pycom09g17780

Gibberellin regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016512
Physical Location & Seq
Reverse (-)
18267676 .. 18268428
753 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17780.1

Sequence Viewer

Length: 285 bp
ATGGCAGCAAGTCGATACACCTCCGTCTTGATCCTGGTTTCTCTGCTTGTTCTACTCACATTCTCTCACGTAGCTGAGGCTTACAAGACGCTTCCTCAGTCAGCGTGCACACCGAGATGTAAGAACCGTTGCTCGGCGACATCGCACAAGAAGCCGTGCATGTTCTTCTGCGAGAAGTGCTGTGCCAAATGCAAATGTGTTCCTCCGGGCGTCGTTGGCAACAAGCAAATGTGCCCTTGCTACAACAACTGGAAGACCCAAGAAGGACGACCCAAATGCCCTTAA

Protein Analysis

95

Amino Acids

10.44

Weight (kDa)

9.28

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 36 - 94 7.6e-23 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02885
fragaria_vesca FvH4_1g28731
malus_domestica MD09G1263900.v1.1 MD17G1259200.v1.1
prunus_persica Prupe.3G161500_v2.0.a1 Prupe.3G161500_v2.0.a1
pyrus_communis pycom09g17780 pycom17g26050
rosa_chinensis RchiOBHm_Chr3g0493101
rosa_multiflora Rmu_co8296059.1_g000001
rosa_roxburghii Rroxscaffold_6G00391840
rosa_samantha Rh3BG344200 Rh3DG343500
rosa_wichuraiana Rw3G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 133
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 110
Alw44I GTGCAC 1 cut(s) 106
AlwI GGATC 1 cut(s) 25
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 207
BaeGI GKGCMC 2 cut(s) 110, 236
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 35
BcnI CCSGG 1 cut(s) 207
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 35, 207
BmrFI CCNGG 2 cut(s) 35, 207
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 66, 110
BseNI ACTGG 1 cut(s) 254
BseSI GKGCMC 2 cut(s) 110, 236
BseXI GCAGC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 110, 236
Bsp143I GATC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 67, 109
BspPI GGATC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 254
BssMI GATC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 75, 96
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 151, 177, 216
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 33, 205
BstSLI GKGCMC 2 cut(s) 110, 236
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 106
CseI GACGC 2 cut(s) 97, 199
CviAII CATG 1 cut(s) 160
CviJI RGCY 3 cut(s) 74, 80, 154
CviKI_1 RGCY 3 cut(s) 74, 80, 154
DdeI CTNAG 2 cut(s) 75, 96
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 163
FaiI YATR 1 cut(s) 161
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 206
HgaI GACGC 2 cut(s) 97, 199
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 1 cut(s) 163
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 108
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 108, 159, 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 177, 216
HpyF3I CTNAG 2 cut(s) 75, 96
HpySE526I ACGT 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 1 cut(s) 163
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 4 cut(s) 20, 47, 219, 235
Lsp1109I GCAGC 1 cut(s) 17
MaeII ACGT 1 cut(s) 69
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 157, 265
MhlI GDGCHC 2 cut(s) 110, 236
MnlI CCTC 4 cut(s) 31, 70, 105, 213
MseI TTAA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 115
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 35, 207
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 151, 177, 216
NciI CCSGG 1 cut(s) 207
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 163
NmeAIII GCCGAG 1 cut(s) 113
NspI RCATGY 1 cut(s) 163
PkrI GCNGC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 30
ScrFI CCNGG 2 cut(s) 35, 207
SduI GDGCHC 2 cut(s) 110, 236
SetI ASST 3 cut(s) 23, 72, 76
SmiMI CAYNNNNRTG 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 33, 205
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 72
TaqI TCGA 1 cut(s) 13
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseI GCWGC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 13
VneI GTGCAC 1 cut(s) 106
XceI RCATGY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.