Rh3DG343500

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0016512
Physical Location & Seq
Forward (+)
38609472 .. 38610715
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG343500.1

Sequence Viewer

Length: 285 bp
ATGGCAGGACGTCCGTACACCTCCCTGCTGCTGCTGCTTTCTCTGCTTCTTCTAGTCACACTCTCTCCTGTGGCTGAGGCTTACACCAAGCTTCGTCCTCAAGATTGCAAACCAAAATGTACGTATCGGTGCTCGGCGACATCGCACAAGAAGCCATGCAAGTTCTTCTGCGAAAAGTGCTGTGCCAAATGCCTTTGTGTACCTCCAGGAACTTACGGCCACAAGCAAGTATGCCCTTGCTACAACAACTGGAAGACCCAAGAAGGAAAACCCAAATGCCCTTGA

Protein Analysis

94

Amino Acids

10.53

Weight (kDa)

9.23

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 35 - 94 1.4e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02885
fragaria_vesca FvH4_1g28731
malus_domestica MD09G1263900.v1.1 MD17G1259200.v1.1
prunus_persica Prupe.3G161500_v2.0.a1 Prupe.3G161500_v2.0.a1
pyrus_communis pycom09g17780 pycom17g26050
rosa_chinensis RchiOBHm_Chr3g0493101
rosa_multiflora Rmu_co8296059.1_g000001
rosa_roxburghii Rroxscaffold_6G00391840
rosa_samantha Rh3BG344200 Rh3DG343500
rosa_wichuraiana Rw3G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 3 cut(s) 17, 121, 201
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 1 cut(s) 134
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 28, 31, 34
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 3 cut(s) 15, 18, 21
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 53
BisI GCNGC 3 cut(s) 29, 32, 35
BlsI GCNGC 3 cut(s) 30, 33, 36
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 260
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 15, 18, 21
BshFI GGCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 134
BsnI GGCC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 134
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 254
BssNI GRCGYC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 75
BstMWI GCNNNNNNNGC 4 cut(s) 34, 43, 151, 177
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSNI TACGTA 1 cut(s) 123
BstV1I GCAGC 3 cut(s) 15, 18, 21
BstV2I GAAGAC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 126
Csp6I GTAC 3 cut(s) 16, 120, 200
CviAII CATG 1 cut(s) 156
CviJI RGCY 5 cut(s) 74, 80, 91, 154, 219
CviKI_1 RGCY 5 cut(s) 74, 80, 91, 154, 219
CviQI GTAC 3 cut(s) 16, 120, 200
DdeI CTNAG 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 217
Eco105I TACGTA 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 159
FaiI YATR 2 cut(s) 157, 232
FatI CATG 1 cut(s) 155
Fnu4HI GCNGC 3 cut(s) 29, 32, 35
Fsp4HI GCNGC 3 cut(s) 29, 32, 35
FspBI CTAG 1 cut(s) 53
GluI GCNGC 3 cut(s) 29, 32, 35
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 18, 200
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 2 cut(s) 18, 200
HpyAV CCTTC 1 cut(s) 257
HpyCH4IV ACGT 2 cut(s) 10, 122
HpyCH4V TGCA 2 cut(s) 108, 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 43, 151, 177
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 10, 122
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 159
LpnPI CCDG 5 cut(s) 38, 81, 192, 219, 235
Lsp1109I GCAGC 3 cut(s) 15, 18, 21
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 10, 122
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 3 cut(s) 41, 157, 265
MhlI GDGCHC 1 cut(s) 134
MnlI CCTC 4 cut(s) 31, 70, 108, 213
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 34, 43, 151, 177
NlaIII CATG 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 3 cut(s) 30, 33, 36
Ppu21I YACGTR 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
RsaI GTAC 3 cut(s) 17, 121, 201
RsaNI GTAC 3 cut(s) 16, 120, 200
SatI GCNGC 3 cut(s) 29, 32, 35
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 1 cut(s) 134
SetI ASST 5 cut(s) 13, 23, 93, 125, 205
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
SnaBI TACGTA 1 cut(s) 123
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 205
TaiI ACGT 2 cut(s) 13, 125
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 28, 31, 34
Tsp45I GTSAC 1 cut(s) 55
XspI CTAG 1 cut(s) 53
ZraI GACGTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.