Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0016700

Physical Location & Seq

Genomic Coordinates Forward (+)

723592 .. 724753

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1004300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAGAGAGAAAAGAAATTGTGTTGAAAGTATTAATGCATTGTGAAGGATGCCAAAGTCAGGTTTCCAAATGTTTGACGAGTTTTGAAGGCGTTGAGGAAGTTGTGGTTGATTACCCAAATCATAAAGTGACAGTAAAGGGGAAGAACGCCGACCCTCTGAAGGTTTTGGAGAGACTACAAAACAAGTTTAGTAGGAATGCTCAACTCATATCTCCAATACCAAAACCACAAAACCAAGGGCCAAAAGAGCCCAAAAAGAAAGAAGCGGCTACGCCTGAGGTTAAAGTTGTGGTGCTCAAAACGTTGATGCATTGCGAAGGATGTGCAATTGATATTAAGAAATACTTGGAGAAAATGAAAGGTGTTCTAAGTGTGGAAGCGAACATGGAGAGGTCGACGGTGAGAGTGAGGGGAATAGTTGAAGCAGCAAAGCTGGTAAACTACTTAAAGAAGGAATTAGGGAAGCATGCTGAGATAGTGAAGCAAGAACAAGATGAGAAGAAAGAGCAAGGCAAGGACAGCGGTAACAACAATTACAGAAGCCGAGGAGGAGGAGGAGGAGAATGTGTGTTCCAATATCCACCTCAATATTCAGCTCAACACAATTACCCTTGTCAAACATTTAGCGATGAAAATCCTTTTGCATGTTCCATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

221

Amino Acids

24.67

Weight (kDa)

8.9

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	12 - 63	3.2e-11	Heavy-metal-associated domain
HMA	PF00403	104 - 156	1.8e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02960
fragaria_vesca	FvH4_2g00760
malus_domestica	MD05G1003300.v1.1 MD10G1004300.v1.1
prunus_persica	Prupe.1G222400_v2.0.a1 Prupe.8G006700_v2.0.a1
pyrus_communis	pycom05g00300
rosa_chinensis	RchiOBHm_Chr6g0251141
rosa_laevigata	RLG00000015480
rosa_roxburghii	Rroxscaffold_7G00217000
rosa_samantha	Rh6AG009600 Rh6BG002300 Rh6DG006700
rosa_wichuraiana	Rw6G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	2 cut(s)	269, 525
AclI	AACGTT	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	61, 163
AgsI	TTSAA	3 cut(s)	28, 89, 425
AluBI	AGCT	2 cut(s)	436, 599
AluI	AGCT	2 cut(s)	436, 599
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	428
AseI	ATTAAT	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	440
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BcoDI	GTCTC	1 cut(s)	169
BisI	GCNGC	2 cut(s)	270, 429
BlsI	GCNGC	2 cut(s)	271, 430
BmgT120I	GGNCC	1 cut(s)	242
BmsI	GCATC	2 cut(s)	41, 300
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	238, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 163
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	238, 547
BseGI	GGATG	2 cut(s)	56, 329
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	61, 163
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	270, 465
BseRI	GAGGAG	5 cut(s)	564, 567, 570, 573, 576
BseXI	GCAGC	1 cut(s)	440
BshFI	GGCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	61, 163
BsmAI	GTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	255, 300
BspACI	CCGC	2 cut(s)	269, 525
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	271, 466
BsrDI	GCAATG	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	238, 547
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	136, 403
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	3 cut(s)	279, 371, 474
BstF5I	GGATG	2 cut(s)	56, 329
BstMAI	GTCTC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 522
BstNSI	RCATGY	2 cut(s)	473, 651
BstV1I	GCAGC	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	2 cut(s)	56, 329
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	242
CviAII	CATG	3 cut(s)	388, 470, 648
CviJI	RGCY	6 cut(s)	244, 253, 272, 436, 546, 599
CviKI_1	RGCY	6 cut(s)	244, 253, 272, 436, 546, 599
DdeI	CTNAG	3 cut(s)	279, 371, 474
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	182
Eco81I	CCTNAGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	2 cut(s)	42, 315
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	391, 473, 651
FaiI	YATR	6 cut(s)	126, 212, 389, 471, 649, 656
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	3 cut(s)	387, 469, 647
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	270, 429
FokI	GGATG	2 cut(s)	63, 336
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	270, 429
GluI	GCNGC	2 cut(s)	270, 429
HaeIII	GGCC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	391, 473, 651
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	2 cut(s)	399, 442
Hpy188I	TCNGA	1 cut(s)	162
Hpy8I	GTNNAC	2 cut(s)	399, 442
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	5 cut(s)	41, 83, 157, 314, 448
HpyCH4III	ACNGT	2 cut(s)	136, 403
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	40, 313, 329, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 522
HpyF3I	CTNAG	3 cut(s)	279, 371, 474
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	391, 473, 651
LpnPI	CCDG	3 cut(s)	47, 291, 422
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	41, 300
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	130, 527
MboII	GAAGA	2 cut(s)	157, 514
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	255, 300
MluCI	AATT	5 cut(s)	18, 330, 458, 535, 607
Mph1103I	ATGCAT	2 cut(s)	42, 315
MseI	TTAA	4 cut(s)	35, 285, 339, 449
MspA1I	CMGCKG	1 cut(s)	525
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	250, 522
NlaIII	CATG	3 cut(s)	391, 473, 651
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	1 cut(s)	130
NsiI	ATGCAT	2 cut(s)	42, 315
NspI	RCATGY	2 cut(s)	473, 651
PaeI	GCATGC	1 cut(s)	473
PctI	GAATGC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	271, 430
PshBI	ATTAAT	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	242
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	4 cut(s)	35, 285, 339, 449
SatI	GCNGC	2 cut(s)	270, 429
Sau96I	GGNCC	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	255, 300
SetI	ASST	9 cut(s)	66, 168, 285, 308, 367, 398, 438, 589, 601
SfaNI	GCATC	2 cut(s)	41, 300
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	5 cut(s)	18, 330, 458, 535, 607
SsiI	CCGC	2 cut(s)	269, 525
SspI	AATATT	1 cut(s)	593
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	136, 403
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	398
TasI	AATT	5 cut(s)	18, 330, 458, 535, 607
TauI	GCSGC	1 cut(s)	272
Tru1I	TTAA	4 cut(s)	35, 285, 339, 449
Tru9I	TTAA	4 cut(s)	35, 285, 339, 449
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	374, 648
VspI	ATTAAT	1 cut(s)	35
XceI	RCATGY	2 cut(s)	473, 651
XmiI	GTMKAC	1 cut(s)	398
Zsp2I	ATGCAT	2 cut(s)	42, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.