAAGGCTCGAAGTGTACTAGACATTCTCGATAACATGTTATCTGGAGAATTTCCCAATAGCCTTGGTGGTTGTGAGAATTTAGAAGCCCTACACTTGCAAGGCAACTTCTTCAAGGGTCCAATTCCTTCATCTATGACTATGAGTGCATTGAGAGGGATTCAAGAGTTAGACCTTTCTCGCAACAATTTGTCTGGTGAAATTCCACAGTTTTTAGAGAGCTTTGTCTTCTTGAAGAATCTGAACTTATCTTTCAATCAGTTTTGGGGAGAAGTACATATTAAAGGTGTTTTTGAGAATGCAACTTCAGTTGTTGGAAATGTGAGGCTGTGTGGTGGTATTGCTATTCTTCGGCTTCCAACATGCAAGTCTAAAGGAGGAGGATTATCTCATAGAATGAAAGTAATGATCTCTTTAGTATCTGTGTGCTGCTATAGGAATAGCTATGCTACTGATGAGTTCTGTTCAACTAATTTGATTGGTATGGGTGGTTTTGAGTCTGTGTATAAAGGAGTTCTAGATGATGGTAGAGTTGTTGCTGTGAAGGTGTTTAACATGTTACACCGGGGAGCTTCAAAGAGCTTCATAGCTGAATGTGAGGCACTGAGAAATATCAAGCATCGAAATCTAGTCAAAATTATAAGTGCATGTTCATCTATTGATTTCCATGGAAATGATTTTAAGGCTCTAGTTTATGAGGCACAAAGGATAAGCAGAAAAATGTGGAGTGCTTGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016874 GO:0016875 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034660 GO:0043038 GO:0043039 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

S4 tRNA-synt_1b

Protein Analysis

317

Amino Acids

34.85

Weight (kDa)

8.54

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	229 - 290	1.3e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	229 - 289	1.2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006618)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02660 AT3G02660
fragaria_vesca	FvH4_5g28930 FvH4_5g28930 FvH4_6g39550
malus_domestica	MD08G1236200.v1.1 MD15G1428200.v1.1
prunus_persica	Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1 Prupe.1G572900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0221241
rosa_laevigata	RLG00000002167
rosa_multiflora	Rmu_sc0000324.1_g000017 Rmu_sc0032411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00238530
rosa_rugosa	Rorug07G0201700
rosa_samantha	Rh7AG340600 Rh7BG331800 Rh7CG358500 Rh7DG339400
rosa_wichuraiana	Rw7G028990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AclI	AACGTT	1 cut(s)	212
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	3 cut(s)	263, 292, 414
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	3 cut(s)	164, 231, 489
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	2 cut(s)	249, 768
AgsI	TTSAA	7 cut(s)	217, 328, 377, 448, 469, 681, 789
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	435, 657, 785, 795, 803
AluI	AGCT	5 cut(s)	435, 657, 785, 795, 803
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	42, 642
ApoI	RAATTY	3 cut(s)	263, 292, 414
AspS9I	GGNCC	2 cut(s)	189, 332
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	189, 332
BbsI	GAAGAC	1 cut(s)	433
BbvI	GCAGC	2 cut(s)	54, 629
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	779
BfaI	CTAG	6 cut(s)	23, 80, 233, 731, 842, 902
BfmI	CTRYAG	1 cut(s)	646
BfuI	GTATCC	1 cut(s)	23
BisI	GCNGC	2 cut(s)	43, 643
BlsI	GCNGC	2 cut(s)	44, 644
Bme1390I	CCNGG	2 cut(s)	59, 779
Bme18I	GGWCC	2 cut(s)	189, 332
BmgT120I	GGNCC	2 cut(s)	189, 332
BmiI	GGNNCC	3 cut(s)	190, 191, 333
BmrFI	CCNGG	2 cut(s)	59, 779
BmsI	GCATC	2 cut(s)	54, 841
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	779
BsaJI	CCNNGG	4 cut(s)	58, 277, 778, 880
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	4 cut(s)	58, 277, 778, 880
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	809
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	2 cut(s)	54, 629
BshFI	GGCC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	778
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	88, 621
Bsp19I	CCATGG	1 cut(s)	880
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	810
BspLI	GGNNCC	3 cut(s)	190, 191, 333
BspPI	GGATC	1 cut(s)	96
BssECI	CCNNGG	4 cut(s)	58, 277, 778, 880
BssMI	GATC	2 cut(s)	88, 621
BssT1I	CCWWGG	2 cut(s)	277, 880
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	818
BstDSI	CCRYGG	1 cut(s)	880
BstF5I	GGATG	1 cut(s)	45
BstKTI	GATC	2 cut(s)	91, 624
BstMBI	GATC	2 cut(s)	88, 621
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	4 cut(s)	253, 579, 772, 864
BstSCI	CCNGG	2 cut(s)	57, 777
BstSFI	CTRYAG	1 cut(s)	646
BstV1I	GCAGC	2 cut(s)	54, 629
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	880
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	815
Cfr13I	GGNCC	2 cut(s)	189, 332
Csp6I	GTAC	3 cut(s)	163, 230, 488
CviAII	CATG	5 cut(s)	250, 576, 769, 861, 881
CviQI	GTAC	3 cut(s)	163, 230, 488
DdeI	CTNAG	1 cut(s)	818
DpnI	GATC	2 cut(s)	90, 623
DpnII	GATC	2 cut(s)	88, 621
Eco130I	CCWWGG	2 cut(s)	277, 880
Eco47I	GGWCC	2 cut(s)	189, 332
Eco57I	CTGAAG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	277, 880
ErhI	CCWWGG	2 cut(s)	277, 880
FaeI	CATG	5 cut(s)	253, 579, 772, 864, 884
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	5 cut(s)	249, 575, 768, 860, 880
Fnu4HI	GCNGC	2 cut(s)	43, 643
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	43, 643
FspBI	CTAG	6 cut(s)	23, 80, 233, 731, 842, 902
GluI	GCNGC	2 cut(s)	43, 643
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	778
Hin1II	CATG	5 cut(s)	253, 579, 772, 864, 884
HinfI	GANTC	3 cut(s)	373, 451, 710
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	172, 456
Hpy188III	TCNNGA	6 cut(s)	242, 258, 377, 445, 731, 951
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	5 cut(s)	60, 152, 211, 351, 751
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	5 cut(s)	313, 362, 515, 579, 860
HpyF3I	CTNAG	1 cut(s)	818
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	5 cut(s)	253, 579, 772, 864, 884
KflI	GGGWCCC	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	88, 621
LmnI	GCTCC	1 cut(s)	782
LpnPI	CCDG	7 cut(s)	44, 71, 206, 210, 243, 393, 791
Lsp1109I	GCAGC	2 cut(s)	54, 629
LweI	GCATC	2 cut(s)	54, 841
MaeI	CTAG	6 cut(s)	23, 80, 233, 731, 842, 902
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	771
MalI	GATC	2 cut(s)	90, 623
MboI	GATC	2 cut(s)	88, 621
MboII	GAAGA	4 cut(s)	316, 433, 460, 554
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	719
MmeI	TCCRAC	3 cut(s)	187, 508, 596
MnlI	CCTC	8 cut(s)	132, 196, 362, 531, 584, 587, 805, 904
MseI	TTAA	4 cut(s)	36, 495, 765, 894
MslI	CAYNNNNRTG	1 cut(s)	885
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	2 cut(s)	59, 779
MunI	CAATTG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	59
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	880
NdeII	GATC	2 cut(s)	88, 621
NlaIII	CATG	5 cut(s)	253, 579, 772, 864, 884
NlaIV	GGNNCC	3 cut(s)	190, 191, 333
NspI	RCATGY	4 cut(s)	253, 579, 772, 864
PciI	ACATGT	2 cut(s)	249, 768
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	373, 451
PkrI	GCNGC	2 cut(s)	44, 644
PleI	GAGTC	1 cut(s)	718
PpsI	GAGTC	1 cut(s)	718
PpuMI	RGGWCCY	1 cut(s)	189
PscI	ACATGT	2 cut(s)	249, 768
PsiI	TTATAA	1 cut(s)	854
Psp1406I	AACGTT	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	190, 191, 333
PspPI	GGNCC	2 cut(s)	189, 332
PspPPI	RGGWCCY	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	3 cut(s)	164, 231, 489
RsaNI	GTAC	3 cut(s)	163, 230, 488
RseI	CAYNNNNRTG	1 cut(s)	885
SaqAI	TTAA	4 cut(s)	36, 495, 765, 894
SatI	GCNGC	2 cut(s)	43, 643
Sau3AI	GATC	2 cut(s)	88, 621
Sau96I	GGNCC	2 cut(s)	189, 332
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	2 cut(s)	59, 779
SfaNI	GCATC	2 cut(s)	54, 841
SfcI	CTRYAG	1 cut(s)	646
SinI	GGWCC	2 cut(s)	189, 332
SmiMI	CAYNNNNRTG	1 cut(s)	885
SspMI	CTAG	6 cut(s)	23, 80, 233, 731, 842, 902
StyD4I	CCNGG	2 cut(s)	57, 777
StyI	CCWWGG	2 cut(s)	277, 880
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	53, 223, 243, 835
TatI	WGTACW	3 cut(s)	162, 229, 487
TfiI	GAWTC	2 cut(s)	373, 451
Tru1I	TTAA	4 cut(s)	36, 495, 765, 894
Tru9I	TTAA	4 cut(s)	36, 495, 765, 894
TscAI	CASTG	1 cut(s)	822
TseI	GCWGC	2 cut(s)	42, 642
TspDTI	ATGAA	4 cut(s)	333, 626, 787, 855
TspRI	CASTG	1 cut(s)	822
VpaK11BI	GGWCC	2 cut(s)	189, 332
XapI	RAATTY	3 cut(s)	263, 292, 414
XbaI	TCTAGA	1 cut(s)	730
XceI	RCATGY	4 cut(s)	253, 579, 772, 864
XspI	CTAG	6 cut(s)	23, 80, 233, 731, 842, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.