AT3G02885

gast1 protein homolog 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016512
Physical Location & Seq
Reverse (-)
637921 .. 639242
1322 bp
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UTR
Exon/CDS
Intron
AT3G02885.1

Sequence Viewer

Length: 294 bp
ATGGCGAATTGTATCAGAAGAAATGCTCTTTTCTTCTTGACTCTTCTCTTTTTATTGTCAGTCTCCAACCTCGTTCAGGCTGCTCGTGGTGGTGGCAAACTCAAACCCCAACAGTGCAACTCAAAGTGTAGCTTCCGTTGTTCAGCAACATCACACAAGAAGCCATGCATGTTCTTTTGCCTCAAGTGTTGCAAAAAATGTCTTTGTGTTCCTCCTGGCACTTTCGGCAACAAACAAACTTGTCCATGTTACAACAACTGGAAGACTAAAGAAGGCCGTCCAAAATGTCCTTAA

Protein Analysis

97

Amino Acids

10.84

Weight (kDa)

9.68

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 38 - 97 9.2e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02885
fragaria_vesca FvH4_1g28731
malus_domestica MD09G1263900.v1.1 MD17G1259200.v1.1
prunus_persica Prupe.3G161500_v2.0.a1 Prupe.3G161500_v2.0.a1
pyrus_communis pycom09g17780 pycom17g26050
rosa_chinensis RchiOBHm_Chr3g0493101
rosa_multiflora Rmu_co8296059.1_g000001
rosa_roxburghii Rroxscaffold_6G00391840
rosa_samantha Rh3BG344200 Rh3DG343500
rosa_wichuraiana Rw3G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 76
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 80
BauI CACGAG 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 67
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 276
BspANI GGCC 1 cut(s) 276
BsrI ACTGG 1 cut(s) 263
BssSI CACGAG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 119
CviAII CATG 3 cut(s) 165, 169, 246
CviJI RGCY 4 cut(s) 80, 132, 163, 276
CviKI_1 RGCY 4 cut(s) 80, 132, 163, 276
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 170
FaeI CATG 3 cut(s) 168, 172, 249
FaiI YATR 3 cut(s) 166, 170, 247
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 3 cut(s) 164, 168, 245
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 276
Hin1II CATG 3 cut(s) 168, 172, 249
HinfI GANTC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 117, 168, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
Hsp92II CATG 3 cut(s) 168, 172, 249
LpnPI CCDG 4 cut(s) 62, 201, 228, 244
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 248
MboII GAAGA 4 cut(s) 25, 30, 35, 274
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 3 cut(s) 80, 191, 222
Mph1103I ATGCAT 1 cut(s) 170
MseI TTAA 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 225
NlaIII CATG 3 cut(s) 168, 172, 249
NsiI ATGCAT 1 cut(s) 170
NspI RCATGY 1 cut(s) 172
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 1 cut(s) 81
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 216
SetI ASST 2 cut(s) 72, 134
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 7
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 114
TasI AATT 1 cut(s) 7
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TscAI CASTG 1 cut(s) 119
TseI GCWGC 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 74
XceI RCATGY 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.