AT3G03170

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015084
Physical Location & Seq
Forward (+)
731862 .. 732914
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03170.1

Sequence Viewer

Length: 471 bp
ATGCACTATCAAGAACAGATGGAGTCTCTTATGTTGGGTGAAGAACGCAGACGCGGAAACTACACCAGAGACGTAGACGCGGACGCAGATGAAGGTGTTAACTCTCCCTCTTCTTTTCCAAACTCCCCTGATGATTCGGACCGTCGCAGTTCTTCTTCTTCTTCAAGGAGAGGATTGTCGAAACATTACAAAGGTAAATCACAATCGTTCACAACGTTGGCAGAAGCGCTAACTGTGGAAGATCTCGCGAAGCCTGAGAATCCATTCAACGCAAAGCTGAAGCAGCGACGAGAGAGCCCTCACTGTCGTAGATTATCAGGATGCGGCGGCGCATCGGAGCGAAATTTAAGTGTCCACGACGTTTTTCTCGCTGGGAACGATAGACCGCCGCGACTTTCCGGTAACAGACCGCCTCCGAGAGCCCAGACGCTCTCGGCGGCTCATATTTCGGCTTTGCTCACTCGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.27

Weight (kDa)

9.34

Isoelectric Point (pI)

80.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03170
fragaria_vesca FvH4_2g09740
malus_domestica MD05G1060500.v1.1 MD10G1068400.v1.1
prunus_persica Prupe.8G090300_v2.0.a1
pyrus_communis pycom10g05430
rosa_chinensis RchiOBHm_Chr6g0266031
rosa_multiflora Rmu_sc0000776.1_g000023
rosa_roxburghii Rroxscaffold_174G00435150 Rroxscaffold_7G00202050
rosa_rugosa Rorug06G0022900
rosa_samantha Rh6AG144000 Rh6BG144500 Rh6CG141000 Rh6DG128900
rosa_wichuraiana Rw6G012440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AccII CGCG 4 cut(s) 54, 80, 248, 391
AciI CCGC 8 cut(s) 54, 80, 324, 327, 386, 389, 410, 437
AclI AACGTT 1 cut(s) 215
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 299
AfeI AGCGCT 1 cut(s) 228
AgsI TTSAA 2 cut(s) 165, 268
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 30, 63
Aor51HI AGCGCT 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 2 cut(s) 229, 332
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 139
BanII GRGCYC 2 cut(s) 299, 424
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 30, 63
BfoI RGCGCY 1 cut(s) 230
BglII AGATCT 1 cut(s) 241
BisI GCNGC 5 cut(s) 284, 325, 328, 389, 438
BlsI GCNGC 5 cut(s) 285, 326, 329, 390, 439
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmsI GCATC 2 cut(s) 311, 341
BsaWI WCCGGW 1 cut(s) 398
BseGI GGATG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 371
Bsh1236I CGCG 4 cut(s) 54, 80, 248, 391
BsiSI CCGG 1 cut(s) 399
BsmAI GTCTC 2 cut(s) 30, 63
BsmBI CGTCTC 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 299, 424
Bsp143I GATC 1 cut(s) 241
Bsp68I TCGCGA 1 cut(s) 248
BspACI CCGC 8 cut(s) 54, 80, 324, 327, 386, 389, 410, 437
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 4 cut(s) 54, 80, 248, 391
BssMI GATC 1 cut(s) 241
Bst4CI ACNGT 3 cut(s) 143, 235, 305
Bst6I CTCTTC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 326
BstFNI CGCG 4 cut(s) 54, 80, 248, 391
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 2 cut(s) 229, 332
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 30, 63
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstUI CGCG 4 cut(s) 54, 80, 248, 391
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtsCI GGATG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 301
BtuMI TCGCGA 1 cut(s) 248
CfoI GCGC 2 cut(s) 229, 332
Cfr13I GGNCC 1 cut(s) 139
CpoI CGGWCCG 1 cut(s) 139
CseI GACGC 4 cut(s) 60, 86, 92, 436
CspI CGGWCCG 1 cut(s) 139
CviJI RGCY 6 cut(s) 253, 277, 297, 422, 440, 452
CviKI_1 RGCY 6 cut(s) 253, 277, 297, 422, 440, 452
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 299, 424
Eco47I GGWCC 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 299
EcoT38I GRGCYC 2 cut(s) 299, 424
Esp3I CGTCTC 1 cut(s) 63
FaiI YATR 2 cut(s) 32, 444
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 5 cut(s) 284, 325, 328, 389, 438
FokI GGATG 1 cut(s) 333
FriOI GRGCYC 2 cut(s) 299, 424
Fsp4HI GCNGC 5 cut(s) 284, 325, 328, 389, 438
GlaI GCGC 2 cut(s) 228, 331
GluI GCNGC 5 cut(s) 284, 325, 328, 389, 438
GsaI CCCAGC 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 230
HapII CCGG 1 cut(s) 399
HgaI GACGC 4 cut(s) 60, 86, 92, 436
HhaI GCGC 2 cut(s) 229, 332
Hin6I GCGC 2 cut(s) 227, 330
HinP1I GCGC 2 cut(s) 227, 330
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 3 cut(s) 23, 134, 259
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 4 cut(s) 76, 100, 210, 355
Hpy188I TCNGA 3 cut(s) 139, 337, 417
Hpy188III TCNNGA 3 cut(s) 11, 247, 318
Hpy8I GTNNAC 4 cut(s) 76, 100, 210, 355
Hpy99I CGWCG 3 cut(s) 147, 291, 362
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 3 cut(s) 143, 235, 305
HpyCH4IV ACGT 3 cut(s) 72, 215, 360
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 3 cut(s) 72, 215, 360
HspAI GCGC 2 cut(s) 227, 330
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 79, 141, 267, 303, 357, 412, 437
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 311, 341
MaeII ACGT 3 cut(s) 72, 215, 360
MaeIII GTNAC 1 cut(s) 401
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 7 cut(s) 53, 102, 144, 147, 150, 153, 251
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 299, 424
MluCI AATT 1 cut(s) 343
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 4 cut(s) 118, 164, 309, 423
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 99, 347
MspI CCGG 1 cut(s) 399
MvnI CGCG 4 cut(s) 54, 80, 248, 391
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 413
NruI TCGCGA 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 212, 375
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 134, 259
PkrI GCNGC 5 cut(s) 285, 326, 329, 390, 439
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 241
RruI TCGCGA 1 cut(s) 248
Rsr2I CGGWCCG 1 cut(s) 139
RsrII CGGWCCG 1 cut(s) 139
SaqAI TTAA 2 cut(s) 99, 347
SatI GCNGC 5 cut(s) 284, 325, 328, 389, 438
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 32
SduI GDGCHC 2 cut(s) 299, 424
SetI ASST 7 cut(s) 75, 97, 196, 218, 279, 363, 470
SfaNI GCATC 2 cut(s) 311, 341
SinI GGWCC 1 cut(s) 139
Sse9I AATT 1 cut(s) 343
SsiI CCGC 8 cut(s) 54, 80, 324, 327, 386, 389, 410, 437
TaaI ACNGT 3 cut(s) 143, 235, 305
TaiI ACGT 3 cut(s) 75, 218, 363
TaqI TCGA 2 cut(s) 179, 463
TasI AATT 1 cut(s) 343
TauI GCSGC 4 cut(s) 327, 330, 391, 440
TfiI GAWTC 2 cut(s) 134, 259
Tru1I TTAA 2 cut(s) 99, 347
Tru9I TTAA 2 cut(s) 99, 347
TscAI CASTG 1 cut(s) 308
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.