FvH4_1g28731

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016512
Physical Location & Seq
Forward (+)
21053438 .. 21054768
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28731.t1

Sequence Viewer

Length: 285 bp
ATGGCTGGACGTCCGTACACGTCTCTCTTGCTGGTTGTGTCTTTGCTTCTTCTAGTCACACTCGCTCCTGTGGCTGAGGCCTACACCAAGCTTCGTCCTAAAGATTGCAAAAAGAAATGTACGTATCGGTGCTCTGCAACATCGCACAAGAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCGCCAAATGCCTTTGTGTTCCTCCTGGCGTCTACGGAAACAAGCAAGTATGCCCTTGCTACAACAACTGGAAGACACAAGAAGGAAAACCCAAATGCCCTTGA

Protein Analysis

95

Amino Acids

10.5

Weight (kDa)

9.38

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 35 - 94 3.1e-24 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02885
fragaria_vesca FvH4_1g28731
malus_domestica MD09G1263900.v1.1 MD17G1259200.v1.1
prunus_persica Prupe.3G161500_v2.0.a1 Prupe.3G161500_v2.0.a1
pyrus_communis pycom09g17780 pycom17g26050
rosa_chinensis RchiOBHm_Chr3g0493101
rosa_multiflora Rmu_co8296059.1_g000001
rosa_roxburghii Rroxscaffold_6G00391840
rosa_samantha Rh3BG344200 Rh3DG343500
rosa_wichuraiana Rw3G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 213
AcyI GRCGYC 2 cut(s) 10, 210
AfaI GTAC 2 cut(s) 17, 121
AflIII ACRYGT 1 cut(s) 18
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 207
BmgBI CACGTC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 10, 210
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 134
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 254
BssNI GRCGYC 2 cut(s) 10, 210
Bst2UI CCWGG 1 cut(s) 207
BstACI GRCGYC 2 cut(s) 10, 210
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 185
BstMAI GTCTC 1 cut(s) 27
BstMWI GCNNNNNNNGC 4 cut(s) 71, 151, 177, 189
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 205
BstSNI TACGTA 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 80
BtgZI GCGATG 1 cut(s) 126
BtrI CACGTC 1 cut(s) 21
CfoI GCGC 1 cut(s) 185
CseI GACGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 16, 120
CviAII CATG 2 cut(s) 156, 160
CviJI RGCY 5 cut(s) 5, 74, 80, 91, 154
CviKI_1 RGCY 5 cut(s) 5, 74, 80, 91, 154
CviQI GTAC 2 cut(s) 16, 120
DdeI CTNAG 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 2 cut(s) 159, 163
FaiI YATR 3 cut(s) 157, 161, 232
FatI CATG 2 cut(s) 155, 159
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 80
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 2 cut(s) 10, 210
Hin1II CATG 2 cut(s) 159, 163
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 18, 214
Hpy8I GTNNAC 2 cut(s) 18, 214
HpyAV CCTTC 1 cut(s) 257
HpyCH4IV ACGT 3 cut(s) 10, 20, 122
HpyCH4V TGCA 3 cut(s) 108, 137, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 151, 177, 189
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 3 cut(s) 10, 20, 122
Hsp92I GRCGYC 2 cut(s) 10, 210
Hsp92II CATG 2 cut(s) 159, 163
HspAI GCGC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 5 cut(s) 17, 81, 192, 219, 235
Lsp1109I GCAGC 1 cut(s) 167
MaeI CTAG 1 cut(s) 53
MaeII ACGT 3 cut(s) 10, 20, 122
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 3 cut(s) 41, 157, 265
MhlI GDGCHC 1 cut(s) 134
MnlI CCTC 2 cut(s) 70, 213
Mph1103I ATGCAT 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 71, 151, 177, 189
NlaIII CATG 2 cut(s) 159, 163
NmuCI GTSAC 1 cut(s) 55
NsiI ATGCAT 1 cut(s) 161
NspI RCATGY 1 cut(s) 163
PceI AGGCCT 1 cut(s) 80
PkrI GCNGC 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
RsaI GTAC 2 cut(s) 17, 121
RsaNI GTAC 2 cut(s) 16, 120
SatI GCNGC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 134
SetI ASST 4 cut(s) 13, 23, 93, 125
SnaBI TACGTA 1 cut(s) 123
SseBI AGGCCT 1 cut(s) 80
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 205
TaiI ACGT 3 cut(s) 13, 23, 125
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 231
XceI RCATGY 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 53
ZraI GACGTC 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.