AT3G02960

Heavy metal-associated isoprenylated plant protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
667245 .. 668626
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02960.1

Sequence Viewer

Length: 741 bp
ATGGGAAAGAACAAGCAAAATGGAGAATCAGACAACAAGTCTGAAAAGAAGAACCAGAAAAATGGAGATTCATCAGTCGATAAGTCTGATAAGAAAAATCAATGTAAAGAAATTGTTCTGAAGGTTTACATGCACTGTGAAGGATGTGCATCACAAGTTTCTCATTGCTTGAGGGGCTATGATGGGGTTGAGCATATTAAGACAGAGATAGGAGACAATAAAGTTGTTGTGTCTGGAAAATTTGATGATCCGTTGAAGATATTACGAAGAGTGCAAAAGAAATTTAGTAGAAATGCTGAGATGATTTCCCCAAAACATAACCCTAAACAAGATCAGAAGGAGCCACAGCAAAAGAAAGAAAGTGCTCCCGAGATCAAAACTGCAATTTTAAGAATGAACATGCACTGTGAAGGATGTGTTCATGAAATCAAAAGAGGCATTGAAAAAATAAAAGGCATTCAATCGGTGGAACCAGACCGGTCAAAGTCAACGGTAGTGGTACGAGGAGTCATGGATCCTCCAAAACTTGTGGAGAAAATCAAGAAAAAACTTGGGAAACATGCAGAGCTTCTAAGTCAAATTACAGAGAAAGGCAAAGACAATAATAAGAAGAACAATAATAAGAAGGAAGAAAGTGATGGAAACAAAATCTTTAGTTACCCTCCTCAGTATTCATCTCAACATGCTTATCCCTCTCAGATTTTTAGCGACGAAAATGTACATTCTTGTTCAATCATGTGA

Protein Analysis

246

Amino Acids

27.87

Weight (kDa)

9.35

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 42 - 94 2.5e-07 Heavy-metal-associated domain
HMA PF00403 131 - 186 8.7e-15 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02960
fragaria_vesca FvH4_2g00760
malus_domestica MD05G1003300.v1.1 MD10G1004300.v1.1
prunus_persica Prupe.1G222400_v2.0.a1 Prupe.8G006700_v2.0.a1
pyrus_communis pycom05g00300
rosa_chinensis RchiOBHm_Chr6g0251141
rosa_laevigata RLG00000015480
rosa_roxburghii Rroxscaffold_7G00217000
rosa_samantha Rh6AG009600 Rh6BG002300 Rh6DG006700
rosa_wichuraiana Rw6G000960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 242, 509, 522
AcsI RAATTY 2 cut(s) 239, 281
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 501, 720
AgeI ACCGGT 1 cut(s) 477
AgsI TTSAA 4 cut(s) 256, 443, 461, 732
AhdI GACNNNNNGTC 1 cut(s) 37
AluBI AGCT 1 cut(s) 568
AluI AGCT 1 cut(s) 568
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 3 cut(s) 242, 509, 522
Ama87I CYCGRG 1 cut(s) 368
ApoI RAATTY 2 cut(s) 239, 281
AsiGI ACCGGT 1 cut(s) 477
Asp700I GAANNNNTTC 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 368
BamHI GGATCC 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 367
BccI CCATC 2 cut(s) 176, 632
BcoDI GTCTC 1 cut(s) 207
BmeRI GACNNNNNGTC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 368
BmiI GGNNCC 3 cut(s) 342, 471, 516
BmsI GCATC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 477
Bse118I RCCGGY 1 cut(s) 477
Bse3DI GCAATG 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 148
BseGI GGATG 2 cut(s) 149, 419
BseJI GATNNNNATC 1 cut(s) 148
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 3 cut(s) 288, 680, 710
BseRI GAGGAG 2 cut(s) 519, 654
BshTI ACCGGT 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 367
Bsp1407I TGTACA 1 cut(s) 718
Bsp143I GATC 4 cut(s) 247, 331, 372, 514
BspCNI CTCAG 3 cut(s) 289, 679, 709
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 3 cut(s) 342, 471, 516
BspPI GGATC 3 cut(s) 242, 509, 522
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 477
BsrGI TGTACA 1 cut(s) 718
BssAI RCCGGY 1 cut(s) 477
BssMI GATC 4 cut(s) 247, 331, 372, 514
Bst4CI ACNGT 3 cut(s) 137, 407, 493
Bst6I CTCTTC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 718
BstDEI CTNAG 4 cut(s) 297, 572, 666, 696
BstF5I GGATG 2 cut(s) 149, 419
BstKTI GATC 4 cut(s) 250, 334, 375, 517
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 4 cut(s) 247, 331, 372, 514
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNSI RCATGY 4 cut(s) 133, 403, 563, 686
BstX2I RGATCY 1 cut(s) 514
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 1 cut(s) 514
BtsCI GGATG 2 cut(s) 149, 419
BtsIMutI CAGTG 2 cut(s) 133, 403
CciI TCATGA 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 477
Csp6I GTAC 2 cut(s) 500, 719
CspAI ACCGGT 1 cut(s) 477
CspCI CAANNNNNGTGG 4 cut(s) 477, 510, 512, 545
CviAII CATG 7 cut(s) 130, 400, 422, 511, 560, 683, 736
CviJI RGCY 3 cut(s) 177, 343, 568
CviKI_1 RGCY 3 cut(s) 177, 343, 568
CviQI GTAC 2 cut(s) 500, 719
DdeI CTNAG 4 cut(s) 297, 572, 666, 696
DpnI GATC 4 cut(s) 249, 333, 374, 516
DpnII GATC 4 cut(s) 247, 331, 372, 514
DriI GACNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 262
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 368
FaeI CATG 7 cut(s) 133, 403, 425, 514, 563, 686, 739
FatI CATG 7 cut(s) 129, 399, 421, 510, 559, 682, 735
FokI GGATG 2 cut(s) 156, 426
HapII CCGG 1 cut(s) 478
Hin1II CATG 7 cut(s) 133, 403, 425, 514, 563, 686, 739
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 3 cut(s) 26, 68, 507
HpaII CCGG 1 cut(s) 478
Hpy166II GTNNAC 2 cut(s) 127, 489
Hpy188I TCNGA 6 cut(s) 31, 43, 88, 120, 336, 699
Hpy188III TCNNGA 4 cut(s) 234, 368, 422, 541
Hpy8I GTNNAC 2 cut(s) 127, 489
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 5 cut(s) 115, 134, 331, 404, 619
HpyCH4III ACNGT 3 cut(s) 137, 407, 493
HpyCH4V TGCA 6 cut(s) 133, 149, 274, 383, 403, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 4 cut(s) 297, 572, 666, 696
Hsp92II CATG 7 cut(s) 133, 403, 425, 514, 563, 686, 739
Kzo9I GATC 4 cut(s) 247, 331, 372, 514
LmnI GCTCC 2 cut(s) 340, 370
LpnPI CCDG 4 cut(s) 68, 219, 486, 491
LweI GCATC 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 656
MalI GATC 4 cut(s) 249, 333, 374, 516
MboI GATC 4 cut(s) 247, 331, 372, 514
MboII GAAGA 5 cut(s) 61, 268, 279, 622, 641
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 5 cut(s) 111, 239, 281, 384, 579
MlyI GAGTC 1 cut(s) 516
MnlI CCTC 7 cut(s) 165, 428, 497, 528, 672, 675, 703
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 198, 389
MspI CCGG 1 cut(s) 478
Mva1269I GAATGC 1 cut(s) 456
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 4 cut(s) 247, 331, 372, 514
NlaIII CATG 7 cut(s) 133, 403, 425, 514, 563, 686, 739
NlaIV GGNNCC 3 cut(s) 342, 471, 516
NspI RCATGY 4 cut(s) 133, 403, 563, 686
PagI TCATGA 1 cut(s) 421
PctI GAATGC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 26, 68
PinAI ACCGGT 1 cut(s) 477
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PspN4I GGNNCC 3 cut(s) 342, 471, 516
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 2 cut(s) 501, 720
RsaNI GTAC 2 cut(s) 500, 719
SaqAI TTAA 2 cut(s) 198, 389
Sau3AI GATC 4 cut(s) 247, 331, 372, 514
SchI GAGTC 1 cut(s) 516
SduI GDGCHC 1 cut(s) 367
SetI ASST 2 cut(s) 126, 570
SfaNI GCATC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 5 cut(s) 111, 239, 281, 384, 579
TaaI ACNGT 3 cut(s) 137, 407, 493
TaqI TCGA 1 cut(s) 78
TasI AATT 5 cut(s) 111, 239, 281, 384, 579
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 2 cut(s) 26, 68
Tru1I TTAA 2 cut(s) 198, 389
Tru9I TTAA 2 cut(s) 198, 389
TscAI CASTG 2 cut(s) 140, 410
TspDTI ATGAA 5 cut(s) 60, 410, 410, 438, 663
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 2 cut(s) 140, 410
XapI RAATTY 2 cut(s) 239, 281
XceI RCATGY 4 cut(s) 133, 403, 563, 686
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.