Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0016512

Physical Location & Seq

Genomic Coordinates Reverse (-)

31947879 .. 31948968

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1259200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCAGGACGTTCCTCCACCTCCGTCTTGCTTCTGGTTTCTCTGCTTCTTCTCCTCGCATTCTCTCACGTAGCTGAGGCTTACAAAACGCTTCCTCAGTCAGCGTGCACACCGAGATGTAAGAACCGTTGCTCGGCGACATCGCACAAGAAGCCGTGCATGTTCTTCTGCGAGAAGTGCTGTGCCAAATGCAAATGTGTTCCTCCAGGCGTCGTTGGCAACAAGCAAATGTGCCCTTGCTACAACAACTGGAAGACCCAGGAAGGACGACCCAAATGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0010286 GO:0014070 GO:0030054 GO:0042221 GO:0042493 GO:0046677 GO:0050896 GO:0055044 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

95

Amino Acids

10.33

Weight (kDa)

9.3

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	36 - 94	7.6e-23	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02885
fragaria_vesca	FvH4_1g28731
malus_domestica	MD09G1263900.v1.1 MD17G1259200.v1.1
prunus_persica	Prupe.3G161500_v2.0.a1 Prupe.3G161500_v2.0.a1
pyrus_communis	pycom09g17780 pycom17g26050
rosa_chinensis	RchiOBHm_Chr3g0493101
rosa_multiflora	Rmu_co8296059.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391840
rosa_samantha	Rh3BG344200 Rh3DG343500
rosa_wichuraiana	Rw3G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	205, 258
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	110
Alw44I	GTGCAC	1 cut(s)	106
ApaLI	GTGCAC	1 cut(s)	106
BaeGI	GKGCMC	2 cut(s)	110, 236
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	1 cut(s)	258
BciT130I	CCWGG	2 cut(s)	207, 260
Bme1390I	CCNGG	2 cut(s)	207, 260
BmrFI	CCNGG	2 cut(s)	207, 260
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	207, 260
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	66, 110
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	110, 236
BsiHKAI	GWGCWC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	110, 236
BspCNI	CTCAG	2 cut(s)	67, 109
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	207, 260
Bst4CI	ACNGT	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	75, 96
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 177, 216
BstNI	CCWGG	2 cut(s)	207, 260
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	205, 258
BstSLI	GKGCMC	2 cut(s)	110, 236
BstV2I	GAAGAC	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	106
CseI	GACGC	1 cut(s)	199
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	3 cut(s)	74, 80, 154
CviKI_1	RGCY	3 cut(s)	74, 80, 154
DdeI	CTNAG	2 cut(s)	75, 96
EcoRII	CCWGG	2 cut(s)	205, 258
FaeI	CATG	1 cut(s)	163
FaiI	YATR	1 cut(s)	161
FatI	CATG	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	108
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	2 cut(s)	10, 69
HpyCH4V	TGCA	3 cut(s)	108, 159, 192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 177, 216
HpyF3I	CTNAG	2 cut(s)	75, 96
HpySE526I	ACGT	2 cut(s)	10, 69
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	163
LpnPI	CCDG	6 cut(s)	20, 192, 219, 235, 245, 272
MaeII	ACGT	2 cut(s)	10, 69
MboII	GAAGA	3 cut(s)	41, 157, 265
MhlI	GDGCHC	2 cut(s)	110, 236
MnlI	CCTC	6 cut(s)	25, 31, 65, 70, 105, 213
MseI	TTAA	1 cut(s)	283
MslI	CAYNNNNRTG	1 cut(s)	115
MspR9I	CCNGG	2 cut(s)	207, 260
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	2 cut(s)	207, 260
MwoI	GCNNNNNNNGC	3 cut(s)	151, 177, 216
NlaIII	CATG	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	113
NspI	RCATGY	1 cut(s)	163
PctI	GAATGC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	205, 258
PspGI	CCWGG	2 cut(s)	205, 258
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	207, 260
SduI	GDGCHC	2 cut(s)	110, 236
SetI	ASST	4 cut(s)	13, 23, 72, 76
SmiMI	CAYNNNNRTG	1 cut(s)	115
StyD4I	CCNGG	2 cut(s)	205, 258
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	2 cut(s)	13, 72
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TspGWI	ACGGA	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.