Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016700

Physical Location & Seq

Genomic Coordinates Forward (+)

712188 .. 712967

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAGAGAAGAATTGTGATTCCAGCAAAGAAATTGTGTTGAAAGTTTTAATGCATTGTGAAGGATGCAAAAGTAAGGTTTCCAGTTGCTTGAGATGTTTTGAAGGTGTTGAAGAGGTTGTGGTTGATTATCCAAACAACAGAGTGGTTGTGAAAGGAAAAAGGGCTGATCCATTGAAGGTTTTGGAGAGAGTTCAAAAGAAGTATAGCAGAAATGCTGAACTTATATCTCCCAAACTAAAACCAGAAAACAAAGAGAAAAGGCAGCCAGAAAAGAAAGAAGTGATTCAAGTTGAGGACTTAGCATACATGATTGATCTTGTAGTTTCACAATCCGAACTGTGTTTTTTCGAACTATTCAGTTCTCTGTTTGGTATTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

128

Amino Acids

14.67

Weight (kDa)

6.61

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	17 - 67	6.1e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02960
fragaria_vesca	FvH4_2g00760
malus_domestica	MD05G1003300.v1.1 MD10G1004300.v1.1
prunus_persica	Prupe.1G222400_v2.0.a1 Prupe.8G006700_v2.0.a1
pyrus_communis	pycom05g00300
rosa_chinensis	RchiOBHm_Chr6g0251141
rosa_laevigata	RLG00000015480
rosa_roxburghii	Rroxscaffold_7G00217000
rosa_samantha	Rh6AG009600 Rh6BG002300 Rh6DG006700
rosa_wichuraiana	Rw6G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	164
AgsI	TTSAA	6 cut(s)	43, 104, 113, 178, 197, 290
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	285
AsuII	TTCGAA	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	169, 316
BspPI	GGATC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	169, 316
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	172, 319
BstMBI	GATC	2 cut(s)	169, 316
BstV1I	GCAGC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	71
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	2 cut(s)	167, 268
CviKI_1	RGCY	2 cut(s)	167, 268
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	2 cut(s)	171, 318
DpnII	GATC	2 cut(s)	169, 316
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	57
FaeI	CATG	1 cut(s)	313
FaiI	YATR	4 cut(s)	207, 227, 307, 311
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	313
HinfI	GANTC	2 cut(s)	20, 286
Hpy188I	TCNGA	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	56, 98, 172
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	55, 69
HpyF3I	CTNAG	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	169, 316
LpnPI	CCDG	4 cut(s)	37, 97, 258, 282
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	56
MalI	GATC	2 cut(s)	171, 318
MboI	GATC	2 cut(s)	169, 316
MboII	GAAGA	2 cut(s)	22, 125
MluCI	AATT	2 cut(s)	13, 33
MnlI	CCTC	2 cut(s)	109, 289
Mph1103I	ATGCAT	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	50, 385
NdeII	GATC	2 cut(s)	169, 316
NlaIII	CATG	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	20, 286
PkrI	GCNGC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	50, 385
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	169, 316
SetI	ASST	4 cut(s)	81, 109, 120, 183
SfaNI	GCATC	1 cut(s)	56
SfuI	TTCGAA	1 cut(s)	351
SgeI	CNNG	8 cut(s)	36, 96, 103, 257, 281, 302, 322, 332
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	2 cut(s)	13, 33
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	13, 33
TfiI	GAWTC	2 cut(s)	20, 286
Tru1I	TTAA	2 cut(s)	50, 385
Tru9I	TTAA	2 cut(s)	50, 385
TseI	GCWGC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.