MD08G1236200.v1.1

tyrosine--tRNA

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
30406765 .. 30411513
4749 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1236200.v1.1.491

Sequence Viewer

Length: 1494 bp
ATGGCTGAGTGCCGAAGAATCATTTTTTGGAGAGAGAATTTAATAATGGCTGCTGCCACCACCTCAAGGGCCTTTCTCTACTCCCATTACTACCGTAGTCTCCCATTCTTCTTTCCCCCTCTTAGTACTGTGTCTAGGTTACCCACCGTTCGCAGAAATAAGTTGAGGAATCCAGTCATTCTCTCTACCATCAAGTGTTTTCAGTCCTTGTCCGGGCGTCCAAATGTGGTTGAAATTCTTGAAGAGAGAGGGTTGCTTGAATCCATCACCAGTGAGCATTTAAGGCAATCCTGTTCTGACCCCAATCTCCCTCCTCTCAAAGTCTATTGTGGGTTTGACCCAACTGCCGAATCCTTGCACTTGGGAAACCTTATTGGAATTGTTGTCCTCTCATGGTTCCAAAGATGTGGGCATCACCCCGTTGCTTTGATCGGTGGTGCCACCGCTCGTGTTGGAGACCCTTCCGGCAAGAGCTTGGAGAGACCCGAGCTCGACCTTGATACTCTGTCCCGAAACACCACAGGAGTAACCAATACGATTACGAGAATTCTGGGTGGGATTTCCATCTTGAATAATTATGATTGGTGGAAAGAGGTTCGGTTGTTAGAGTTTCTCAAAGATGTGGGTCGGTATGCAAGAGTGGGGAGCATGATAGCAAAGGAGAGTGTGAAGAAGAGGTTGGAGTCAGAACAAGGAATGAGCTATACTGAGTTCACTTACCAGTTATTGCAGGGATATGATTTCCTCCACCTCTTCCGCAATGAAGGTGTTAATGTCCAGATTGGAGGTAGCGATCAATGGGGGAATATAACTGCAGGGACTGAACTCATACGCAAGATTCTTCGTGTGGATGCTGCTGCTTATGGCTTGACATTTCCTCTTCTACTGAAGAGTGATGGAACCAAATTTGGCAAGTCCGAAGATGGTGCCATATGGCTTTCGCCATCCATGTTGTCTCCCTATAAGTTGTATCAGTATTTGTTCTCTGTTCCCGATGTTGATGTGGTCAGGTTTCTCAAGATTCTCACTTTCCTGGACATGGATGACATCAAACAGTTAGAGAGCGAGATGGAGAGACCTGGATACTTGCCCAACACAGCTCAGCGCAGGCTTGCTGAGGAGGTCACTCGTTTTGTGCATGGTCAAGATGGTCTGGACGAGGCCCTCAAGGCAACTGAAGCAATGAGGCCTGGTGCTGATACTAAATTGGACTGGAACACCATTAAAGCCATTTCTGAGGATGTCCCCTCATGCTCATTCCTGTATCATCAGGTCCTTGATCTCTCTATTCTTGATCTCTCAGTTTCATCTGGTTTGCTTGACAGCAAATCTGCTGCCCGGCGTCTGTTGAAGCAAGGGGGACTTTACTTGAACAACTCCAAAGTTGATAGTGAAAATAAGAGAATTGAACCTGAAGACATTGTGGACGGGAAACTTCTGCTTTTATCTGCAGGCAAGAAGAATAAGGTTCTGGTACAGATAAGCGACACCTGA

Protein Analysis

498

Amino Acids

55.8

Weight (kDa)

7.61

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 105 - 394 5.2e-74 tRNA synthetases class I (W and Y)
SYY_C-terminal PF22421 408 - 492 4.1e-10 Tyrosine--tRNA ligase SYY-like C-terminal domain
S4 PF01479 435 - 475 2.5e-06 S4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 437, 926
AccBSI CCGCTC 1 cut(s) 446
AciI CCGC 2 cut(s) 444, 757
AcsI RAATTY 4 cut(s) 37, 234, 546, 905
AcuI CTGAAG 3 cut(s) 908, 1197, 1434
AcyI GRCGYC 2 cut(s) 217, 1342
AfaI GTAC 2 cut(s) 127, 1476
AfiI CCNNNNNNNGG 3 cut(s) 66, 213, 1039
AgsI TTSAA 7 cut(s) 233, 242, 260, 571, 1351, 1372, 1409
AjnI CCWGG 3 cut(s) 1032, 1078, 1189
AjuI GAANNNNNNNTTGG 4 cut(s) 10, 42, 662, 694
AluBI AGCT 4 cut(s) 474, 490, 702, 1100
AluI AGCT 4 cut(s) 474, 490, 702, 1100
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 5 cut(s) 104, 450, 475, 960, 1069
AlwNI CAGNNNCTG 1 cut(s) 821
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 3 cut(s) 69, 1161, 1187
ApeKI GCWGC 5 cut(s) 50, 53, 854, 857, 1334
ApoI RAATTY 4 cut(s) 37, 234, 546, 905
AspLEI GCGC 1 cut(s) 1107
AspS9I GGNCC 3 cut(s) 69, 1162, 1273
AsuC2I CCSGG 2 cut(s) 214, 1339
AsuHPI GGTGA 2 cut(s) 259, 407
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 1273
BanI GGYRCC 2 cut(s) 437, 926
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 1422
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 5 cut(s) 37, 40, 841, 844, 1321
BccI CCATC 8 cut(s) 197, 272, 572, 890, 917, 952, 1063, 1142
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciT130I CCWGG 3 cut(s) 1034, 1080, 1191
BciVI GTATCC 1 cut(s) 1076
BcnI CCSGG 2 cut(s) 214, 1339
BcoDI GTCTC 5 cut(s) 104, 450, 475, 960, 1069
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 2 cut(s) 813, 1449
BfuI GTATCC 1 cut(s) 1076
BglI GCCNNNNNGGC 1 cut(s) 1169
BisI GCNGC 5 cut(s) 51, 54, 855, 858, 1335
BlpI GCTNAGC 1 cut(s) 1101
BlsI GCNGC 5 cut(s) 52, 55, 856, 859, 1336
BmcAI AGTACT 1 cut(s) 127
Bme1390I CCNGG 5 cut(s) 214, 1034, 1080, 1191, 1339
Bme18I GGWCC 1 cut(s) 1273
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 69, 1162, 1273
BmiI GGNNCC 4 cut(s) 398, 439, 901, 928
BmrFI CCNGG 5 cut(s) 214, 1034, 1080, 1191, 1339
BmsI GCATC 2 cut(s) 421, 841
BpiI GAAGAC 1 cut(s) 1422
Bpu10I CCTNAGC 1 cut(s) 1116
Bpu1102I GCTNAGC 1 cut(s) 1101
BpuEI CTTGAG 3 cut(s) 49, 1001, 1151
BpuMI CCSGG 2 cut(s) 214, 1339
BsaBI GATNNNNATC 1 cut(s) 563
BsaHI GRCGYC 2 cut(s) 217, 1342
BsaI GGTCTC 3 cut(s) 450, 475, 1069
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 213, 1039
Bse1I ACTGG 4 cut(s) 173, 270, 721, 1217
Bse3DI GCAATG 2 cut(s) 766, 1188
Bse8I GATNNNNATC 1 cut(s) 563
BseBI CCWGG 3 cut(s) 1034, 1080, 1191
BseGI GGATG 4 cut(s) 856, 944, 1048, 1246
BseJI GATNNNNATC 1 cut(s) 563
BseLI CCNNNNNNNGG 3 cut(s) 66, 213, 1039
BseMI GCAATG 2 cut(s) 766, 1188
BseMII CTCAG 5 cut(s) 699, 1107, 1115, 1227, 1314
BseNI ACTGG 4 cut(s) 173, 270, 721, 1217
BseRI GAGGAG 2 cut(s) 303, 1133
BseXI GCAGC 5 cut(s) 37, 40, 841, 844, 1321
BshFI GGCC 3 cut(s) 71, 1163, 1189
BshNI GGYRCC 2 cut(s) 437, 926
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 3 cut(s) 213, 465, 1339
BslFI GGGAC 4 cut(s) 493, 832, 1229, 1374
BslI CCNNNNNNNGG 3 cut(s) 66, 213, 1039
BsmAI GTCTC 5 cut(s) 104, 450, 475, 960, 1069
BsmFI GGGAC 4 cut(s) 493, 832, 1229, 1374
BsnI GGCC 3 cut(s) 71, 1163, 1189
Bso31I GGTCTC 3 cut(s) 450, 475, 1069
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 4 cut(s) 429, 793, 1279, 1294
Bsp1720I GCTNAGC 1 cut(s) 1101
BspACI CCGC 2 cut(s) 444, 757
BspANI GGCC 3 cut(s) 71, 1163, 1189
BspCNI CTCAG 5 cut(s) 700, 1108, 1114, 1228, 1313
BspLI GGNNCC 4 cut(s) 398, 439, 901, 928
BspMAI CTGCAG 2 cut(s) 817, 1453
BspT107I GGYRCC 2 cut(s) 437, 926
BspTNI GGTCTC 3 cut(s) 450, 475, 1069
BsrBI CCGCTC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 766, 1188
BsrI ACTGG 4 cut(s) 173, 270, 721, 1217
BssMI GATC 4 cut(s) 429, 793, 1279, 1294
BssNI GRCGYC 2 cut(s) 217, 1342
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 3 cut(s) 1034, 1080, 1191
Bst4CI ACNGT 4 cut(s) 95, 130, 148, 1056
Bst6I CTCTTC 5 cut(s) 237, 668, 758, 884, 885
BstACI GRCGYC 2 cut(s) 217, 1342
BstC8I GCNNGC 3 cut(s) 1109, 1113, 1453
BstDEI CTNAG 7 cut(s) 6, 122, 708, 1101, 1116, 1236, 1300
BstEII GGTNACC 1 cut(s) 138
BstF5I GGATG 4 cut(s) 856, 944, 1048, 1246
BstHHI GCGC 1 cut(s) 1107
BstKTI GATC 4 cut(s) 432, 796, 1282, 1297
BstMAI GTCTC 5 cut(s) 104, 450, 475, 960, 1069
BstMBI GATC 4 cut(s) 429, 793, 1279, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 283, 1169, 1178
BstNI CCWGG 3 cut(s) 1034, 1080, 1191
BstPI GGTNACC 1 cut(s) 138
BstSCI CCNGG 5 cut(s) 212, 1032, 1078, 1189, 1337
BstSFI CTRYAG 2 cut(s) 813, 1449
BstV1I GCAGC 5 cut(s) 37, 40, 841, 844, 1321
BstV2I GAAGAC 1 cut(s) 1422
BstXI CCANNNNNNTGG 1 cut(s) 407
BsuI GTATCC 1 cut(s) 1076
BsuRI GGCC 3 cut(s) 71, 1163, 1189
BtsCI GGATG 4 cut(s) 856, 944, 1048, 1246
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 3 cut(s) 1109, 1113, 1453
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 1 cut(s) 1107
Cfr13I GGNCC 3 cut(s) 69, 1162, 1273
CseI GACGC 2 cut(s) 206, 1331
Csp6I GTAC 2 cut(s) 126, 1475
CviAII CATG 6 cut(s) 393, 649, 949, 1039, 1139, 1251
CviQI GTAC 2 cut(s) 126, 1475
DdeI CTNAG 7 cut(s) 6, 122, 708, 1101, 1116, 1236, 1300
DpnI GATC 4 cut(s) 431, 795, 1281, 1296
DpnII GATC 4 cut(s) 429, 793, 1279, 1294
Eam1104I CTCTTC 5 cut(s) 237, 668, 758, 884, 885
EarI CTCTTC 5 cut(s) 237, 668, 758, 884, 885
Ecl136II GAGCTC 1 cut(s) 490
Eco147I AGGCCT 1 cut(s) 1189
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 3 cut(s) 450, 475, 1069
Eco47I GGWCC 1 cut(s) 1273
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 3 cut(s) 908, 1197, 1434
Eco88I CYCGRG 1 cut(s) 485
Eco91I GGTNACC 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 3 cut(s) 69, 1162, 1273
EcoO65I GGTNACC 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 546
EcoRII CCWGG 3 cut(s) 1032, 1078, 1189
EcoT38I GRGCYC 1 cut(s) 492
FaeI CATG 6 cut(s) 396, 652, 952, 1042, 1142, 1254
FalI AAGNNNNNCTT 2 cut(s) 1347, 1379
FaqI GGGAC 4 cut(s) 493, 832, 1229, 1374
FatI CATG 6 cut(s) 392, 648, 948, 1038, 1138, 1250
FauNDI CATATG 1 cut(s) 932
Fnu4HI GCNGC 5 cut(s) 51, 54, 855, 858, 1335
FokI GGATG 4 cut(s) 863, 931, 1055, 1253
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 5 cut(s) 51, 54, 855, 858, 1335
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 1106
GluI GCNGC 5 cut(s) 51, 54, 855, 858, 1335
HaeIII GGCC 3 cut(s) 71, 1163, 1189
HapII CCGG 3 cut(s) 213, 465, 1339
HgaI GACGC 2 cut(s) 206, 1331
HhaI GCGC 1 cut(s) 1107
Hin1I GRCGYC 2 cut(s) 217, 1342
Hin1II CATG 6 cut(s) 396, 652, 952, 1042, 1142, 1254
Hin6I GCGC 1 cut(s) 1105
HinP1I GCGC 1 cut(s) 1105
HinfI GANTC 7 cut(s) 18, 169, 260, 350, 683, 838, 1021
HpaII CCGG 3 cut(s) 213, 465, 1339
HphI GGTGA 2 cut(s) 259, 407
Hpy166II GTNNAC 2 cut(s) 714, 1426
Hpy188I TCNGA 4 cut(s) 298, 688, 919, 1237
Hpy188III TCNNGA 9 cut(s) 239, 510, 568, 778, 992, 1018, 1145, 1154, 1292
Hpy8I GTNNAC 2 cut(s) 714, 1426
HpyAV CCTTC 2 cut(s) 471, 758
HpyCH4III ACNGT 4 cut(s) 95, 130, 148, 1056
HpyCH4V TGCA 6 cut(s) 358, 635, 730, 815, 1138, 1451
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 1169, 1178
HpyF3I CTNAG 7 cut(s) 6, 122, 708, 1101, 1116, 1236, 1300
Hsp92I GRCGYC 2 cut(s) 217, 1342
Hsp92II CATG 6 cut(s) 396, 652, 952, 1042, 1142, 1254
HspAI GCGC 1 cut(s) 1105
Kzo9I GATC 4 cut(s) 429, 793, 1279, 1294
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 5 cut(s) 37, 40, 841, 844, 1321
LweI GCATC 2 cut(s) 421, 841
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 3 cut(s) 138, 526, 1123
MalI GATC 4 cut(s) 431, 795, 1281, 1296
MbiI CCGCTC 1 cut(s) 446
MboI GATC 4 cut(s) 429, 793, 1279, 1294
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 8 cut(s) 37, 234, 378, 546, 574, 905, 1205, 1404
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 2 cut(s) 433, 660
MseI TTAA 4 cut(s) 41, 281, 771, 1224
MspI CCGG 3 cut(s) 213, 465, 1339
MspR9I CCNGG 5 cut(s) 214, 1034, 1080, 1191, 1339
MvaI CCWGG 3 cut(s) 1034, 1080, 1191
MwoI GCNNNNNNNGC 3 cut(s) 283, 1169, 1178
NciI CCSGG 2 cut(s) 214, 1339
NdeI CATATG 1 cut(s) 932
NdeII GATC 4 cut(s) 429, 793, 1279, 1294
NlaIII CATG 6 cut(s) 396, 652, 952, 1042, 1142, 1254
NlaIV GGNNCC 4 cut(s) 398, 439, 901, 928
NmuCI GTSAC 1 cut(s) 1123
PceI AGGCCT 1 cut(s) 1189
PfeI GAWTC 6 cut(s) 18, 169, 260, 350, 838, 1021
PfoI TCCNGGA 1 cut(s) 1032
PkrI GCNGC 5 cut(s) 52, 55, 856, 859, 1336
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
PpuMI RGGWCCY 1 cut(s) 1273
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 1273
Psp6I CCWGG 3 cut(s) 1032, 1078, 1189
PspEI GGTNACC 1 cut(s) 138
PspGI CCWGG 3 cut(s) 1032, 1078, 1189
PspN4I GGNNCC 4 cut(s) 398, 439, 901, 928
PspPI GGNCC 3 cut(s) 69, 1162, 1273
PspPPI RGGWCCY 1 cut(s) 1273
PstI CTGCAG 2 cut(s) 817, 1453
PstNI CAGNNNCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 127, 1476
RsaNI GTAC 2 cut(s) 126, 1475
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 4 cut(s) 41, 281, 771, 1224
SatI GCNGC 5 cut(s) 51, 54, 855, 858, 1335
Sau3AI GATC 4 cut(s) 429, 793, 1279, 1294
Sau96I GGNCC 3 cut(s) 69, 1162, 1273
ScaI AGTACT 1 cut(s) 127
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 5 cut(s) 214, 1034, 1080, 1191, 1339
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 2 cut(s) 421, 841
SfcI CTRYAG 2 cut(s) 813, 1449
SinI GGWCC 1 cut(s) 1273
SmlI CTYRAG 3 cut(s) 64, 1016, 1166
SmoI CTYRAG 3 cut(s) 64, 1016, 1166
Sse9I AATT 8 cut(s) 37, 234, 378, 546, 574, 905, 1205, 1404
SseBI AGGCCT 1 cut(s) 1189
SsiI CCGC 2 cut(s) 444, 757
SspMI CTAG 1 cut(s) 135
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 1 cut(s) 1189
StyD4I CCNGG 5 cut(s) 212, 1032, 1078, 1189, 1337
TaaI ACNGT 4 cut(s) 95, 130, 148, 1056
TaqI TCGA 1 cut(s) 492
TasI AATT 8 cut(s) 37, 234, 378, 546, 574, 905, 1205, 1404
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 6 cut(s) 18, 169, 260, 350, 838, 1021
Tru1I TTAA 4 cut(s) 41, 281, 771, 1224
Tru9I TTAA 4 cut(s) 41, 281, 771, 1224
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 1123
TseI GCWGC 5 cut(s) 50, 53, 854, 857, 1334
Tsp45I GTSAC 1 cut(s) 1123
TspDTI ATGAA 2 cut(s) 777, 1296
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 1273
XapI RAATTY 4 cut(s) 37, 234, 546, 905
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.