Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016700

Physical Location & Seq

Genomic Coordinates Forward (+)

524060 .. 525018

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCAGAGAGAAATACTAATTCCGGCAAAGAAATTGTGTTGAAAGTATTAATGCATTGTGAAGGATGCCAAAGTAAGGTTTCCAATTGCCTGAGAGGTTTAGAAGGCGTTGAAGAGGTTGTAGTTGATTATCCAAATCATAAAGTGACTGTAAAGGGAAAAAAGGCAGACCCGTTAAAGGTTTTGGAGAGAGTACAGAAGAAGTGTAGTAGAAATGCTGAGCTCATATCTCCAAAACCAAAACCAGAAAACAGAGACAAGAAGGAGCCAGAAAAGAAAGAATCGGCTCAGCCTCAGGTGAAAGTTGTGGTGCTCAAAATGTTGTTGCATTGCCAAGGCTGTGCAAATGATGTTAAGAAATACTTGGAGAGAATGAAAGGTGTTCTAAATGTAGAAGCAAATATGGCGAGCTCAAGGGTGACAGTGAGGGGAGTAGTTGATCCACCAAAGCTGATAGAATACATCAAGAAAAAATTAGGGAAGCATGCTGAGATTGTGAAGCAAGAACAAGGCGGAGGAGGGGATAAAGGGCAAGGCAAAGACAATAAGAAAGGCCCAGAAGCAGGGGGATATATATTCCAATACCCTCCTCAATATTCAACTCAACATATTTACCCTAGTCAAGCATTTAGTGATGATAACCCTTTTGCATGTTCCATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

222

Amino Acids

24.56

Weight (kDa)

9.3

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02960
fragaria_vesca	FvH4_2g00760
malus_domestica	MD05G1003300.v1.1 MD10G1004300.v1.1
prunus_persica	Prupe.1G222400_v2.0.a1 Prupe.8G006700_v2.0.a1
pyrus_communis	pycom05g00300
rosa_chinensis	RchiOBHm_Chr6g0251141
rosa_laevigata	RLG00000015480
rosa_roxburghii	Rroxscaffold_7G00217000
rosa_samantha	Rh6AG009600 Rh6BG002300 Rh6DG006700
rosa_wichuraiana	Rw6G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	76, 178, 563
AgsI	TTSAA	3 cut(s)	43, 113, 600
AluBI	AGCT	3 cut(s)	223, 411, 451
AluI	AGCT	3 cut(s)	223, 411, 451
Alw21I	GWGCWC	3 cut(s)	225, 315, 413
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	553
AseI	ATTAAT	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	2 cut(s)	310, 430
AxyI	CCTNAGG	1 cut(s)	294
BanII	GRGCYC	2 cut(s)	225, 413
Bbv12I	GWGCWC	3 cut(s)	225, 315, 413
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	618
BlpI	GCTNAGC	2 cut(s)	219, 288
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	56
Bpu1102I	GCTNAGC	2 cut(s)	219, 288
BpuEI	CTTGAG	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 178, 563
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	3 cut(s)	76, 178, 563
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	5 cut(s)	83, 210, 302, 308, 480
BseRI	GAGGAG	2 cut(s)	531, 579
BshFI	GGCC	1 cut(s)	555
BsiHKAI	GWGCWC	3 cut(s)	225, 315, 413
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	76, 178, 563
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	3 cut(s)	225, 315, 413
Bsp143I	GATC	1 cut(s)	439
Bsp1720I	GCTNAGC	2 cut(s)	219, 288
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	5 cut(s)	84, 211, 301, 307, 481
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	151, 424
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	409, 486
BstDEI	CTNAG	5 cut(s)	92, 219, 288, 294, 489
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	488, 654
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	409, 486
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	2 cut(s)	485, 651
CviJI	RGCY	8 cut(s)	223, 268, 287, 292, 339, 411, 451, 555
CviKI_1	RGCY	8 cut(s)	223, 268, 287, 292, 339, 411, 451, 555
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	5 cut(s)	92, 219, 288, 294, 489
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	528
Ecl136II	GAGCTC	2 cut(s)	223, 411
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	225, 413
Eco53kI	GAGCTC	2 cut(s)	223, 411
Eco81I	CCTNAGG	1 cut(s)	294
EcoICRI	GAGCTC	2 cut(s)	223, 411
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	225, 413
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	488, 654
FaiI	YATR	9 cut(s)	141, 227, 404, 486, 573, 575, 609, 652, 659
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	2 cut(s)	484, 650
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	2 cut(s)	225, 413
FspBI	CTAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	2 cut(s)	488, 654
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	310, 430
Hpy188III	TCNNGA	1 cut(s)	466
HpyAV	CCTTC	3 cut(s)	56, 98, 256
HpyCH4III	ACNGT	2 cut(s)	151, 424
HpyCH4V	TGCA	4 cut(s)	55, 328, 344, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	5 cut(s)	92, 219, 288, 294, 489
Hsp92II	CATG	2 cut(s)	488, 654
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	37, 104, 258, 281, 282, 549, 570
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	145, 418
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	2 cut(s)	125, 211
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	3 cut(s)	225, 315, 413
MluCI	AATT	4 cut(s)	19, 33, 85, 473
MnlI	CCTC	8 cut(s)	89, 109, 303, 420, 509, 512, 597, 600
Mph1103I	ATGCAT	1 cut(s)	57
MseI	TTAA	3 cut(s)	50, 176, 354
MspI	CCGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	2 cut(s)	488, 654
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	145, 418
NsiI	ATGCAT	1 cut(s)	57
NspI	RCATGY	2 cut(s)	488, 654
PaeI	GCATGC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	50
Psp124BI	GAGCTC	2 cut(s)	225, 413
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	554
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SacI	GAGCTC	2 cut(s)	225, 413
SaqAI	TTAA	3 cut(s)	50, 176, 354
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	1 cut(s)	554
SduI	GDGCHC	3 cut(s)	225, 315, 413
SetI	ASST	9 cut(s)	81, 100, 120, 183, 225, 300, 382, 413, 453
SfaNI	GCATC	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	412
SmoI	CTYRAG	1 cut(s)	412
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	4 cut(s)	19, 33, 85, 473
SsiI	CCGC	1 cut(s)	513
SspI	AATATT	1 cut(s)	596
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	2 cut(s)	225, 413
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	151, 424
TasI	AATT	4 cut(s)	19, 33, 85, 473
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	50, 176, 354
Tru9I	TTAA	3 cut(s)	50, 176, 354
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	145, 418
Tsp45I	GTSAC	2 cut(s)	145, 418
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	429
VspI	ATTAAT	1 cut(s)	50
XceI	RCATGY	2 cut(s)	488, 654
XspI	CTAG	1 cut(s)	618
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.